Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sf3b4

Gene Name Gene ID Reads Annotation
sf3b4 ENSDARG00000018574 7470 splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]










Genes with expression patterns similar to sf3b4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sf3b4 ENSDARG00000018574 7470 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
2. txnipa ENSDARG00000036107 8863 2.859 0.988 - - - - 0.925 - - 0.946 thioredoxin interacting protein a [Source:ZFIN;Acc:ZDB-GENE-030804-10]
3. pes ENSDARG00000018902 3286 2.531 - 0.769 - - - 0.998 0.764 - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
4. evpla ENSDARG00000019808 7565 2.489 0.808 - - - - 0.945 0.736 - - envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
5. TNRC6C_2 TNRC6C_2 2444 2.466 - - 0.753 0.739 - - - - 0.974
6. nfya ENSDARG00000042004, ENSDARG00000114231 6606 2.352 - - 0.721 0.824 - - 0.807 - - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
7. cdkn2aipnl ENSDARG00000053395 5107 2.291 - 0.714 0.767 - - - 0.810 - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
8. mpi ENSDARG00000030786 3052 1.993 0.997 - - - - 0.996 - - - mannose phosphate isomerase [Source:ZFIN;Acc:ZDB-GENE-050904-6]
9. ndufv2 ENSDARG00000013044 3758 1.988 0.993 - - - - 0.995 - - - NADH:ubiquinone oxidoreductase core subunit V2 [Source:ZFIN;Acc:ZDB-GENE-040426-1713]
10. vac14 ENSDARG00000014303 941 1.986 0.988 - - - - 0.998 - - - vac14 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-82]
11. pdlim5b ENSDARG00000027600 4252 1.984 0.995 - - - - 0.989 - - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
12. mycla ENSDARG00000006003 1866 1.966 0.999 - - - - - - - 0.967 MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
13. plscr3b ENSDARG00000069432 8500 1.884 0.971 - - - - - - - 0.913 phospholipid scramblase 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2517]
14. anp32b ENSDARG00000023330 25013 1.857 0.938 - - - - - - - 0.919 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
15. actc1a ENSDARG00000042535, ENSDARG00000076126, ENSDARG00000116925 6499 1.821 0.960 - - - - 0.861 - - - actin, alpha, cardiac muscle 1a [Source:ZFIN;Acc:ZDB-GENE-040520-4]
16. eif2a ENSDARG00000101061 3800 1.811 0.990 - - - - - 0.821 - - eukaryotic translation initiation factor 2A [Source:ZFIN;Acc:ZDB-GENE-050626-52]
17. NUAK1_1 NUAK1_1 1782 1.799 0.995 - - - - - 0.804 - -
18. bet1 ENSDARG00000034885, ENSDARG00000113480 3627 1.792 - - - - - 0.996 0.796 - - Bet1 golgi vesicular membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-040625-3]
19. brd3b ENSDARG00000100129 6387 1.774 0.988 0.786 - - - - - - - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
20. ubc ENSDARG00000102632 36050 1.77 0.988 - - 0.782 - - - - - ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
21. txn2 ENSDARG00000034777 4071 1.767 - 0.785 - - - 0.982 - - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
22. hcfc1b ENSDARG00000012519 3633 1.767 - - - 0.786 - - - - 0.981 host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
23. NDUFA3 ENSDARG00000041400 7939 1.766 - - - - - - 0.811 - 0.955 NADH:ubiquinone oxidoreductase subunit A3 [Source:ZFIN;Acc:ZDB-GENE-040801-18]
24. myef2 ENSDARG00000059398 6050 1.764 0.986 - - - 0.778 - - - - myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
25. VPS37C ENSDARG00000031836 906 1.763 - - - - - 0.996 0.767 - - vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061110-126]
26. copb1 ENSDARG00000056557, ENSDARG00000116045 7395 1.757 - - - - - 0.985 0.772 - - coatomer protein complex, subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030219-38]
27. FAR2 FAR2 1459 1.756 - - - - - 0.998 0.758 - -
28. parp1 ENSDARG00000019529 6787 1.755 - - 0.760 - - 0.995 - - - poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
29. gse1 ENSDARG00000062020 2337 1.755 0.990 0.765 - - - - - - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
30. dnttip2 ENSDARG00000057648 2381 1.748 0.998 - - - - - 0.750 - - deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
31. slc43a1a ENSDARG00000037393, ENSDARG00000113118 5797 1.74 0.986 - - - - - 0.754 - - solute carrier family 43 (amino acid system L transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6327]
32. CASKIN2_1 CASKIN2_1 2299 1.739 - 0.742 - - - 0.997 - - -
33. lap3 ENSDARG00000061981 1188 1.736 - 0.740 - - - 0.996 - - - leucine aminopeptidase 3 [Source:ZFIN;Acc:ZDB-GENE-060719-1]
34. rasgef1ba ENSDARG00000033614, ENSDARG00000116057 4860 1.734 - - - - - 0.993 0.741 - - RasGEF domain family, member 1Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5783]
35. knop1 ENSDARG00000077721 2198 1.734 0.996 0.738 - - - - - - - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
36. snrpc ENSDARG00000009871 9567 1.727 - - - 0.757 - 0.970 - - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
37. CYHR1 ENSDARG00000061057 2625 1.726 - 0.767 - - - - - - 0.959 cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
38. baz1a ENSDARG00000063233, ENSDARG00000099745 563 1.726 0.999 - 0.727 - - - - - - bromodomain adjacent to zinc finger domain, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-6105]
39. rab1ba ENSDARG00000058044 5080 1.724 - 0.731 - - - 0.993 - - - zRAB1B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-873]
40. srp72 ENSDARG00000014139 5221 1.719 0.963 - - - - - 0.756 - - signal recognition particle 72 [Source:ZFIN;Acc:ZDB-GENE-030131-5546]
41. hnrnpua ENSDARG00000015206 4012 1.717 0.996 - - 0.721 - - - - - heterogeneous nuclear ribonucleoprotein Ua [Source:ZFIN;Acc:ZDB-GENE-030131-3731]
42. smc3 ENSDARG00000019000, ENSDARG00000112055 6553 1.711 0.991 - 0.720 - - - - - - structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]
43. CDIP1 ENSDARG00000076118 1294 1.71 0.999 0.711 - - - - - - - cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]
44. sox2 ENSDARG00000070913 2763 1.704 - - 0.718 - - - - - 0.986 SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
45. hypk ENSDARG00000059725 20584 1.704 0.849 - - - - 0.855 - - - huntingtin interacting protein K [Source:ZFIN;Acc:ZDB-GENE-080515-6]
46. nusap1 ENSDARG00000002403 6953 1.699 - - - - 0.790 - - - 0.909 nucleolar and spindle associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030827-5]
47. srsf3b ENSDARG00000059360 14888 1.699 0.967 - - - - - 0.732 - - serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
48. chrnd ENSDARG00000019342 2728 1.699 - 0.709 - - - 0.990 - - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
49. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 1.696 - - - - 0.737 0.959 - - - cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
50. jak1 ENSDARG00000020625, ENSDARG00000117102 5057 1.694 - - - - - 0.966 0.728 - - Janus kinase 1 [Source:ZFIN;Acc:ZDB-GENE-980526-142]
51. usp28 ENSDARG00000008880 1850 1.694 - 0.705 - - - 0.989 - - - ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
52. tmeff1b ENSDARG00000056740 11253 1.693 0.992 - - 0.701 - - - - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
53. zgc:110655 zgc:110655 4237 1.691 - 0.778 - - - - 0.913 - -
54. plagx ENSDARG00000036855 3768 1.688 - - - 0.701 - 0.987 - - - pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
55. sdhc ENSDARG00000038608, ENSDARG00000110542, ENSDARG00000114672 8862 1.687 0.958 0.729 - - - - - - - succinate dehydrogenase complex, subunit C, integral membrane protein [Source:ZFIN;Acc:ZDB-GENE-040801-26]
56. gmps ENSDARG00000079848 8217 1.687 - - - - - - 0.721 - 0.966 guanine monophosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1503]
57. zgc:158409 zgc:158409 21963 1.686 - 0.712 - - - - - - 0.974
58. amd1 ENSDARG00000043856, ENSDARG00000111778 9667 1.681 - - - - - 0.954 0.727 - - adenosylmethionine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-760]
59. rps17 ENSDARG00000104011 27028 1.674 0.742 - - - - 0.932 - - - ribosomal protein S17 [Source:ZFIN;Acc:ZDB-GENE-040426-1852]
60. odc1 ENSDARG00000007377 8957 1.673 - - - 0.744 - 0.929 - - - ornithine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-010816-1]
61. tshz3a ENSDARG00000087394 2455 1.668 - - 0.701 - - - - - 0.967 teashirt zinc finger homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-100322-1]
62. frem2a ENSDARG00000076856 11022 1.661 - - - - - 0.785 0.876 - - Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
63. zgc:63587 ENSDARG00000017140 8399 1.658 - - - - - 0.815 0.843 - - zgc:63587 [Source:ZFIN;Acc:ZDB-GENE-040426-1175]
64. atp6ap2 ENSDARG00000008735 5096 1.654 0.949 - - - - - 0.705 - - ATPase H+ transporting accessory protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1960]
65. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 50840 1.653 0.789 - - - - 0.864 - - - H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
66. papola ENSDARG00000009585 9567 1.643 - - 0.717 - - - - - 0.926 poly(A) polymerase alpha [Source:ZFIN;Acc:ZDB-GENE-030131-3507]
67. meis2b ENSDARG00000077840 5166 1.641 - 0.723 - - - - - - 0.918 Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
68. cdc42 ENSDARG00000044573 11795 1.641 - - - - - 0.934 0.707 - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
69. ogdha ENSDARG00000034270 10334 1.636 - 0.711 - - - - - - 0.925 oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) [Source:ZFIN;Acc:ZDB-GENE-030131-2143]
70. SNRPG ENSDARG00000099667 18697 1.636 0.869 - - 0.767 - - - - - small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
71. tmpob ENSDARG00000022978 8121 1.62 - 0.835 0.785 - - - - - - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
72. hnrpdl 14288 1.614 - - - - - 0.903 0.711 - - heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
73. ubr5 ENSDARG00000018192 9267 1.604 - 0.762 0.842 - - - - - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
74. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.593 - - 0.891 0.702 - - - - - serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
75. eif4ebp1 ENSDARG00000043608, ENSDARG00000113927 9982 1.585 - 0.825 - - - - 0.760 - - eukaryotic translation initiation factor 4E binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2332]
76. ckap5 ENSDARG00000102674 5068 1.585 - - 0.782 - - - 0.803 - - cytoskeleton associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-051120-174]
77. ppp1r3b ENSDARG00000044691, ENSDARG00000110639, ENSDARG00000114900 2990 1.581 - 0.734 - - - - 0.847 - - protein phosphatase 1, regulatory subunit 3B [Source:ZFIN;Acc:ZDB-GENE-030131-5496]
78. mta2 ENSDARG00000013031 2932 1.578 - - 0.786 0.792 - - - - - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
79. marcksl1a ENSDARG00000039034 37303 1.574 - - - - 0.732 0.842 - - - MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
80. fzd3a ENSDARG00000021664 1958 1.568 - - 0.712 0.856 - - - - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
81. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.561 - - - 0.728 - - 0.833 - - structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
82. rab2a ENSDARG00000020261 24540 1.558 0.782 - - - - - 0.776 - - RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
83. rbb4l ENSDARG00000015208 5542 1.554 - 0.760 0.794 - - - - - - retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
84. apex1 ENSDARG00000045843 6345 1.554 - - 0.834 - - - - 0.720 - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
85. dnmt1 ENSDARG00000030756 2741 1.553 - 0.728 - - - - 0.825 - - DNA (cytosine-5-)-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-990714-15]
86. gipc1 ENSDARG00000104483 2913 1.544 - - 0.799 - 0.745 - - - - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
87. top1l ENSDARG00000070545 40529 1.543 - - - 0.776 - 0.767 - - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
88. arl4ca ENSDARG00000057606 4686 1.54 - - - - - 0.746 0.794 - - ADP-ribosylation factor-like 4Ca [Source:ZFIN;Acc:ZDB-GENE-050417-265]
89. prmt1 ENSDARG00000010246 11311 1.537 - 0.733 0.804 - - - - - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
90. drap1 ENSDARG00000041203 6749 1.536 - - - - 0.713 - 0.823 - - DR1-associated protein 1 (negative cofactor 2 alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-400]
91. Mar-07 Mar-07 2926 1.533 - 0.780 - - - - 0.753 - -
92. phf21ab ENSDARG00000021378 1706 1.53 - - 0.728 - - - 0.802 - - PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]
93. notch3 ENSDARG00000052139 15033 1.521 - - - 0.709 - - 0.812 - - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
94. uhrf1 ENSDARG00000103409 3282 1.516 - - - - 0.733 - 0.783 - - ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
95. psmd12 ENSDARG00000052377 7763 1.516 - 0.753 - - - - - 0.763 - proteasome 26S subunit, non-ATPase 12 [Source:ZFIN;Acc:ZDB-GENE-030131-617]
96. mrpl27 ENSDARG00000032985 2158 1.515 - 0.708 - - - - 0.807 - - mitochondrial ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-050522-129]
97. smarcd1 ENSDARG00000019004 6028 1.512 - - - 0.744 0.768 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
98. u2af2b ENSDARG00000011740 6946 1.495 - - 0.779 - 0.716 - - - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
99. ndufb7 ENSDARG00000033789 5898 1.494 - 0.758 - - - - 0.736 - - NADH:ubiquinone oxidoreductase subunit B7 [Source:ZFIN;Acc:ZDB-GENE-040426-1886]
100. kdm1a ENSDARG00000060679 6152 1.494 - - 0.779 - - - - 0.715 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]

There are 1316 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA