Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sf3a3

Gene Name Gene ID Reads Annotation
sf3a3 ENSDARG00000100114 4511 splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]










Genes with expression patterns similar to sf3a3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sf3a3 ENSDARG00000100114 4511 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
2. tmed4 ENSDARG00000024954 3476 2.623 - - 0.930 - - 0.829 - 0.864 - transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
3. ZNF576 ZNF576 1447 2.613 - - 0.925 - - 0.765 - 0.923 -
4. plxnb1b ENSDARG00000017211 4676 2.58 - - - - - 0.878 0.761 0.941 - plexin b1b [Source:ZFIN;Acc:ZDB-GENE-090812-4]
5. ube2a ENSDARG00000098466 12765 2.565 - - 0.762 - - - 0.831 - 0.972 ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
6. me3 ENSDARG00000002305 3305 2.476 - - - - - 0.847 0.798 0.831 - malic enzyme 3, NADP(+)-dependent, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-041111-294]
7. gabarapa ENSDARG00000035557, ENSDARG00000110690 6723 2.474 - 0.735 - - - 0.758 - - 0.981 GABA(A) receptor-associated protein a [Source:ZFIN;Acc:ZDB-GENE-030131-5174]
8. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 2.444 - - 0.866 - - - 0.723 0.855 - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
9. pik3r2 ENSDARG00000018060, ENSDARG00000112255 3899 2.417 - 0.773 - - - 0.813 - 0.831 - phosphoinositide-3-kinase, regulatory subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040309-1]
10. nudt3a ENSDARG00000016256 2713 2.398 - - 0.910 - - - 0.730 0.758 - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
11. rfx2 ENSDARG00000013575 1275 2.396 - 0.722 - - - 0.803 - 0.871 - regulatory factor X, 2 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-050227-4]
12. ssbp3b ENSDARG00000030155 7163 2.395 - 0.704 0.893 - - - 0.798 - - single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
13. mdm4 ENSDARG00000057513 1954 2.321 - - - - - 0.767 0.712 0.842 - MDM4, p53 regulator [Source:ZFIN;Acc:ZDB-GENE-030131-6872]
14. gstm gstm 4064 2.314 - - - - - 0.789 0.711 0.814 -
15. puf60a ENSDARG00000032175 5618 2.305 - 0.734 - - - 0.821 0.750 - - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
16. MAPRE2 ENSDARG00000099943 3041 2.229 - - - - - 0.798 0.706 0.725 - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
17. eprs ENSDARG00000060494 4729 2.228 0.712 - - - - - 0.721 0.795 - glutamyl-prolyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-638]
18. eif3ja ENSDARG00000012603 6324 2.176 - 0.730 - - - 0.726 0.720 - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
19. CUL3 CUL3 1133 2.158 0.710 - - - - 0.744 0.704 - -
20. zmiz1a ENSDARG00000074502 3920 1.906 - - 0.924 - - - - - 0.982 zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
21. e2f4 ENSDARG00000101578, ENSDARG00000109320 1783 1.893 - - 0.945 - - - - 0.948 - E2F transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2773]
22. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 1.865 - - 0.950 - - - - 0.915 - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
23. aes ENSDARG00000021805, ENSDARG00000115836 1533 1.855 - - 0.929 - - - - 0.926 - amino-terminal enhancer of split [Source:ZFIN;Acc:ZDB-GENE-040426-1409]
24. C3H16orf72 C3H16orf72 2059 1.854 - - - - - - - 0.870 0.984
25. nf1b ENSDARG00000004184 548 1.838 - - 0.927 - - - - 0.911 - neurofibromin 1b [Source:ZFIN;Acc:ZDB-GENE-091111-4]
26. hnrpdl 14288 1.828 - - 0.915 - - - - - 0.913 heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
27. si:dkey-19e4.5 ENSDARG00000089886 2562 1.828 - - 0.937 - - - - 0.891 - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
28. SVIL SVIL 2589 1.826 - - 0.925 - - - - 0.901 -
29. cldn5a ENSDARG00000043716 3865 1.811 - - 0.857 - - - - 0.954 - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
30. arih1 ENSDARG00000003616, ENSDARG00000109413 1739 1.81 - - 0.926 - - - - 0.884 - ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5213]
31. znf410 ENSDARG00000008218 1807 1.807 - - - - - - - 0.823 0.984 zinc finger protein 410 [Source:ZFIN;Acc:ZDB-GENE-040426-1817]
32. dlb ENSDARG00000004232 5120 1.803 - - 0.917 - - - - 0.886 - deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
33. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 1.795 - - 0.940 - - 0.855 - - - transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
34. pfn2l ENSDARG00000012682 21690 1.784 - - - - - - 0.813 - 0.971 profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
35. rac1 rac1 7341 1.761 - - - - - - 0.797 - 0.964
36. plcg1 ENSDARG00000038442 5324 1.751 - - - - - - 0.832 0.919 - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
37. rhag ENSDARG00000019253 2974 1.744 - - - - - - - 0.763 0.981 Rh associated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-8229]
38. cx43.4 ENSDARG00000007099 16369 1.742 - - - - - - - 0.811 0.931 connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
39. coe2 coe2 1633 1.735 - - 0.932 - - - 0.803 - -
40. pip5k1ab ENSDARG00000024642 1988 1.727 - - 0.925 - - 0.802 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
41. ncalda ENSDARG00000070688 5069 1.724 - - 0.950 - - 0.774 - - - neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
42. gpr61 ENSDARG00000055570 128 1.722 - - - - - - 0.790 0.932 - G protein-coupled receptor 61 [Source:ZFIN;Acc:ZDB-GENE-081104-239]
43. PRRG1 ENSDARG00000043283 2779 1.718 - - - - - - 0.814 0.904 - proline rich Gla (G-carboxyglutamic acid) 1 [Source:ZFIN;Acc:ZDB-GENE-041010-20]
44. znf740 znf740 2458 1.716 - - - - - 0.797 - 0.919 -
45. plagx ENSDARG00000036855 3768 1.713 - - - - - - 0.860 0.853 - pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
46. SSBP4 ENSDARG00000056483 5156 1.71 - - - - - - 0.732 - 0.978 single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
47. safb ENSDARG00000020467 5608 1.707 - - - - - 0.844 - 0.863 - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
48. gnl3l ENSDARG00000020595, ENSDARG00000109309 3582 1.704 - - - - - 0.720 - - 0.984 guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:ZFIN;Acc:ZDB-GENE-040723-1]
49. npr3 ENSDARG00000035253, ENSDARG00000109797, ENSDARG00000110534 857 1.7 - - 0.933 - - - 0.767 - - natriuretic peptide receptor 3 [Source:ZFIN;Acc:ZDB-GENE-060531-91]
50. emc3 ENSDARG00000020607 3406 1.698 - - 0.935 - - 0.763 - - - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
51. nxf1 ENSDARG00000055076 3251 1.697 - - 0.912 - - - 0.785 - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
52. prep ENSDARG00000057151 3016 1.696 - - 0.944 - - 0.752 - - - prolyl endopeptidase [Source:ZFIN;Acc:ZDB-GENE-050522-14]
53. sfxn3 ENSDARG00000057374, ENSDARG00000112320 1766 1.695 - - 0.926 - - - - 0.769 - sideroflexin 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2092]
54. prdx3 ENSDARG00000032102, ENSDARG00000114240 10034 1.693 - - 0.860 - - - 0.833 - - peroxiredoxin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-18]
55. hnrnpul1 ENSDARG00000040564 6550 1.693 - - 0.959 - - - - 0.734 - heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
56. PELP1 ENSDARG00000079313 5771 1.686 - - - - - 0.830 - 0.856 - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
57. rhot2 ENSDARG00000056328 1123 1.682 - - - - - 0.763 - 0.919 - ras homolog family member T2 [Source:ZFIN;Acc:ZDB-GENE-051120-96]
58. eftud2 ENSDARG00000012261 3081 1.68 0.751 - 0.929 - - - - - - elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
59. lgals1l1 ENSDARG00000088711 4515 1.677 - - - - - 0.719 - - 0.958 lectin, galactoside-binding, soluble, 1 (galectin 1)-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4905]
60. qki2 ENSDARG00000010018 2230 1.677 - 0.763 - - - - - 0.914 - QKI, KH domain containing, RNA binding 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1462]
61. snrpb ENSDARG00000011125 11729 1.676 - - - - - 0.707 - - 0.969 small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
62. faf1 ENSDARG00000022418 2922 1.674 - - 0.921 - - 0.753 - - - Fas (TNFRSF6) associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2863]
63. pdss2 ENSDARG00000012563 984 1.673 - - 0.927 - - - 0.746 - - prenyl (decaprenyl) diphosphate synthase, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040718-43]
64. ppapdc1b ppapdc1b 2866 1.672 - - 0.919 - - 0.753 - - -
65. dvl2 ENSDARG00000056184 1525 1.672 - - - - - 0.795 - 0.877 - dishevelled segment polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-041118-20]
66. myo1b ENSDARG00000024694 1761 1.671 - - 0.929 - - - 0.742 - - myosin IB [Source:ZFIN;Acc:ZDB-GENE-030131-695]
67. setd8b 2528 1.671 - - 0.941 - - 0.730 - - - SET domain containing (lysine methyltransferase) 8b
68. stk17b ENSDARG00000014348, ENSDARG00000114208 1447 1.669 - - - - - 0.763 - 0.906 - serine/threonine kinase 17b (apoptosis-inducing) [Source:ZFIN;Acc:ZDB-GENE-040426-1499]
69. psen2 ENSDARG00000015540 832 1.669 - - 0.916 - - - - 0.753 - presenilin 2 [Source:ZFIN;Acc:ZDB-GENE-000330-9]
70. ddx19 ENSDARG00000005699 4602 1.668 - - - - - - 0.820 0.848 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
71. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.667 0.740 - 0.927 - - - - - - TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
72. ythdf1 ENSDARG00000016447 3391 1.665 - 0.743 0.922 - - - - - - YTH N(6)-methyladenosine RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2786]
73. carm1 ENSDARG00000018698 5599 1.665 - 0.738 0.927 - - - - - - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
74. POLE4 ENSDARG00000013016 848 1.664 - - - - - - 0.789 0.875 - polymerase (DNA-directed), epsilon 4, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-050522-309]
75. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 1.664 - - - - - - 0.769 0.895 - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
76. mxd3 ENSDARG00000098350 3040 1.664 - - - - - 0.826 - 0.838 - MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
77. smurf2 ENSDARG00000038067 2057 1.661 - - - - - 0.797 - 0.864 - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
78. tnikb ENSDARG00000009031 1836 1.659 - 0.742 0.917 - - - - - - TRAF2 and NCK interacting kinase b [Source:ZFIN;Acc:ZDB-GENE-051113-320]
79. camsap1b ENSDARG00000035122 492 1.656 - - - - - - 0.759 0.897 - calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
80. srp9 ENSDARG00000042851 3254 1.655 - - 0.883 - - - - 0.772 - signal recognition particle 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1106]
81. dnajc5ga ENSDARG00000041896 1478 1.652 - - - - - 0.731 - 0.921 - DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a [Source:ZFIN;Acc:ZDB-GENE-030131-1583]
82. psmd8 ENSDARG00000020454 6645 1.651 - - - - - 0.871 0.780 - - proteasome 26S subunit, non-ATPase 8 [Source:ZFIN;Acc:ZDB-GENE-040625-136]
83. nol11 ENSDARG00000026767 2528 1.65 - - - - - - 0.732 0.918 - nucleolar protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-419]
84. knop1 ENSDARG00000077721 2198 1.65 - - - - - 0.770 - 0.880 - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
85. nme3 ENSDARG00000100990 3889 1.649 - - 0.917 0.732 - - - - - NME/NM23 nucleoside diphosphate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-000210-34]
86. si:ch211-67e16.4 ENSDARG00000086317 609 1.649 - - - - - - 0.730 0.919 - si:ch211-67e16.4 [Source:ZFIN;Acc:ZDB-GENE-070912-311]
87. ftr78 ftr78 273 1.648 - - 0.921 - - - 0.727 - -
88. pelo ENSDARG00000055477 1927 1.644 - - - - - - 0.762 0.882 - pelota mRNA surveillance and ribosome rescue factor [Source:ZFIN;Acc:ZDB-GENE-040426-1074]
89. prmt1 ENSDARG00000010246 11311 1.642 0.706 - - - - - - 0.936 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
90. znf292b ENSDARG00000043973 3791 1.641 - - 0.924 - - - 0.717 - - zinc finger protein 292b [Source:ZFIN;Acc:ZDB-GENE-030131-9559]
91. mtmr3 ENSDARG00000093364, ENSDARG00000098201 1541 1.64 - - - - - 0.707 - 0.933 - myotubularin related protein 3 [Source:ZFIN;Acc:ZDB-GENE-091204-465]
92. xpo1a ENSDARG00000078041 3544 1.64 - - 0.922 0.718 - - - - - exportin 1 (CRM1 homolog, yeast) a [Source:ZFIN;Acc:ZDB-GENE-050309-201]
93. ube2nb ENSDARG00000045877 4583 1.637 - 0.768 0.869 - - - - - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
94. tada3l ENSDARG00000058220, ENSDARG00000113214, ENSDARG00000115305 2257 1.637 - - - - - - 0.706 0.931 - transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:ZFIN;Acc:ZDB-GENE-030131-6725]
95. KIAA0355 3250 1.636 - - 0.906 - - - 0.730 - - KIAA0355 ortholog, transcript variant X1
96. kpnb3 ENSDARG00000040245 7967 1.636 - 0.880 - - - - 0.756 - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
97. FAM171A2 FAM171A2 707 1.633 - - - - - 0.782 - 0.851 -
98. pank4 ENSDARG00000098453, ENSDARG00000114951 662 1.633 - - - - - 0.760 - 0.873 - pantothenate kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1592]
99. snrpd3l ENSDARG00000076283 7655 1.633 - - - - - 0.845 0.788 - - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
100. atpif1a 6030 1.632 - - 0.908 - - - 0.724 - - ATPase inhibitory factor 1a

There are 1963 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA