Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shank3a

Gene Name Gene ID Reads Annotation
shank3a ENSDARG00000063332 5 SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]










Genes with expression patterns similar to shank3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shank3a ENSDARG00000063332 5 6 - - 1.000 1.000 1.000 1.000 - 1.000 1.000 SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]
2. si:dkey-284p5.3 ENSDARG00000095638 4 2 - - 1.000 - - 1.000 - - - si:dkey-284p5.3 [Source:ZFIN;Acc:ZDB-GENE-060503-352]
3. psmb11 psmb11 5 2 - - - - - 1.000 - 1.000 -
4. clec3ba ENSDARG00000076541 3 2 - - 1.000 - - - - 1.000 - C-type lectin domain family 3, member Ba [Source:ZFIN;Acc:ZDB-GENE-110411-71]
5. CABZ01079009.1 CABZ01079009.1 1 2 - - 1.000 1.000 - - - - -
6. PRKCA_1 ENSDARG00000099841 12 2 - - 1.000 - - 1.000 - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
7. dnajc5b ENSDARG00000058147 6 2 - - 1.000 - 1.000 - - - - DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Source:ZFIN;Acc:ZDB-GENE-050413-1]
8. si:dkey-11e23.3 si:dkey-11e23.3 3 2 - - - - - 1.000 - 1.000 -
9. UIMC1 200 2 - - 1.000 - - - - 1.000 - ubiquitin interaction motif containing 1
10. si:dkey-92j12.5 ENSDARG00000094677 5 2 - - 1.000 1.000 - - - - - si:dkey-92j12.5 [Source:ZFIN;Acc:ZDB-GENE-090313-354]
11. ppid_1 ENSDARG00000038835 4 1.946 - - - 0.946 1.000 - - - - peptidylprolyl isomerase D [Source:ZFIN;Acc:ZDB-GENE-040625-34]
12. si:ch211-274p24.3 si:ch211-274p24.3 72 1.895 - - - 0.895 - 1.000 - - -
13. slc1a9 ENSDARG00000098269 12 1.795 - - - - 0.795 - - 1.000 - solute carrier family 1 (glutamate transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-101111-9]
14. NPY2R ENSDARG00000094763, ENSDARG00000112792 1 1.792 - - - 0.792 - 1.000 - - - neuropeptide Y receptor Y2 [Source:ZFIN;Acc:ZDB-GENE-040924-8]
15. GPX2 ENSDARG00000089149 10 1.792 - - 1.000 0.792 - - - - - glutathione peroxidase 2 [Source:NCBI gene;Acc:100334384]
16. rhol ENSDARG00000070666 0 1.792 - - - 0.792 1.000 - - - - rhodopsin, like [Source:ZFIN;Acc:ZDB-GENE-070424-6]
17. si:dkey-238m4.4 ENSDARG00000093248 3 1.792 - - - 0.792 - - - 1.000 - si:dkey-238m4.4 [Source:ZFIN;Acc:ZDB-GENE-100922-215]
18. xcr1a xcr1a 3 1.764 - - 0.764 - - 1.000 - - -
19. ncanb ENSDARG00000005783 22 1.761 - - - - 0.761 1.000 - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
20. tcf3a ENSDARG00000005915 12 1.756 - - 0.756 - 1.000 - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
21. CCDC74B CCDC74B 8 1.743 - - - - 1.000 - - - 0.743
22. BX088718.1 ENSDARG00000101847 3 1.729 - - - - 1.000 - - - 0.729
23. CABZ01063402.1 CABZ01063402.1 64 1.725 - - - - - 1.000 - 0.725 -
24. RAI1 ENSDARG00000076679 59 1.614 - - 0.868 - - 0.746 - - - retinoic acid induced 1 [Source:ZFIN;Acc:ZDB-GENE-101203-2]
25. BSN_1 BSN_1 21 1.577 - - 0.831 - - 0.746 - - -
26. ghrh ENSDARG00000069481, ENSDARG00000111551 9 1.556 - - 0.764 0.792 - - - - - growth hormone releasing hormone [Source:ZFIN;Acc:ZDB-GENE-070426-1]
27. si:rp71-7l19.6 si:rp71-7l19.6 12 1.556 - - 0.764 0.792 - - - - -
28. ZNF423 ENSDARG00000059707 11 1.553 - - - 0.792 0.761 - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
29. gpr88 24 1.545 - - 0.772 0.773 - - - - - G protein-coupled receptor 88
30. evx2 ENSDARG00000059255 317 1.505 - - 0.790 - - 0.715 - - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
31. TMEM121 TMEM121 4 1.444 - - - - - 0.739 - - 0.705
32. BX248324.1 ENSDARG00000096489 3 1 - - - - - 1.000 - - -
33. PEG3_18 PEG3_18 0 1 - - - - 1.000 - - - -
34. FBLN7 ENSDARG00000089519 4 1 - - - - - 1.000 - - - fibulin 7 [Source:ZFIN;Acc:ZDB-GENE-170130-2]
35. BX004816.2 ENSDARG00000087012 3 1 - - - - - - - 1.000 -
36. KCNA2_1 KCNA2_1 15 1 - - - - - 1.000 - - -
37. BX511266.1 BX511266.1 21 1 - - - - - 1.000 - - -
38. BX088603.2 ENSDARG00000099595 2 1 - - 1.000 - - - - - -
39. rhpn1 ENSDARG00000052454 3 1 - - - - 1.000 - - - - rhophilin, Rho GTPase binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-081031-79]
40. si:ch73-27j14.2 si:ch73-27j14.2 32 1 - - - - - - - 1.000 -
41. zgc:175107 ENSDARG00000075417 39 1 - - - - 1.000 - - - - zgc:175107 [Source:ZFIN;Acc:ZDB-GENE-080220-38]
42. josd1 ENSDARG00000071548, ENSDARG00000113255, ENSDARG00000115146 4 1 - - 1.000 - - - - - - Josephin domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-260]
43. ftr79 ENSDARG00000093972 1 1 - - 1.000 - - - - - - finTRIM family, member 79 [Source:ZFIN;Acc:ZDB-GENE-060126-4]
44. EDN3 14 1 - - - - 1.000 - - - - endothelin 3
45. ABCD2 ENSDARG00000059409 1 1 - - 1.000 - - - - - - ATP-binding cassette, sub-family D (ALD), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-28]
46. tnk2b ENSDARG00000104409 1 1 - - - - - 1.000 - - - tyrosine kinase, non-receptor, 2b [Source:ZFIN;Acc:ZDB-GENE-110411-165]
47. zgc:173708 zgc:173708 2 1 - - - - 1.000 - - - -
48. ARHGEF10L ARHGEF10L 18 1 - - - - - 1.000 - - -
49. si:ch211-268b13.6 si:ch211-268b13.6 0 1 - - - - 1.000 - - - -
50. BX004879.1 BX004879.1 0 1 - - 1.000 - - - - - -
51. si:dkey-179o14.4 si:dkey-179o14.4 2 1 - - - - - - - 1.000 -
52. CABZ01079979.1 CABZ01079979.1 1 1 - - - - - - - 1.000 -
53. AL929092.3 AL929092.3 0 1 - - 1.000 - - - - - -
54. ZNF70_5 ZNF70_5 25 1 - - - - 1.000 - - - -
55. hmgb2a ENSDARG00000029722 28 1 - - - - - 1.000 - - - high mobility group box 2a [Source:ZFIN;Acc:ZDB-GENE-051120-126]
56. si:dkeyp-67e1.8 si:dkeyp-67e1.8 6 1 - - - - - 1.000 - - -
57. barhl1b ENSDARG00000019013, ENSDARG00000113145 101 1 - - - - - 1.000 - - - BarH-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-060118-2]
58. tec ENSDARG00000098477 2 1 - - 1.000 - - - - - - tec protein tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-030131-7499]
59. lgsn ENSDARG00000007715 8 1 - - - - 1.000 - - - - lengsin, lens protein with glutamine synthetase domain [Source:ZFIN;Acc:ZDB-GENE-060312-26]
60. si:dkey-30c15.9 si:dkey-30c15.9 4 1 - - - - - - - 1.000 -
61. si:dkey-233h12.4 si:dkey-233h12.4 2 1 - - - - - - - 1.000 -
62. CABZ01073085.1 CABZ01073085.1 1 1 - - - - 1.000 - - - -
63. wfs1b ENSDARG00000074617 69 1 - - - - - 1.000 - - - Wolfram syndrome 1b (wolframin) [Source:ZFIN;Acc:ZDB-GENE-050809-19]
64. zymnd12 17 1 - - - - - - - 1.000 - zinc finger, MYND-type containing 12, transcript variant X1
65. PLCB1 2 1 - - - - - 1.000 - - - phospholipase C beta 1
66. BX469910.2 ENSDARG00000096127 6 1 - - - - 1.000 - - - -
67. mfi2 224 1 - - 1.000 - - - - - - antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5, transcript variant X2
68. GPR114 GPR114 1 1 - - - - - 1.000 - - -
69. grin2ca ENSDARG00000078149 13 1 - - - - - 1.000 - - - glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca [Source:ZFIN;Acc:ZDB-GENE-070822-3]
70. BX927318.2 BX927318.2 5 1 - - 1.000 - - - - - -
71. slc7a14b ENSDARG00000079231 6 1 - - 1.000 - - - - - - solute carrier family 7, member 14b [Source:ZFIN;Acc:ZDB-GENE-091113-47]
72. si:dkeyp-33e11.1 6 1 - - - - 1.000 - - - - si:dkeyp-33e11.1, transcript variant X3
73. pcdh1a4 0 1 - - 1.000 - - - - - - protocadherin 1 alpha 4
74. crhr1 ENSDARG00000003989 5 1 - - 1.000 - - - - - - corticotropin releasing hormone receptor 1 [Source:ZFIN;Acc:ZDB-GENE-081231-1]
75. PTCHD2 PTCHD2 2 1 - - - - 1.000 - - - -
76. cep89 ENSDARG00000005092 4 1 - - - - - - - 1.000 - centrosomal protein 89 [Source:ZFIN;Acc:ZDB-GENE-040426-1210]
77. fgf23 ENSDARG00000045854 2 1 - - - - 1.000 - - - - fibroblast growth factor 23 [Source:ZFIN;Acc:ZDB-GENE-050201-4]
78. taar20b1 ENSDARG00000110415, ENSDARG00000110775, ENSDARG00000112935 1 1 - - - - 1.000 - - - - trace amine associated receptor 20b1 [Source:ZFIN;Acc:ZDB-GENE-060413-5]
79. SCARNA15 SCARNA15 1 1 - - 1.000 - - - - - -
80. LRRC38 LRRC38 5 1 - - - 1.000 - - - - -
81. siglec15l ENSDARG00000076132 2 1 - - - - - - - 1.000 - sialic acid binding Ig-like lectin 15, like [Source:ZFIN;Acc:ZDB-GENE-100922-281]
82. si:dkey-11d20.4 si:dkey-11d20.4 6 1 - - 1.000 - - - - - -
83. si:dkey-261j4.3 ENSDARG00000035151 156 1 - - - - - - - 1.000 - si:dkey-261j4.3 [Source:ZFIN;Acc:ZDB-GENE-060531-124]
84. rock2b_1 ENSDARG00000004877, ENSDARG00000096433 0 1 - - - - - - - 1.000 - rho-associated, coiled-coil containing protein kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060125-2]
85. LAMA3 ENSDARG00000071462 5 1 - - - - - 1.000 - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
86. btf3l4 ENSDARG00000089681 2 1 - - - - 1.000 - - - - basic transcription factor 3-like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1650]
87. MTSS1L MTSS1L 7 1 - - - - - - - 1.000 -
88. spata7 ENSDARG00000075898 16 1 - - - - 1.000 - - - - spermatogenesis associated 7 [Source:ZFIN;Acc:ZDB-GENE-050419-61]
89. si:ch211-262a22.3 si:ch211-262a22.3 0 1 - - - - 1.000 - - - -
90. C11H1orf116 C11H1orf116 9 1 - - 1.000 - - - - - -
91. 5S_rRNA_13 5S_rRNA_13 0 1 - - 1.000 - - - - - -
92. CDHR5 CDHR5 2 1 - - - - 1.000 - - - -
93. nmu ENSDARG00000043299 67 1 - - - - - 1.000 - - - neuromedin U [Source:ZFIN;Acc:ZDB-GENE-041001-111]
94. si:ch211-51n3.1 si:ch211-51n3.1 26 1 - - - - - - - 1.000 -
95. CABZ01079541.1 CABZ01079541.1 0 1 - - 1.000 - - - - - -
96. slc41a1 ENSDARG00000070214, ENSDARG00000114707 20 1 - - - - - 1.000 - - - solute carrier family 41 (magnesium transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4700]
97. si:dkey-258f14.3 ENSDARG00000075974 9 1 - - - - 1.000 - - - - si:dkey-258f14.3 [Source:ZFIN;Acc:ZDB-GENE-050809-43]
98. si:ch211-217k17.10 ENSDARG00000079345 4 1 - - - - 1.000 - - - - si:ch211-217k17.10 [Source:ZFIN;Acc:ZDB-GENE-030131-8827]
99. si:dkey-54g2.5 si:dkey-54g2.5 2 1 - - - - - - - 1.000 -
100. si:dkey-30h14.3 si:dkey-30h14.3 1 1 - - 1.000 - - - - - -

There are 775 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA