Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sh3rf1

Gene Name Gene ID Reads Annotation
sh3rf1 ENSDARG00000070470 1463 SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]










Genes with expression patterns similar to sh3rf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sh3rf1 ENSDARG00000070470 1463 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
2. qars ENSDARG00000010316 2715 2.681 - 0.793 0.956 - - - - - 0.932 glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
3. traf2b ENSDARG00000101036 429 2.604 - 0.719 - - - 0.951 - - 0.934 Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
4. pip5k1ab ENSDARG00000024642 1988 2.587 - - 0.970 - - 0.916 0.701 - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
5. kbp kbp 701 2.567 0.782 - - - - 0.838 - - 0.947
6. gtf2a1 ENSDARG00000011000 2026 2.39 - - 0.910 - - - 0.729 - 0.751 general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
7. dnajc5ga ENSDARG00000041896 1478 2.372 - 0.828 - - - 0.839 0.705 - - DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a [Source:ZFIN;Acc:ZDB-GENE-030131-1583]
8. bida ENSDARG00000069290, ENSDARG00000112031 825 1.922 - - 0.973 - - - - - 0.949 BH3 interacting domain death agonist [Source:ZFIN;Acc:ZDB-GENE-050419-35]
9. rqcd1 2301 1.91 - - 0.964 - - - - - 0.946 RCD1 required for cell differentiation1 homolog (S. pombe)
10. ctdsp1 ENSDARG00000040674 2828 1.897 - - 0.974 - - - - - 0.923 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-523]
11. polr2j ENSDARG00000035146 1493 1.89 - - 0.964 - - - - - 0.926 polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
12. ZNF576 ZNF576 1447 1.887 - - 0.979 - - 0.908 - - -
13. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.864 - - 0.974 - - - - - 0.890 TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
14. dnajb9a ENSDARG00000052072 578 1.86 - - - - - 0.917 - - 0.943 DnaJ (Hsp40) homolog, subfamily B, member 9a [Source:ZFIN;Acc:ZDB-GENE-050626-115]
15. sgut1 3470 1.86 - - 0.939 - - - - - 0.921 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone, transcript variant X1
16. KIAA0355 3250 1.856 - - 0.961 - - - - - 0.895 KIAA0355 ortholog, transcript variant X1
17. trim3b ENSDARG00000005397 680 1.852 - - 0.984 - - - 0.868 - - tripartite motif containing 3b [Source:ZFIN;Acc:ZDB-GENE-070112-1132]
18. C7H20orf27 C7H20orf27 1864 1.847 - - 0.950 - - - - - 0.897
19. tmed4 ENSDARG00000024954 3476 1.838 - - 0.965 - - 0.873 - - - transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
20. gcnt4a ENSDARG00000035198, ENSDARG00000110336 661 1.837 - - - - - 0.882 - - 0.955 glucosaminyl (N-acetyl) transferase 4, core 2, a [Source:ZFIN;Acc:ZDB-GENE-030131-3231]
21. grp ENSDARG00000043074 747 1.836 - - - - - 0.891 - - 0.945 gastrin-releasing peptide [Source:ZFIN;Acc:ZDB-GENE-060526-117]
22. col4a3 ENSDARG00000003395 499 1.835 - - - - - 0.899 - - 0.936 collagen, type IV, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070802-4]
23. nipal3 ENSDARG00000021147, ENSDARG00000109606 1058 1.826 - - - - - 0.874 - - 0.952 NIPA like domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040718-379]
24. lxn ENSDARG00000043102 415 1.826 - - - - - 0.872 - - 0.954 latexin [Source:ZFIN;Acc:ZDB-GENE-041212-18]
25. setd8b 2528 1.818 - - 0.942 - - 0.876 - - - SET domain containing (lysine methyltransferase) 8b
26. faf1 ENSDARG00000022418 2922 1.813 - - 0.975 - - 0.838 - - - Fas (TNFRSF6) associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2863]
27. cldn7b ENSDARG00000014047, ENSDARG00000114912 2960 1.795 - - - - - 0.900 - - 0.895 claudin 7b [Source:ZFIN;Acc:ZDB-GENE-001103-5]
28. myo1b ENSDARG00000024694 1761 1.793 - - 0.989 - - - 0.804 - - myosin IB [Source:ZFIN;Acc:ZDB-GENE-030131-695]
29. frmd6 ENSDARG00000002332 2698 1.788 - - - - - 0.865 0.923 - - FERM domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-354]
30. akr1a1b ENSDARG00000052030, ENSDARG00000112549 2505 1.786 - - - - - 0.949 0.837 - - aldo-keto reductase family 1, member A1b (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-050417-118]
31. ppapdc1b ppapdc1b 2866 1.784 - - 0.941 - - 0.843 - - -
32. adipor1b ENSDARG00000042717 1348 1.779 - - - - - 0.881 - - 0.898 adiponectin receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2896]
33. fam92a1 ENSDARG00000004436 658 1.778 - - 0.985 - - - 0.793 - - family with sequence similarity 92, member A1 [Source:ZFIN;Acc:ZDB-GENE-040801-123]
34. pcbp2 ENSDARG00000099039 4248 1.777 - - 0.989 - - - - - 0.788 poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
35. PPFIBP1_2 PPFIBP1_2 1274 1.774 - - - - - - 0.817 - 0.957
36. zgc:163030 ENSDARG00000069192 2963 1.771 - - 0.831 - - 0.940 - - - zgc:163030 [Source:ZFIN;Acc:ZDB-GENE-060810-77]
37. tm7sf3 ENSDARG00000093658 754 1.77 - 0.830 - - - 0.940 - - - transmembrane 7 superfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1770]
38. mrpl11 ENSDARG00000013075 2927 1.765 - - 0.976 - - - 0.789 - - mitochondrial ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040718-294]
39. rfc1 ENSDARG00000054799 1416 1.764 - - 0.963 - - - 0.801 - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
40. cdc20 ENSDARG00000100741 3264 1.758 - - - - - 0.917 - - 0.841 cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
41. npr3 ENSDARG00000035253, ENSDARG00000109797, ENSDARG00000110534 857 1.754 - 0.779 0.975 - - - - - - natriuretic peptide receptor 3 [Source:ZFIN;Acc:ZDB-GENE-060531-91]
42. myeov2 3351 1.75 - - - - - 0.883 - - 0.867 myeloma overexpressed 2
43. vta1 ENSDARG00000013732 6072 1.742 - - 0.983 - - 0.759 - - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
44. tmem189 ENSDARG00000042732 4004 1.741 - - 0.979 - - 0.762 - - - transmembrane protein 189 [Source:ZFIN;Acc:ZDB-GENE-041010-150]
45. mybbp1a ENSDARG00000078214 2458 1.738 - - 0.870 - - - 0.868 - - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
46. rab5if ENSDARG00000074790 8807 1.733 - 0.809 - - - - - - 0.924 RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
47. slc22a7a ENSDARG00000056028 2426 1.732 0.837 - - - - 0.895 - - - solute carrier family 22 (organic anion transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-050506-52]
48. MYOF ENSDARG00000006112 436 1.731 - - - 0.803 - 0.928 - - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
49. gltscr2 gltscr2 5763 1.731 - - 0.928 - - - - - 0.803
50. brd4 ENSDARG00000078904 5367 1.73 - - 0.957 - - 0.773 - - - bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
51. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 1.726 - - 0.941 - - - 0.785 - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
52. rfx2 ENSDARG00000013575 1275 1.714 - - - - - 0.776 - - 0.938 regulatory factor X, 2 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-050227-4]
53. ppp2r5eb ENSDARG00000069118 1902 1.712 - - - - - - 0.786 - 0.926 protein phosphatase 2, regulatory subunit B', epsilon isoform b [Source:ZFIN;Acc:ZDB-GENE-030904-6]
54. strbp ENSDARG00000021455 1279 1.712 - - - - - 0.769 - - 0.943 spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
55. bxdc2 ENSDARG00000098935 1348 1.712 - - 0.970 - - - 0.742 - - brix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060518-1]
56. myclb ENSDARG00000034956, ENSDARG00000110185 1466 1.71 - 0.728 0.982 - - - - - - MYCL proto-oncogene, bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-5561]
57. arhgap12b ENSDARG00000026482, ENSDARG00000109973 1142 1.71 0.731 - 0.979 - - - - - - Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]
58. pip5k1aa ENSDARG00000100396 1644 1.695 - - - - - 0.921 0.774 - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, a [Source:ZFIN;Acc:ZDB-GENE-050522-517]
59. atpif1a 6030 1.695 - - 0.947 - - - 0.748 - - ATPase inhibitory factor 1a
60. ptpmt1 ENSDARG00000013860 772 1.692 - - - 0.746 - - - - 0.946 protein tyrosine phosphatase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-070112-272]
61. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 1.688 - 0.781 - - - 0.907 - - - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
62. nucb1 ENSDARG00000054833 2009 1.688 - - - 0.737 - - - - 0.951 nucleobindin 1 [Source:ZFIN;Acc:ZDB-GENE-060825-222]
63. fitm2 ENSDARG00000034568, ENSDARG00000112035 1717 1.685 - - - - - 0.919 0.766 - - fat storage-inducing transmembrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-050508-5]
64. cbfa2t2 ENSDARG00000074337 4323 1.683 - - - - - 0.846 - - 0.837 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
65. ciao1 ENSDARG00000059212 1222 1.68 - 0.702 0.978 - - - - - - cytosolic iron-sulfur assembly component 1 [Source:ZFIN;Acc:ZDB-GENE-040426-839]
66. MRPS12_1 MRPS12_1 2714 1.677 - - - - - - 0.713 - 0.964
67. aco2 ENSDARG00000007294, ENSDARG00000111879 5162 1.675 - - 0.901 - - - - - 0.774 aconitase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-1390]
68. ddx49 ENSDARG00000012899 1604 1.675 - 0.705 0.970 - - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
69. si:dkey-13i19.8 ENSDARG00000093058 4617 1.673 - - - - - 0.780 - - 0.893 si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
70. prr14 ENSDARG00000089232 495 1.67 - - - - - - 0.773 - 0.897 proline rich 14 [Source:ZFIN;Acc:ZDB-GENE-030131-3785]
71. tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 1.668 - - - - - 0.850 - - 0.818 transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]
72. emc3 ENSDARG00000020607 3406 1.667 - - 0.961 - - 0.706 - - - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
73. mrpl45 ENSDARG00000044942, ENSDARG00000114416, ENSDARG00000115767 1599 1.667 - - 0.938 - - - 0.729 - - mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041]
74. CABZ01055500.1 CABZ01055500.1 748 1.665 - 0.705 - - - - - - 0.960
75. DUOXA1 DUOXA1 278 1.662 0.777 - - - - 0.885 - - -
76. CABZ01113191.1 CABZ01113191.1 388 1.661 - - - - - - 0.719 - 0.942
77. tnw 16679 1.646 - 0.728 0.918 - - - - - - tenascin W, transcript variant X2
78. hsbp1a ENSDARG00000069425 1086 1.644 - 0.793 - - - 0.851 - - - heat shock factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050320-136]
79. rassf8b ENSDARG00000045485 1568 1.635 0.770 - - - - - - - 0.865 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8b [Source:ZFIN;Acc:ZDB-GENE-040426-1338]
80. fosb ENSDARG00000055751 170 1.63 - - - - - 0.920 0.710 - - FBJ murine osteosarcoma viral oncogene homolog B [Source:ZFIN;Acc:ZDB-GENE-041114-181]
81. CU856359.1 CU856359.1 517 1.63 - - - - - 0.854 0.776 - -
82. rhogd ENSDARG00000030608, ENSDARG00000112157 599 1.626 - - - - - 0.918 0.708 - - ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
83. epn2 ENSDARG00000008377 5458 1.619 - - - - - 0.868 0.751 - - epsin 2 [Source:ZFIN;Acc:ZDB-GENE-071212-1]
84. optc ENSDARG00000014358 1295 1.618 - 0.735 - - - 0.883 - - - opticin [Source:ZFIN;Acc:ZDB-GENE-030131-1798]
85. nucks1b ENSDARG00000012777 4468 1.616 - - - - - - 0.723 - 0.893 nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
86. arhgap29b ENSDARG00000017748 812 1.608 - - - - - 0.898 0.710 - - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
87. smad5 ENSDARG00000037238 1684 1.604 - - - - - - 0.809 - 0.795 SMAD family member 5 [Source:ZFIN;Acc:ZDB-GENE-990603-9]
88. casc5 1487 1.602 0.793 - - - - 0.809 - - - cancer susceptibility candidate 5, transcript variant X3
89. lgals1l1 ENSDARG00000088711 4515 1.602 - 0.736 - - - 0.866 - - - lectin, galactoside-binding, soluble, 1 (galectin 1)-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4905]
90. hif1al ENSDARG00000100826 18627 1.601 - - 0.843 - - 0.758 - - - hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
91. CEP85 ENSDARG00000060215 537 1.596 - - - - - 0.844 0.752 - - centrosomal protein 85 [Source:ZFIN;Acc:ZDB-GENE-030131-1998]
92. GRAMD4 GRAMD4 1967 1.586 - - - - - - 0.827 - 0.759
93. pank4 ENSDARG00000098453, ENSDARG00000114951 662 1.583 - - - - - 0.809 0.774 - - pantothenate kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1592]
94. yipf3 ENSDARG00000020449 3312 1.583 - - - - - 0.734 - - 0.849 Yip1 domain family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6443]
95. snrnp200 ENSDARG00000077536, ENSDARG00000114486 4981 1.579 - 0.721 - - - 0.858 - - - small nuclear ribonucleoprotein 200 (U5) [Source:ZFIN;Acc:ZDB-GENE-081105-64]
96. ubr4 ENSDARG00000009549 5565 1.578 - - 0.869 - - - 0.709 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
97. si:ch73-173m3.3 si:ch73-173m3.3 425 1.576 - - - 0.727 - 0.849 - - -
98. arhgef4 ENSDARG00000012914 1464 1.568 - 0.819 - - - - 0.749 - - Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
99. hmgb3b ENSDARG00000006408 3442 1.567 - 0.771 - - - 0.796 - - - high mobility group box 3b [Source:ZFIN;Acc:ZDB-GENE-050417-290]
100. cldn5a ENSDARG00000043716 3865 1.567 0.728 - 0.839 - - - - - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]

There are 1761 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA