Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sh2d3ca

Gene Name Gene ID Reads Annotation
sh2d3ca ENSDARG00000028099 1037 SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]










Genes with expression patterns similar to sh2d3ca

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sh2d3ca ENSDARG00000028099 1037 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
2. smarca5 ENSDARG00000052348 15433 2.335 - - - - - 0.706 0.851 - 0.778 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
3. r3hdm1 ENSDARG00000101458 5241 2.331 - - - - - 0.771 0.804 - 0.756 R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
4. whsc1l1 8544 2.294 - - - 0.701 - - 0.833 - 0.760 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
5. insm1b ENSDARG00000053301 2032 2.288 - 0.710 0.711 - - - - - 0.867 insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
6. syt11b ENSDARG00000056105 578 2.261 - - - - - - 0.789 0.730 0.742 synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
7. smarcad1 smarcad1 1457 2.206 - - - - - 0.704 - 0.732 0.770
8. ercc1 ENSDARG00000031680 900 1.673 - - - 0.841 - - 0.832 - - excision repair cross-complementation group 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2606]
9. ezh2 ENSDARG00000010571 3273 1.623 - - - - - 0.841 - - 0.782 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
10. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.604 - - 0.785 - - - - - 0.819 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
11. whsc1 1701 1.595 - - 0.732 - - - 0.863 - - Wolf-Hirschhorn syndrome candidate 1
12. sulf2 sulf2 1286 1.595 - - - - - 0.757 0.838 - -
13. pcdh19 ENSDARG00000034344 2378 1.577 - - - - - 0.718 - - 0.859 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
14. ELOVL4 ELOVL4 3026 1.573 - - - - - - - 0.806 0.767
15. adrbk2 1037 1.57 - - - 0.803 - 0.767 - - - adrenergic, beta, receptor kinase 2, transcript variant X1
16. brd3b ENSDARG00000100129 6387 1.569 - - - 0.720 - 0.849 - - - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
17. kansl1a ENSDARG00000090895 2593 1.561 - - - - - - 0.782 - 0.779 KAT8 regulatory NSL complex subunit 1a [Source:ZFIN;Acc:ZDB-GENE-121219-5]
18. scdb ENSDARG00000030265 271 1.557 - - - 0.703 - - 0.854 - - stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]
19. marcksa ENSDARG00000004049 2518 1.556 - - - - - 0.775 - - 0.781 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
20. rab11fip4a ENSDARG00000090170 839 1.555 - 0.718 - - - - 0.837 - - RAB11 family interacting protein 4 (class II) a [Source:ZFIN;Acc:ZDB-GENE-040718-266]
21. hmgb2b ENSDARG00000053990 11519 1.552 - - - - - - 0.757 - 0.795 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
22. madd ENSDARG00000003495 830 1.552 - 0.744 - - - 0.808 - - - MAP-kinase activating death domain [Source:ZFIN;Acc:ZDB-GENE-030131-8076]
23. dut ENSDARG00000106529 3120 1.55 - 0.843 - - - - 0.707 - - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
24. si:dkey-286j15.1 ENSDARG00000040864 1718 1.541 - - - - - - 0.781 - 0.760 si:dkey-286j15.1 [Source:ZFIN;Acc:ZDB-GENE-060503-447]
25. si:ch73-46j18.5 ENSDARG00000092467 6002 1.535 - 0.783 - - - - 0.752 - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
26. sf1 ENSDARG00000008188 5142 1.53 - - - - - - 0.769 - 0.761 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
27. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.529 - - - - - - - 0.768 0.761 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
28. rtca ENSDARG00000002215 3558 1.524 - - - - - - 0.706 - 0.818 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
29. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.519 - - - - - - 0.722 - 0.797 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
30. ddx39ab ENSDARG00000015111 11619 1.518 - - - - - 0.747 - - 0.771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
31. HNRNPAB HNRNPAB 22267 1.517 - - - - - - 0.768 - 0.749
32. sin3b ENSDARG00000062472 2025 1.516 - - - - - - 0.774 - 0.742 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
33. srgap1 srgap1 2320 1.508 - - - - - 0.762 0.746 - -
34. dync1i1 ENSDARG00000060948 554 1.507 - - - - - 0.718 - - 0.789 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
35. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.507 - - - - - - 0.761 - 0.746 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
36. fam219aa ENSDARG00000016396 1788 1.505 - - - - - 0.801 - - 0.704 family with sequence similarity 219, member Aa [Source:ZFIN;Acc:ZDB-GENE-040801-110]
37. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.503 - - - - - - 0.700 - 0.803 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
38. tmpob ENSDARG00000022978 8121 1.501 - - 0.717 - - - - - 0.784 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
39. sf3a1 ENSDARG00000041887 6702 1.498 - - - - - - 0.788 - 0.710 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
40. snrpe ENSDARG00000033175 7462 1.496 - - - - - - 0.770 0.726 - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
41. brd3a ENSDARG00000006527 1636 1.49 - - 0.706 - - - 0.784 - - bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
42. rap1gap ENSDARG00000056554, ENSDARG00000110356 1284 1.49 - 0.766 - - - - 0.724 - - RAP1 GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-080402-9]
43. mllt11 ENSDARG00000071026 2518 1.485 - - - - - - - 0.754 0.731 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
44. si:dkey-19e4.5 ENSDARG00000089886 2562 1.482 - - - - - 0.703 0.779 - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
45. znf438 ENSDARG00000061311 524 1.477 - 0.716 - 0.761 - - - - - zinc finger protein 438 [Source:ZFIN;Acc:ZDB-GENE-060929-868]
46. SNRPG ENSDARG00000099667 18697 1.476 - - - - - - 0.712 - 0.764 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
47. RFX7 885 1.476 - - - - - 0.769 - 0.707 - regulatory factor X, 7
48. hmox2b ENSDARG00000078452, ENSDARG00000117010 884 1.474 - 0.756 - - - - 0.718 - - heme oxygenase 2b [Source:ZFIN;Acc:ZDB-GENE-091118-52]
49. scamp3 ENSDARG00000016765 540 1.473 - - - - - 0.737 0.736 - - secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
50. smc1al ENSDARG00000058203 8838 1.463 - - - - - - 0.741 - 0.722 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
51. hnrpl 6412 1.458 - - - - - 0.728 - - 0.730 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
52. arnt2 ENSDARG00000103697 5731 1.454 - - - - - 0.738 - - 0.716 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
53. fez1 ENSDARG00000023174 701 1.453 - - - - - - - 0.716 0.737 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
54. sp4 ENSDARG00000005186 2904 1.453 - - - 0.728 - - - - 0.725 sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
55. lbr ENSDARG00000014013 4835 1.449 - - - - - - 0.735 - 0.714 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
56. psma6a ENSDARG00000019398 2702 1.448 - - - - - 0.704 0.744 - - proteasome subunit alpha 6a [Source:ZFIN;Acc:ZDB-GENE-020326-1]
57. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.443 - - - - - 0.741 - - 0.702 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
58. lfng ENSDARG00000037879 11783 1.441 - - - - - 0.718 - - 0.723 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
59. htt ENSDARG00000052866 844 1.44 - - - 0.739 - - 0.701 - - huntingtin [Source:ZFIN;Acc:ZDB-GENE-990415-131]
60. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 1.433 - - - 0.718 - - 0.715 - - ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
61. CREBZF ENSDARG00000089787 4261 1.43 - 0.708 - - - - - - 0.722 CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
62. nr2f2 ENSDARG00000040926 5213 1.429 - - - - - 0.710 0.719 - - nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
63. arhgap11a ENSDARG00000100019 1642 1.427 - - - 0.714 - - 0.713 - - Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]
64. ebf1a 733 1.426 - - - - - - - 0.700 0.726 early B-cell factor 1a, transcript variant X4
65. smarcb1b ENSDARG00000011594 2413 1.423 - - - - - 0.716 0.707 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b [Source:ZFIN;Acc:ZDB-GENE-991008-16]
66. gpsm1a ENSDARG00000092517 784 1.421 - - - - - - - 0.715 0.706 G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
67. gnao1b ENSDARG00000036058, ENSDARG00000112730 1951 1.416 - - - - - 0.700 0.716 - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b [Source:ZFIN;Acc:ZDB-GENE-040426-1693]
68. mpnd ENSDARG00000061989 817 0.888 - - - - - 0.888 - - - MPN domain containing [Source:ZFIN;Acc:ZDB-GENE-060929-1162]
69. CABZ01057907.1 CABZ01057907.1 1140 0.887 - - - - - - 0.887 - -
70. wsb1 ENSDARG00000021343 3828 0.885 - 0.885 - - - - - - - WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
71. suv39h1b ENSDARG00000055753 1540 0.883 - - - - - - 0.883 - - suppressor of variegation 3-9 homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5105]
72. ilf3b ENSDARG00000105177 9473 0.878 - - - - - 0.878 - - - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
73. lbx1b ENSDARG00000018611 399 0.871 - - - 0.871 - - - - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
74. mcf2la ENSDARG00000075859 882 0.871 - - - - - - 0.871 - - mcf.2 cell line derived transforming sequence-like a [Source:ZFIN;Acc:ZDB-GENE-090312-122]
75. polr2gl ENSDARG00000056127 1771 0.867 - - - - - - 0.867 - - polymerase (RNA) II (DNA directed) polypeptide G-like [Source:ZFIN;Acc:ZDB-GENE-030131-2808]
76. rfc5 ENSDARG00000035634 974 0.867 - - - - - - 0.867 - - replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1]
77. aurkb ENSDARG00000037640 4874 0.866 - - - - - - 0.866 - - aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
78. fyco1a ENSDARG00000104500 652 0.865 - 0.865 - - - - - - - FYVE and coiled-coil domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-110411-276]
79. rasl10a ENSDARG00000062314 207 0.864 - - - - - 0.864 - - - RAS-like, family 10, member A [Source:ZFIN;Acc:ZDB-GENE-060526-273]
80. ss18 ENSDARG00000002970 2618 0.864 - - - - - - 0.864 - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
81. SHKBP1 ENSDARG00000105050 1139 0.862 - 0.862 - - - - - - - SH3KBP1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:19214]
82. por por 1211 0.86 - 0.860 - - - - - - -
83. oser1 ENSDARG00000024669 676 0.859 - 0.859 - - - - - - - oxidative stress responsive serine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1325]
84. haus5 ENSDARG00000019156 681 0.853 - - - - - - 0.853 - - HAUS augmin-like complex, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-041114-150]
85. si:ch73-299h12.3 ENSDARG00000101790 590 0.852 - 0.852 - - - - - - - si:ch73-299h12.3 [Source:ZFIN;Acc:ZDB-GENE-081031-93]
86. trim36 ENSDARG00000062794 785 0.851 - - - 0.851 - - - - - tripartite motif containing 36 [Source:ZFIN;Acc:ZDB-GENE-040426-2936]
87. b4galt2 ENSDARG00000077994 480 0.851 - - - - - - - 0.851 - UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-070912-258]
88. dlb ENSDARG00000004232 5120 0.851 - - - - - - - - 0.851 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
89. dnajc5ab ENSDARG00000004836 2923 0.849 - - - - - - 0.849 - - DnaJ (Hsp40) homolog, subfamily C, member 5ab [Source:ZFIN;Acc:ZDB-GENE-081021-2]
90. C25H11orf49 C25H11orf49 287 0.849 - - - - - - 0.849 - -
91. tcap ENSDARG00000007344 276 0.849 - - - - - - 0.849 - - titin-cap (telethonin) [Source:ZFIN;Acc:ZDB-GENE-070501-5]
92. hltf ENSDARG00000026053 115 0.847 - - - 0.847 - - - - - helicase-like transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-3306]
93. ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 0.844 - - - - - - - 0.844 - LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]
94. ing4 ENSDARG00000030716 5908 0.843 - - - - - 0.843 - - - inhibitor of growth family, member 4 [Source:ZFIN;Acc:ZDB-GENE-050522-47]
95. polr3glb ENSDARG00000013734 1199 0.84 - - - - - 0.840 - - - polymerase (RNA) III (DNA directed) polypeptide G like b [Source:ZFIN;Acc:ZDB-GENE-041010-32]
96. med4 ENSDARG00000041503 395 0.84 - 0.840 - - - - - - - mediator complex subunit 4 [Source:ZFIN;Acc:ZDB-GENE-050417-438]
97. u2af2a ENSDARG00000012505 2920 0.84 - - - - - - 0.840 - - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
98. ppp1cc 2361 0.84 - - - - - 0.840 - - - protein phosphatase 1, catalytic subunit, gamma isozyme
99. dla ENSDARG00000010791 9281 0.839 - - - - - - - - 0.839 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
100. chtf18 ENSDARG00000058480, ENSDARG00000111334 506 0.839 - - - - - - 0.839 - - CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-508]

There are 902 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA