Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shank3a

Gene Name Gene ID Reads Annotation
shank3a ENSDARG00000063332 5 SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]










Genes with expression patterns similar to shank3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shank3a ENSDARG00000063332 5 6 - - 1.000 1.000 1.000 1.000 - 1.000 1.000 SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]
2. UIMC1 200 2 - - 1.000 - - - - 1.000 - ubiquitin interaction motif containing 1
3. PRKCA_1 ENSDARG00000099841 12 2 - - 1.000 - - 1.000 - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
4. CABZ01079009.1 CABZ01079009.1 1 2 - - 1.000 1.000 - - - - -
5. clec3ba ENSDARG00000076541 3 2 - - 1.000 - - - - 1.000 - C-type lectin domain family 3, member Ba [Source:ZFIN;Acc:ZDB-GENE-110411-71]
6. si:dkey-11e23.3 si:dkey-11e23.3 3 2 - - - - - 1.000 - 1.000 -
7. si:dkey-92j12.5 ENSDARG00000094677 5 2 - - 1.000 1.000 - - - - - si:dkey-92j12.5 [Source:ZFIN;Acc:ZDB-GENE-090313-354]
8. dnajc5b ENSDARG00000058147 6 2 - - 1.000 - 1.000 - - - - DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Source:ZFIN;Acc:ZDB-GENE-050413-1]
9. si:dkey-284p5.3 ENSDARG00000095638 4 2 - - 1.000 - - 1.000 - - - si:dkey-284p5.3 [Source:ZFIN;Acc:ZDB-GENE-060503-352]
10. psmb11 psmb11 5 2 - - - - - 1.000 - 1.000 -
11. ppid_1 ENSDARG00000038835 4 1.946 - - - 0.946 1.000 - - - - peptidylprolyl isomerase D [Source:ZFIN;Acc:ZDB-GENE-040625-34]
12. si:ch211-274p24.3 si:ch211-274p24.3 72 1.895 - - - 0.895 - 1.000 - - -
13. slc1a9 ENSDARG00000098269 12 1.795 - - - - 0.795 - - 1.000 - solute carrier family 1 (glutamate transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-101111-9]
14. rhol ENSDARG00000070666 0 1.792 - - - 0.792 1.000 - - - - rhodopsin, like [Source:ZFIN;Acc:ZDB-GENE-070424-6]
15. GPX2 ENSDARG00000089149 10 1.792 - - 1.000 0.792 - - - - - glutathione peroxidase 2 [Source:NCBI gene;Acc:100334384]
16. si:dkey-238m4.4 ENSDARG00000093248 3 1.792 - - - 0.792 - - - 1.000 - si:dkey-238m4.4 [Source:ZFIN;Acc:ZDB-GENE-100922-215]
17. NPY2R ENSDARG00000094763, ENSDARG00000112792 1 1.792 - - - 0.792 - 1.000 - - - neuropeptide Y receptor Y2 [Source:ZFIN;Acc:ZDB-GENE-040924-8]
18. xcr1a xcr1a 3 1.764 - - 0.764 - - 1.000 - - -
19. ncanb ENSDARG00000005783 22 1.761 - - - - 0.761 1.000 - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
20. tcf3a ENSDARG00000005915 12 1.756 - - 0.756 - 1.000 - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
21. CCDC74B CCDC74B 8 1.743 - - - - 1.000 - - - 0.743
22. BX088718.1 ENSDARG00000101847 3 1.729 - - - - 1.000 - - - 0.729
23. CABZ01063402.1 CABZ01063402.1 64 1.725 - - - - - 1.000 - 0.725 -
24. RAI1 ENSDARG00000076679 59 1.614 - - 0.868 - - 0.746 - - - retinoic acid induced 1 [Source:ZFIN;Acc:ZDB-GENE-101203-2]
25. BSN_1 BSN_1 21 1.577 - - 0.831 - - 0.746 - - -
26. ghrh ENSDARG00000069481, ENSDARG00000111551 9 1.556 - - 0.764 0.792 - - - - - growth hormone releasing hormone [Source:ZFIN;Acc:ZDB-GENE-070426-1]
27. si:rp71-7l19.6 si:rp71-7l19.6 12 1.556 - - 0.764 0.792 - - - - -
28. ZNF423 ENSDARG00000059707 11 1.553 - - - 0.792 0.761 - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
29. gpr88 24 1.545 - - 0.772 0.773 - - - - - G protein-coupled receptor 88
30. evx2 ENSDARG00000059255 317 1.505 - - 0.790 - - 0.715 - - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
31. TMEM121 TMEM121 4 1.444 - - - - - 0.739 - - 0.705
32. si:ch211-128b10.4 si:ch211-128b10.4 3 1 - - - - - 1.000 - - -
33. CABZ01080434.1 ENSDARG00000102438 4 1 - - - - 1.000 - - - -
34. TTC40 TTC40 1 1 - - - - 1.000 - - - -
35. si:dkeyp-35e5.5 ENSDARG00000104026 3 1 - - 1.000 - - - - - - si:dkeyp-35e5.5 [Source:ZFIN;Acc:ZDB-GENE-050420-335]
36. SNORD83 SNORD83 43 1 - - - - 1.000 - - - -
37. CABZ01117474.1 CABZ01117474.1 2 1 - - - - 1.000 - - - -
38. pcdh2g16 1 1 - - 1.000 - - - - - - protocadherin 2 gamma 16
39. brinp3b ENSDARG00000075352 14 1 - - 1.000 - - - - - - bone morphogenetic protein/retinoic acid inducible neural-specific 3b [Source:ZFIN;Acc:ZDB-GENE-121022-1]
40. BX005052.1 BX005052.1 16 1 - - - - - 1.000 - - -
41. NLRC5 ENSDARG00000024631 11 1 - - 1.000 - - - - - - NLR family, CARD domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-080429-2]
42. TDRD6 ENSDARG00000070052 1 1 - - - - - 1.000 - - - tudor domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-041001-210]
43. BX005356.2 BX005356.2 2 1 - - - - 1.000 - - - -
44. si:ch211-262n1.5 12 1 - - 1.000 - - - - - - si:ch211-262n1.5
45. si:ch211-250k18.8_1 2 1 - - - - - - - 1.000 - si:ch211-250k18.8
46. hhat ENSDARG00000074428 8 1 - - - - 1.000 - - - - hedgehog acyltransferase [Source:ZFIN;Acc:ZDB-GENE-051118-1]
47. tmem174 ENSDARG00000035388 2 1 - - - - 1.000 - - - - transmembrane protein 174 [Source:ZFIN;Acc:ZDB-GENE-080819-2]
48. si:ch211-51n3.1 si:ch211-51n3.1 26 1 - - - - - - - 1.000 -
49. si:dkey-247i3.5 ENSDARG00000096186 7 1 - - 1.000 - - - - - - si:dkey-247i3.5 [Source:ZFIN;Acc:ZDB-GENE-110914-32]
50. si:dkeyp-33e11.1 6 1 - - - - 1.000 - - - - si:dkeyp-33e11.1, transcript variant X3
51. si:ch211-168h21.3 10 1 - - - - - 1.000 - - - si:ch211-168h21.3
52. LRRC52 ENSDARG00000090698 1 1 - - 1.000 - - - - - - leucine rich repeat containing 52 [Source:HGNC Symbol;Acc:HGNC:32156]
53. SYNGAP1 SYNGAP1 4 1 - - 1.000 - - - - - -
54. gabrr1 ENSDARG00000043902 1 1 - - 1.000 - - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
55. OTUD7A ENSDARG00000045556 1 1 - - 1.000 - - - - - - OTU deubiquitinase 7A [Source:HGNC Symbol;Acc:HGNC:20718]
56. si:ch211-59g22.2 si:ch211-59g22.2 7 1 - - - - - 1.000 - - -
57. si:ch211-137i24.12 ENSDARG00000094537 35 1 - - - - - - - 1.000 - si:ch211-137i24.12 [Source:ZFIN;Acc:ZDB-GENE-060526-36]
58. BX323796.1 BX323796.1 2 1 - - - - 1.000 - - - -
59. si:ch211-207e19.15 ENSDARG00000113022 5 1 - - - - 1.000 - - - - si:ch211-207e19.15 [Source:ZFIN;Acc:ZDB-GENE-110914-27]
60. si:dkey-11d20.4 si:dkey-11d20.4 6 1 - - 1.000 - - - - - -
61. si:dkey-20j3.4 si:dkey-20j3.4 4 1 - - - - 1.000 - - - -
62. PTCHD2 PTCHD2 2 1 - - - - 1.000 - - - -
63. CABZ01085177.1 ENSDARG00000104644 6 1 - - 1.000 - - - - - - transcription factor IIIB 50 kDa subunit-like [Source:NCBI gene;Acc:100536580]
64. CR450785.2 ENSDARG00000111875 1 1 - - 1.000 - - - - - -
65. wu:fe37d09 wu:fe37d09 0 1 - - 1.000 - - - - - -
66. spata7 ENSDARG00000075898 16 1 - - - - 1.000 - - - - spermatogenesis associated 7 [Source:ZFIN;Acc:ZDB-GENE-050419-61]
67. CABZ01073071.2 CABZ01073071.2 0 1 - - - - 1.000 - - - -
68. josd1 ENSDARG00000071548, ENSDARG00000113255, ENSDARG00000115146 4 1 - - 1.000 - - - - - - Josephin domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-260]
69. rbp1b rbp1b 36 1 - - - - - 1.000 - - -
70. OLFM4 OLFM4 6 1 - - 1.000 - - - - - -
71. si:dkey-15h8.3 si:dkey-15h8.3 0 1 - - - - - - - 1.000 -
72. BX927362.1 ENSDARG00000097469 13 1 - - - - - 1.000 - - -
73. npy4r ENSDARG00000043341, ENSDARG00000113787 1 1 - - - - - 1.000 - - - neuropeptide Y receptor Y4 [Source:ZFIN;Acc:ZDB-GENE-980526-393]
74. BX469930.1 ENSDARG00000092358 3 1 - - - 1.000 - - - - -
75. DTWD2 ENSDARG00000101873 1 1 - - - - 1.000 - - - - DTW domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120215-183]
76. BRINP3 BRINP3 11 1 - - - - - 1.000 - - -
77. rock2b_1 ENSDARG00000004877, ENSDARG00000096433 0 1 - - - - - - - 1.000 - rho-associated, coiled-coil containing protein kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060125-2]
78. VOPP1 ENSDARG00000076373 12 1 - - 1.000 - - - - - - VOPP1, WBP1/VOPP1 family member [Source:ZFIN;Acc:ZDB-GENE-091204-64]
79. U3_9 U3_9 4 1 - - - - 1.000 - - - -
80. si:ch211-57f7.7 ENSDARG00000093131 8 1 - - - - - - - 1.000 - si:ch211-57f7.7 [Source:ZFIN;Acc:ZDB-GENE-090313-119]
81. BX927318.2 BX927318.2 5 1 - - 1.000 - - - - - -
82. arl8 ENSDARG00000094709 6 1 - - - - 1.000 - - - - ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
83. CU694320.1 CU694320.1 6 1 - - - - 1.000 - - - -
84. si:dkeyp-82a1.2 ENSDARG00000094192 2 1 - - - - - 1.000 - - - si:dkeyp-82a1.2 [Source:ZFIN;Acc:ZDB-GENE-081104-475]
85. si:dkey-119g10.4 si:dkey-119g10.4 7 1 - - - - 1.000 - - - -
86. gzma ENSDARG00000090380, ENSDARG00000112472 0 1 - - - - - - - 1.000 - granzyme A [Source:ZFIN;Acc:ZDB-GENE-091204-156]
87. 5S_rRNA_30 5S_rRNA_30 0 1 - - - - 1.000 - - - -
88. BX897720.4 BX897720.4 0 1 - - - - 1.000 - - - -
89. RIC3_1 ENSDARG00000105549 2 1 - - - - - 1.000 - - - RIC3 acetylcholine receptor chaperone [Source:HGNC Symbol;Acc:HGNC:30338]
90. ZNF337_16 ZNF337_16 22 1 - - - - - 1.000 - - -
91. cd226 ENSDARG00000045391 2 1 - - - - 1.000 - - - - CD226 molecule [Source:ZFIN;Acc:ZDB-GENE-070112-1322]
92. CU655969.1 CU655969.1 0 1 - - - - 1.000 - - - -
93. si:ch211-86k6.3 si:ch211-86k6.3 1 1 - - - 1.000 - - - - -
94. si:dkey-65l23.1 2 1 - - - - 1.000 - - - - si:dkey-65l23.1
95. gabbr1a ENSDARG00000018967 2 1 - - - - - 1.000 - - - gamma-aminobutyric acid (GABA) B receptor, 1a [Source:ZFIN;Acc:ZDB-GENE-030904-5]
96. cecr1b 2 1 - - - - - 1.000 - - - cat eye syndrome chromosome region, candidate 1b
97. Y_RNA Y_RNA 0 1 - - - - - - - 1.000 -
98. CT737190.3 CT737190.3 0 1 - - - - 1.000 - - - -
99. LAMA3 ENSDARG00000071462 5 1 - - - - - 1.000 - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
100. porcnl ENSDARG00000052455 29 1 - - - - - 1.000 - - - porcupine O-acyltransferase like [Source:ZFIN;Acc:ZDB-GENE-030131-5931]

There are 775 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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