Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sf3b3

Gene Name Gene ID Reads Annotation
sf3b3 ENSDARG00000103553 57 splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]










Genes with expression patterns similar to sf3b3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sf3b3 ENSDARG00000103553 57 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]
2. si:dkey-240n22.2 si:dkey-240n22.2 2 1.881 - - - - 0.881 - 1.000 - -
3. si:ch211-262n1.5 12 1.881 - - - - 0.881 - 1.000 - - si:ch211-262n1.5
4. im:7160594 ENSDARG00000070957 1 1.881 - - - - 0.881 - 1.000 - - im:7160594 [Source:ZFIN;Acc:ZDB-GENE-080917-43]
5. plscr3a ENSDARG00000093078 7 1.881 - - - - 0.881 - 1.000 - - phospholipid scramblase 3a [Source:ZFIN;Acc:ZDB-GENE-060531-17]
6. st6galnac5a ENSDARG00000039220 76 1.86 - - 0.911 - - - 0.949 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-070705-488]
7. chrna3 ENSDARG00000100991, ENSDARG00000116434 63 1.804 - - - - 0.881 - 0.923 - - cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]
8. CU184872.1 CU184872.1 15 1.787 - - - - - - 1.000 - 0.787
9. cdk5r1a ENSDARG00000037916 46 1.776 - - - - - 0.776 1.000 - - cyclin-dependent kinase 5, regulatory subunit 1a (p35) [Source:ZFIN;Acc:ZDB-GENE-080723-17]
10. TENM2 ENSDARG00000037122 48 1.748 - - - - 0.748 - 1.000 - - teneurin transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:29943]
11. si:dkey-193c22.1 ENSDARG00000093687 104 1.712 - - - - - 0.712 1.000 - - si:dkey-193c22.1 [Source:ZFIN;Acc:ZDB-GENE-030131-7957]
12. LMTK3 LMTK3 222 1.62 - - - - - - 0.884 0.736 -
13. si:dkeyp-117h8.2 ENSDARG00000011602 260 1.602 - - - - - 0.874 0.728 - - si:dkeyp-117h8.2 [Source:ZFIN;Acc:ZDB-GENE-041210-321]
14. csnk1e ENSDARG00000045150, ENSDARG00000112948 288 1.598 - - - - - 0.796 0.802 - - casein kinase 1, epsilon [Source:ZFIN;Acc:ZDB-GENE-030131-7873]
15. ncam1b ENSDARG00000007220 233 1.582 - - - - - 0.812 0.770 - - neural cell adhesion molecule 1b [Source:ZFIN;Acc:ZDB-GENE-010822-2]
16. gria1a ENSDARG00000021352, ENSDARG00000111182, ENSDARG00000111756, ENSDARG00000112683 169 1.548 - - - - - 0.786 0.762 - - glutamate receptor, ionotropic, AMPA 1a [Source:ZFIN;Acc:ZDB-GENE-020125-1]
17. lhx5 ENSDARG00000057936 785 1.52 - - - - - - 0.798 0.722 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
18. bon bon 20 1.516 - - - 0.721 0.795 - - - -
19. rd3 ENSDARG00000031600 1085 1.484 - - - - - 0.759 0.725 - - retinal degeneration 3, GUCY2D regulator [Source:ZFIN;Acc:ZDB-GENE-040724-103]
20. ccdc103 ENSDARG00000053455 81 1.473 - - 0.717 0.756 - - - - - coiled-coil domain containing 103 [Source:ZFIN;Acc:ZDB-GENE-040718-253]
21. THEM6 ENSDARG00000103914 49 1.462 - - 0.701 - - 0.761 - - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
22. ZFHX3 ENSDARG00000103057 7759 1.448 - - - - - - 0.718 0.730 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
23. unc93b1 ENSDARG00000069114 37 1.444 - - - - 0.735 0.709 - - - unc-93 homolog B1, TLR signaling regulator [Source:ZFIN;Acc:ZDB-GENE-130424-1]
24. SPOCK1 ENSDARG00000074644 794 1.415 - - - - - - 0.706 0.709 - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
25. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 1.413 - - - - - - 0.709 0.704 - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
26. glcea ENSDARG00000005095 33 1 - - - - - - 1.000 - - glucuronic acid epimerase a [Source:ZFIN;Acc:ZDB-GENE-040630-9]
27. nptx2b ENSDARG00000045164 5 1 - - - - - - 1.000 - - neuronal pentraxin IIb [Source:ZFIN;Acc:ZDB-GENE-110328-1]
28. si:dkey-154p10.3 ENSDARG00000068366 153 1 - - - - - - 1.000 - - si:dkey-154p10.3 [Source:ZFIN;Acc:ZDB-GENE-070912-380]
29. zgc:100951 ENSDARG00000111442 24 1 - - - - - - 1.000 - - zgc:100951 [Source:ZFIN;Acc:ZDB-GENE-040801-141]
30. nrg2b ENSDARG00000086585 100 1 - - - - - - 1.000 - - neuregulin 2b [Source:ZFIN;Acc:ZDB-GENE-090205-2]
31. cntnap5b ENSDARG00000075189 16 1 - - - - - - 1.000 - - contactin associated protein-like 5b [Source:ZFIN;Acc:ZDB-GENE-070705-209]
32. zgc:152951 ENSDARG00000068663, ENSDARG00000113135 22 1 - - - - - - 1.000 - - zgc:152951 [Source:ZFIN;Acc:ZDB-GENE-060929-416]
33. PRKD1 ENSDARG00000075949 15 1 - - - - - - 1.000 - - protein kinase D1 [Source:ZFIN;Acc:ZDB-GENE-080131-1]
34. CABZ01049058.1 CABZ01049058.1 7 1 - - - - - - 1.000 - -
35. atp8b2 ENSDARG00000099216 21 1 - - - - - - 1.000 - - ATPase phospholipid transporting 8B2 [Source:ZFIN;Acc:ZDB-GENE-030131-2474]
36. pgap1 ENSDARG00000062465 30 1 - - - - - - 1.000 - - post-GPI attachment to proteins 1 [Source:ZFIN;Acc:ZDB-GENE-090313-216]
37. si:ch211-267e7.22 si:ch211-267e7.22 34 1 - - - - - - 1.000 - -
38. si:dkey-9i5.1 si:dkey-9i5.1 36 1 - - - - - - 1.000 - -
39. gpr173 ENSDARG00000042922 238 1 - - - - - - 1.000 - - G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
40. ccdc64 ccdc64 2 1 - - - - - - 1.000 - -
41. gng2 ENSDARG00000056831 81 1 - - - - - - 1.000 - - guanine nucleotide binding protein (G protein), gamma 2 [Source:ZFIN;Acc:ZDB-GENE-050417-59]
42. si:ch211-76l23.5 si:ch211-76l23.5 26 1 - - - - - - 1.000 - -
43. smtlb ENSDARG00000017251 7 1 - - - - - - 1.000 - - somatolactin beta [Source:ZFIN;Acc:ZDB-GENE-060123-1]
44. dnm1a ENSDARG00000010042 43 1 - - - - - - 1.000 - - dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
45. 5S_rRNA_9 5S_rRNA_9 0 1 - - - - - - 1.000 - -
46. scd ENSDARG00000033662 146 1 - - - - - - 1.000 - - stearoyl-CoA desaturase (delta-9-desaturase) [Source:ZFIN;Acc:ZDB-GENE-031106-3]
47. klhl4 ENSDARG00000016531 47 1 - - - - - - 1.000 - - kelch-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-070410-63]
48. CU694952.2 CU694952.2 3 1 - - - - - - 1.000 - -
