Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shank2

Gene Name Gene ID Reads Annotation
shank2 ENSDARG00000062325 66 SH3 and multiple ankyrin repeat domains 2 [Source:ZFIN;Acc:ZDB-GENE-061207-58]










Genes with expression patterns similar to shank2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shank2 ENSDARG00000062325 66 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 SH3 and multiple ankyrin repeat domains 2 [Source:ZFIN;Acc:ZDB-GENE-061207-58]
2. si:dkey-228i19.32 si:dkey-228i19.32 9 2 1.000 - - - - 1.000 - - -
3. NPBWR2 NPBWR2 132 1.931 1.000 - - - - 0.931 - - -
4. zic6 ENSDARG00000071496 402 1.91 0.958 - - - - 0.952 - - - zic family member 6 [Source:ZFIN;Acc:ZDB-GENE-061207-1]
5. CRIP2 ENSDARG00000070670 323 1.903 0.955 - - - - 0.948 - - - cysteine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2889]
6. mlphb ENSDARG00000062481 14 1.868 1.000 - - - - 0.868 - - - melanophilin b [Source:ZFIN;Acc:ZDB-GENE-070803-2]
7. plekho1a ENSDARG00000061191 98 1.868 - - - - 0.925 0.943 - - - pleckstrin homology domain containing, family O member 1a [Source:ZFIN;Acc:ZDB-GENE-060503-433]
8. LRRC4C ENSDARG00000113411 36 1.859 1.000 - - - - 0.859 - - - leucine rich repeat containing 4C [Source:ZFIN;Acc:ZDB-GENE-050522-533]
9. rmi1 ENSDARG00000041376 674 1.836 - - - - 0.961 0.875 - - - RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-829]
10. zgc:113210 ENSDARG00000002872 99 1.806 1.000 - - - - 0.806 - - - zgc:113210 [Source:ZFIN;Acc:ZDB-GENE-050320-83]
11. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 1.798 0.939 - - - - 0.859 - - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
12. nacad ENSDARG00000012347 1268 1.784 0.827 - - - - 0.957 - - - NAC alpha domain containing [Source:ZFIN;Acc:ZDB-GENE-091020-7]
13. grik5 ENSDARG00000101449, ENSDARG00000111384 75 1.764 1.000 - - - - 0.764 - - - glutamate receptor, ionotropic, kainate 5 [Source:ZFIN;Acc:ZDB-GENE-070821-6]
14. diras1a ENSDARG00000028066 126 1.764 0.853 - - - - 0.911 - - - DIRAS family, GTP-binding RAS-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5788]
15. lgi2a ENSDARG00000111069 965 1.762 0.830 - - - - 0.932 - - - leucine-rich repeat LGI family, member 2a [Source:ZFIN;Acc:ZDB-GENE-060217-2]
16. nlgn3b ENSDARG00000062376 171 1.762 - - - - 0.973 0.789 - - - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
17. SKOR2 SKOR2 1041 1.747 0.850 - - - - 0.897 - - -
18. FAXC FAXC 102 1.742 1.000 - - - - 0.742 - - -
19. ATP6AP1L ATP6AP1L 164 1.739 0.848 - - - - 0.891 - - -
20. TUBB8P7_2 TUBB8P7_2 565 1.73 - - - - 0.805 0.925 - - -
21. zgc:194665 ENSDARG00000004577 136 1.727 0.783 - - - - 0.944 - - - zgc:194665 [Source:ZFIN;Acc:ZDB-GENE-080722-38]
22. rgs12a ENSDARG00000009610 284 1.724 - - - - 0.841 0.883 - - - regulator of G protein signaling 12a [Source:ZFIN;Acc:ZDB-GENE-030131-2614]
23. gsx1 ENSDARG00000035735 1243 1.72 0.780 - - - - 0.940 - - - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
24. chrm4a ENSDARG00000069254 32 1.714 1.000 - - - - 0.714 - - - cholinergic receptor, muscarinic 4a [Source:ZFIN;Acc:ZDB-GENE-090410-6]
25. si:dkey-193c22.1 ENSDARG00000093687 104 1.713 0.958 - - - - 0.755 - - - si:dkey-193c22.1 [Source:ZFIN;Acc:ZDB-GENE-030131-7957]
26. syt4 ENSDARG00000036505 421 1.704 0.766 - - - - 0.938 - - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
27. evx2 ENSDARG00000059255 317 1.693 0.802 - - - - 0.891 - - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
28. SHANK1 ENSDARG00000060539 102 1.69 0.736 - - - - 0.954 - - - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
29. calb1 ENSDARG00000031598 252 1.683 0.852 - - - - 0.831 - - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
30. tbx16 ENSDARG00000007329 255 1.677 0.724 - - - - 0.953 - - - T-box 16 [Source:ZFIN;Acc:ZDB-GENE-990615-5]
31. cacng3b ENSDARG00000076401 91 1.677 0.904 - - - - 0.773 - - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
32. nrxn2b ENSDARG00000063150 343 1.675 0.740 - - - - 0.935 - - - neurexin 2b [Source:ZFIN;Acc:ZDB-GENE-070206-7]
33. pou4f2 ENSDARG00000069737 451 1.662 0.951 - - - - 0.711 - - - POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
34. gabrg2 ENSDARG00000053665 434 1.635 0.840 - - - - 0.795 - - - gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65]
35. CABZ01029822.1 ENSDARG00000086931 1654 1.631 0.883 - - - - 0.748 - - - uncharacterized LOC100004582 [Source:NCBI gene;Acc:100004582]
36. TUBB8P7 TUBB8P7 1353 1.627 0.770 - - - - 0.857 - - -
37. cdk5r1b ENSDARG00000045087 2075 1.625 0.791 - - - - 0.834 - - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
38. NEFH NEFH 101 1.624 0.792 - - - - 0.832 - - -
39. MAP4 MAP4 315 1.621 - - - - 0.854 0.767 - - -
40. slc1a2b ENSDARG00000102453 3136 1.62 0.780 - - - - 0.840 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
41. BX957322.2 ENSDARG00000095302 68 1.612 0.802 - - - - 0.810 - - -
42. rusc1 ENSDARG00000078125 617 1.612 0.732 - - - - 0.880 - - - RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
43. elavl4 ENSDARG00000045639 998 1.612 0.708 - - - - 0.904 - - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
44. PRRT2 ENSDARG00000103588 913 1.604 0.763 - - - - 0.841 - - - proline-rich transmembrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-121210-3]
45. inab ENSDARG00000053248 3239 1.601 0.768 - - - - 0.833 - - - internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
46. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 1.587 0.702 - - - - 0.885 - - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
47. gpr173 ENSDARG00000042922 238 1.578 0.714 - - - - 0.864 - - - G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
48. tlx2 ENSDARG00000011273 870 1.562 0.725 - - - - 0.837 - - - T cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020208-1]
49. dnm1b ENSDARG00000009281 219 1.56 0.780 - - - - 0.780 - - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
50. tmcc2 ENSDARG00000046007 148 1.559 0.789 - - - - 0.770 - - - transmembrane and coiled-coil domain family 2 [Source:ZFIN;Acc:ZDB-GENE-091202-2]
51. kif3a ENSDARG00000087538, ENSDARG00000109880, ENSDARG00000117005 1216 1.559 - - - - 0.793 0.766 - - - kinesin family member 3A [Source:ZFIN;Acc:ZDB-GENE-050417-71]
52. scn8aa ENSDARG00000005775 792 1.557 0.724 - - - - 0.833 - - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
53. penka ENSDARG00000004869 161 1.548 0.772 - - - - 0.776 - - - proenkephalin a [Source:ZFIN;Acc:ZDB-GENE-030729-31]
54. CR407704.1 CR407704.1 188 1.548 0.719 - - - - 0.829 - - -
55. robo1 ENSDARG00000026784 125 1.535 - - - - 0.809 0.726 - - - roundabout, axon guidance receptor, homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000209-3]
56. CABZ01062083.1 CABZ01062083.1 40 1.524 - - 0.772 0.752 - - - - -
57. kcnk9 ENSDARG00000104563 92 1.523 0.793 - - - - 0.730 - - - potassium channel, subfamily K, member 9 [Source:ZFIN;Acc:ZDB-GENE-070705-260]
58. si:ch211-152f6.6 si:ch211-152f6.6 278 1.516 - - - - 0.729 0.787 - - -
59. syngr3b ENSDARG00000025034 290 1.514 0.721 - - - - 0.793 - - - synaptogyrin 3b [Source:ZFIN;Acc:ZDB-GENE-070822-6]
60. cadm3 ENSDARG00000057013 1545 1.509 0.749 - - - - 0.760 - - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
61. rac3a ENSDARG00000090062 394 1.471 0.728 - - - - 0.743 - - - Rac family small GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-040718-256]
62. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 1.465 0.754 - - - - 0.711 - - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
63. adcyap1b ENSDARG00000027740 1539 1.46 0.707 - - - - 0.753 - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
64. rapgef5b ENSDARG00000074307 112 1.455 - - 0.700 - - 0.755 - - - Rap guanine nucleotide exchange factor (GEF) 5b [Source:ZFIN;Acc:ZDB-GENE-061215-2]
65. plcxd3 ENSDARG00000054794 112 1.448 - - - - 0.705 0.743 - - - phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-10]
66. MAP1A MAP1A 847 1.446 0.739 - - - - 0.707 - - -
67. plxna4 ENSDARG00000019328 782 1.422 0.706 - - - - 0.716 - - - plexin A4 [Source:ZFIN;Acc:ZDB-GENE-030131-4663]
68. CABZ01073736.1 ENSDARG00000099438 81 1 1.000 - - - - - - - -
69. LPHN1_1 LPHN1_1 7 1 1.000 - - - - - - - -
70. BX530018.1 ENSDARG00000037576 2 1 1.000 - - - - - - - - D(1) dopamine receptor-like [Source:NCBI gene;Acc:567498]
71. si:ch211-113a14.26_1 5 1 1.000 - - - - - - - - si:ch211-113a14.26
72. FUT9 FUT9 91 1 1.000 - - - - - - - -
73. BX914198.1 BX914198.1 5 1 1.000 - - - - - - - -
74. si:ch211-14g4.4 si:ch211-14g4.4 6 1 1.000 - - - - - - - -
75. sycp3 ENSDARG00000013438 25 1 1.000 - - - - - - - - synaptonemal complex protein 3 [Source:ZFIN;Acc:ZDB-GENE-040910-2]
76. DLK1 60 1 1.000 - - - - - - - - delta like non-canonical Notch ligand 1
77. CLDN20 26 1 1.000 - - - - - - - - claudin 20, transcript variant X2
78. si:dkey-79c1.1 ENSDARG00000093179 11 1 1.000 - - - - - - - - si:dkey-79c1.1 [Source:ZFIN;Acc:ZDB-GENE-060531-153]
79. si:dkey-150k17.3 33 1 1.000 - - - - - - - - si:dkey-150k17.3
80. si:dkey-49n23.3 ENSDARG00000095325 4 1 1.000 - - - - - - - - si:dkey-49n23.3 [Source:ZFIN;Acc:ZDB-GENE-050208-799]
81. CABZ01032469.1 CABZ01032469.1 34 1 1.000 - - - - - - - -
82. si:dkey-179k24.6 si:dkey-179k24.6 5 1 1.000 - - - - - - - -
83. iqsec3b ENSDARG00000093091 10 1 1.000 - - - - - - - - IQ motif and Sec7 domain 3b [Source:ZFIN;Acc:ZDB-GENE-050420-210]
84. ARHGEF40 ENSDARG00000078979 25 1 1.000 - - - - - - - - Rho guanine nucleotide exchange factor (GEF) 40 [Source:ZFIN;Acc:ZDB-GENE-110623-2]
85. AP5Z1 ENSDARG00000078111 91 1 1.000 - - - - - - - - adaptor related protein complex 5 subunit zeta 1 [Source:ZFIN;Acc:ZDB-GENE-120508-2]
86. si:ch211-216b21.2 ENSDARG00000060253 54 1 1.000 - - - - - - - - si:ch211-216b21.2 [Source:ZFIN;Acc:ZDB-GENE-130603-96]
87. rnf217 ENSDARG00000060944 10 1 1.000 - - - - - - - - ring finger protein 217 [Source:ZFIN;Acc:ZDB-GENE-060503-400]
88. 5S_rRNA_7 5S_rRNA_7 55 1 - - - - - 1.000 - - -
89. SNORA19 SNORA19 24 1 1.000 - - - - - - - -
90. trpm2 ENSDARG00000095696, ENSDARG00000101641 1 1 1.000 - - - - - - - - transient receptor potential cation channel, subfamily M, member 2 [Source:ZFIN;Acc:ZDB-GENE-061214-4]
91. CSMD1 CSMD1 15 1 1.000 - - - - - - - -
92. flh flh 47 1 1.000 - - - - - - - -
93. jakmip2 ENSDARG00000053547 32 1 1.000 - - - - - - - - janus kinase and microtubule interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-091204-293]
94. trim9 ENSDARG00000039123 53 1 1.000 - - - - - - - - tripartite motif containing 9 [Source:ZFIN;Acc:ZDB-GENE-030131-8043]
95. trpc1 ENSDARG00000061203 62 1 1.000 - - - - - - - - transient receptor potential cation channel, subfamily C, member 1 [Source:ZFIN;Acc:ZDB-GENE-070830-1]
96. npffr2.1 npffr2.1 60 1 1.000 - - - - - - - -
97. si:dkey-203o14.2 si:dkey-203o14.2 5 1 1.000 - - - - - - - -
98. si:dkey-199m13.8 si:dkey-199m13.8 61 1 1.000 - - - - - - - -
99. paqr5a ENSDARG00000041145, ENSDARG00000115247 38 1 1.000 - - - - - - - - progestin and adipoQ receptor family member Va [Source:ZFIN;Acc:ZDB-GENE-040426-867]
100. zdhhc12b ENSDARG00000052787 43 1 1.000 - - - - - - - - zinc finger, DHHC-type containing 12b [Source:ZFIN;Acc:ZDB-GENE-070705-356]

There are 1154 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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