49. si:ch211-119d14.3 ENSDARG00000075332 12 1 - - - - - - 1.000 - - si:ch211-119d14.3 [Source:ZFIN;Acc:ZDB-GENE-081104-100]
50. mir124-6 64 1 - - - - - - 1.000 - - microRNA 124-6
51. il21 ENSDARG00000067847 2 1 - - - - - - 1.000 - - interleukin 21 [Source:ZFIN;Acc:ZDB-GENE-120510-4]
52. CABZ01060813.1 CABZ01060813.1 12 1 - - - - - - 1.000 - -
53. styxl1 ENSDARG00000026338 29 1 - - - - - - 1.000 - - serine/threonine/tyrosine interacting-like 1 [Source:ZFIN;Acc:ZDB-GENE-040912-45]
54. CR848025.1 ENSDARG00000100501 35 1 - - - - - - 1.000 - - si:dkey-202l22.4 [Source:NCBI gene;Acc:101882714]
55. NSUN6 ENSDARG00000103478 29 1 - - - - - - 1.000 - - NOL1/NOP2/Sun domain family, member 6 [Source:ZFIN;Acc:ZDB-GENE-080808-8]
56. smpdl3a ENSDARG00000053119 1 1 - - - - - - 1.000 - - sphingomyelin phosphodiesterase, acid-like 3A [Source:ZFIN;Acc:ZDB-GENE-050327-61]
57. si:ch211-222g23.5 si:ch211-222g23.5 0 1 - - - - - - 1.000 - -
58. zgc:153722 ENSDARG00000071044, ENSDARG00000110778, ENSDARG00000113166 70 1 - - - - - - 1.000 - - zgc:153722 [Source:ZFIN;Acc:ZDB-GENE-060929-84]
59. ntng2a ENSDARG00000077367 43 1 - - - - - - 1.000 - - netrin g2a [Source:ZFIN;Acc:ZDB-GENE-081105-186]
60. cacna1i ENSDARG00000070522 1 1 - - - - - - 1.000 - - calcium channel, voltage-dependent, T type, alpha 1I subunit [Source:ZFIN;Acc:ZDB-GENE-060503-324]
61. lzts1 ENSDARG00000075565 23 1 - - - - - - 1.000 - - leucine zipper, putative tumor suppressor 1 [Source:ZFIN;Acc:ZDB-GENE-081104-431]
62. mkks ENSDARG00000016139 70 1 - - - - - - 1.000 - - McKusick-Kaufman syndrome [Source:ZFIN;Acc:ZDB-GENE-040426-757]
63. CHD6 ENSDARG00000017244 219 1 - - - - - - 1.000 - - chromodomain helicase DNA binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-130530-559]
64. VSTM5 4 1 - - - - - - 1.000 - - V-set and transmembrane domain containing 5
65. lrit2 ENSDARG00000030626 69 1 - - - - - - 1.000 - - leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-160]
66. GPR153 ENSDARG00000087601 48 1 - - - - - - 1.000 - - G protein-coupled receptor 153 [Source:ZFIN;Acc:ZDB-GENE-050823-7]
67. PCDH10_1 PCDH10_1 57 1 - - - - - - 1.000 - -
68. PFKL PFKL 9 1 - - - - - - 1.000 - -
69. def6a ENSDARG00000012247 20 1 - - - - - - 1.000 - - differentially expressed in FDCP 6a homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-040426-1246]
70. CR339051.1 CR339051.1 9 1 - - - - 1.000 - - - -
71. CAMK1 CAMK1 28 1 - - - - - - 1.000 - -
72. CABZ01086354.1 CABZ01086354.1 22 1 - - - - - - 1.000 - -
73. kirrel3a ENSDARG00000075806 36 1 - - - - - - 1.000 - - kirre like nephrin family adhesion molecule 3a [Source:ZFIN;Acc:ZDB-GENE-091117-44]
74. megf8_2 ENSDARG00000079751, ENSDARG00000103934 32 1 - - - - - - 1.000 - - multiple EGF-like-domains 8 [Source:ZFIN;Acc:ZDB-GENE-090730-1]
75. grm1a ENSDARG00000026796 9 1 - - - - - - 1.000 - - glutamate receptor, metabotropic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7893]
76. si:dkey-122c11.4 si:dkey-122c11.4 13 1 - - - - - - 1.000 - -
77. BTBD17 BTBD17 53 1 - - - - - - 1.000 - -
78. ndrg1b ENSDARG00000010420 116 1 - - - - - - 1.000 - - N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
79. l3mbtl1a ENSDARG00000014828 119 1 - - - - - - 1.000 - - l(3)mbt-like 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090312-120]
80. ENSDARG00000089152 ENSDARG00000089152 12 1 - - - - - - 1.000 - -
81. PLCB1 2 1 - - - - - - 1.000 - - phospholipase C beta 1
82. lppr2a lppr2a 19 1 - - - - - - 1.000 - -
83. mir92b 95 1 - - - - - - 1.000 - - microRNA 92b
84. c1galt1a ENSDARG00000055585, ENSDARG00000112143 53 1 - - - - - - 1.000 - - core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a [Source:ZFIN;Acc:ZDB-GENE-061013-303]
85. ankrd29 ENSDARG00000057159, ENSDARG00000112325 64 1 - - - - - - 1.000 - - ankyrin repeat domain 29 [Source:ZFIN;Acc:ZDB-GENE-050208-655]
86. slitrk3b ENSDARG00000074739 19 1 - - - - - - 1.000 - - SLIT and NTRK-like family, member 3b [Source:ZFIN;Acc:ZDB-GENE-070912-352]
87. slc2a5 ENSDARG00000077875 5 1 - - - - - - 1.000 - - solute carrier family 2 (facilitated glucose/fructose transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-060222-2]
88. cacna1g ENSDARG00000089913 19 1 - - - - - - 1.000 - - calcium channel, voltage-dependent, T type, alpha 1G subunit [Source:ZFIN;Acc:ZDB-GENE-090514-2]
89. kcnj14 ENSDARG00000075914 38 1 - - - - - - 1.000 - - potassium inwardly-rectifying channel, subfamily J, member 14 [Source:ZFIN;Acc:ZDB-GENE-100922-48]
90. si:ch211-269m17.1 si:ch211-269m17.1 1 1 - - - - - - 1.000 - -
91. golim4a ENSDARG00000100977, ENSDARG00000106760, ENSDARG00000113393 144 1 - - - - - - 1.000 - - golgi integral membrane protein 4a [Source:ZFIN;Acc:ZDB-GENE-041026-2]
92. si:dkey-121n8.3 si:dkey-121n8.3 0 1 - - - - - - 1.000 - -
93. grik4 ENSDARG00000026753 22 1 - - - - - - 1.000 - - glutamate receptor, ionotropic, kainate 4 [Source:ZFIN;Acc:ZDB-GENE-070821-5]
94. si:dkey-121b10.8 si:dkey-121b10.8 3 1 - - - - - - 1.000 - -
95. si:dkey-27n6.9 51 1 - - - - - - 1.000 - - si:dkey-27n6.9, transcript variant X4
96. FAM161A ENSDARG00000089742 41 1 - - - - - - 1.000 - - family with sequence similarity 161, member A [Source:ZFIN;Acc:ZDB-GENE-110310-1]
97. ACAP2 ENSDARG00000060783 9 1 - - - - - - 1.000 - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 [Source:ZFIN;Acc:ZDB-GENE-050208-640]
98. prph2a ENSDARG00000038018 2 1 - - - - - - 1.000 - - peripherin 2a (retinal degeneration, slow) [Source:ZFIN;Acc:ZDB-GENE-000616-8]
99. si:ch211-132b12.7 ENSDARG00000068374 30 1 - - - - - - 1.000 - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
100. si:dkey-250k15.7 ENSDARG00000095048 1 1 - - - - - - 1.000 - - si:dkey-250k15.7 [Source:ZFIN;Acc:ZDB-GENE-100921-33]

There are 1100 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA