Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sf3a1

Gene Name Gene ID Reads Annotation
sf3a1 ENSDARG00000041887 6702 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]










Genes with expression patterns similar to sf3a1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sf3a1 ENSDARG00000041887 6702 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
2. r3hdm1 ENSDARG00000101458 5241 3.216 - 0.900 - - - 0.745 0.816 - 0.755 R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
3. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 2.985 0.712 0.864 - - - - - 0.703 0.706 cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
4. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 2.711 - - - 0.995 0.876 - - - 0.840 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
5. CR954963.1 ENSDARG00000097153 1135 2.646 - - - - 0.990 - 0.814 0.842 -
6. aurkb ENSDARG00000037640 4874 2.645 - 0.906 0.968 - - - 0.771 - - aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
7. luc7l3 ENSDARG00000014366 4416 2.607 - - - 0.999 - - 0.814 - 0.794 LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
8. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 2.598 - - - - 0.968 - 0.825 - 0.805 phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
9. ddx19 ENSDARG00000005699 4602 2.522 - 0.897 - - - - - 0.833 0.792 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
10. nkain1 ENSDARG00000006859 1961 2.484 - - - - 0.991 - - 0.715 0.778 sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
11. whsc1 1701 2.446 - - - - - - 0.878 0.847 0.721 Wolf-Hirschhorn syndrome candidate 1
12. paqr3a ENSDARG00000017703, ENSDARG00000117061 2018 2.44 - - - - 0.987 - 0.752 - 0.701 progestin and adipoQ receptor family member IIIa [Source:ZFIN;Acc:ZDB-GENE-040426-1667]
13. kansl3 ENSDARG00000029556 2487 2.41 - - - - 0.970 - - 0.703 0.737 KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
14. sarnp ENSDARG00000059357 4768 2.354 - - - - - 0.791 0.841 0.722 - SAP domain containing ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-050522-161]
15. smarca5 ENSDARG00000052348 15433 2.354 - - - 0.749 - - 0.802 - 0.803 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
16. rbm14a ENSDARG00000012723, ENSDARG00000114603 3802 2.332 - - - - 0.846 - - 0.702 0.784 RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
17. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 2.313 - - - - - - 0.739 0.839 0.735 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
18. GANAB_2 GANAB_2 3210 2.313 - - - - - - 0.881 0.728 0.704
19. cdk5 ENSDARG00000056683 1998 2.304 - - - - - 0.839 0.759 - 0.706 cyclin-dependent kinase 5 [Source:ZFIN;Acc:ZDB-GENE-010131-2]
20. cdc14b ENSDARG00000021483 4958 1.976 - - - 0.997 0.979 - - - - cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
21. smarcal1 ENSDARG00000102265 1921 1.965 - - 0.973 - 0.992 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:ZFIN;Acc:ZDB-GENE-041210-303]
22. CWC15 ENSDARG00000013382 8969 1.933 - - - 0.994 0.939 - - - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
23. zgc:77849 ENSDARG00000012458, ENSDARG00000116615 21205 1.927 - - - 0.999 0.928 - - - - zgc:77849 [Source:ZFIN;Acc:ZDB-GENE-030131-1107]
24. sf3a2 ENSDARG00000021107 2929 1.893 - 0.907 - - 0.986 - - - - splicing factor 3a, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-897]
25. klc2 3058 1.885 - 0.905 - - 0.980 - - - - kinesin light chain 2
26. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.85 - - - - 0.991 - - 0.859 - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
27. calm1b ENSDARG00000034187 13158 1.848 - 0.858 - 0.990 - - - - - calmodulin 1b [Source:ZFIN;Acc:ZDB-GENE-030804-2]
28. azi1_1 azi1_1 1375 1.834 - - - - 0.990 - 0.844 - -
29. rqcd1 2301 1.834 - - - - 0.987 - 0.847 - - RCD1 required for cell differentiation1 homolog (S. pombe)
30. rps20 ENSDARG00000036044 121457 1.827 - - 0.963 0.864 - - - - - ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
31. plxnb1b ENSDARG00000017211 4676 1.825 - - - - 0.971 - - 0.854 - plexin b1b [Source:ZFIN;Acc:ZDB-GENE-090812-4]
32. ube2e1 ENSDARG00000116649 10656 1.825 - - 0.966 - 0.859 - - - - ubiquitin-conjugating enzyme E2E 1 [Source:ZFIN;Acc:ZDB-GENE-071004-16]
33. snrnp70 ENSDARG00000077126 5921 1.824 - - - - 0.984 - - 0.840 - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
34. hnrnpub ENSDARG00000004735 16496 1.814 - 0.990 - - - - - - 0.824 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
35. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.804 - - - 0.999 - - - - 0.805 down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
36. ubtf ENSDARG00000035066 4070 1.797 - - - - 0.973 - - - 0.824 upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
37. mutyh 512 1.786 - - - - 0.991 - 0.795 - - mutY DNA glycosylase
38. ndfip2 ENSDARG00000033928 3129 1.782 - - - - 0.987 - 0.795 - - Nedd4 family interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2662]
39. pola2 ENSDARG00000015070 2286 1.782 - - - 0.999 - - 0.783 - - polymerase (DNA directed), alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-778]
40. bag1 ENSDARG00000020895 1660 1.775 - - - - 0.986 - 0.789 - - BCL2 associated athanogene 1 [Source:ZFIN;Acc:ZDB-GENE-050309-89]
41. rpsa ENSDARG00000019181 93440 1.771 - - 0.925 0.846 - - - - - ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
42. slc37a2 ENSDARG00000023394 3997 1.77 - - - - 0.973 0.797 - - - solute carrier family 37 (glucose-6-phosphate transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1949]
43. ncoa5 ENSDARG00000016345 5765 1.768 - - - 0.998 - 0.770 - - - nuclear receptor coactivator 5 [Source:ZFIN;Acc:ZDB-GENE-040912-155]
44. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 1.764 - - 0.947 - - - - - 0.817 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
45. arhgap1 ENSDARG00000024324 6904 1.758 - - 0.968 - - - - - 0.790 Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
46. rtn3_1 ENSDARG00000091348 3290 1.752 - - - - 0.978 - 0.774 - - reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]
47. serinc5 ENSDARG00000008153 2863 1.751 - 0.909 - - - - 0.842 - - serine incorporator 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2918]
48. polr2l ENSDARG00000058349, ENSDARG00000113402 3300 1.748 - 0.903 - - - - - 0.845 - polymerase (RNA) II (DNA directed) polypeptide L [Source:ZFIN;Acc:ZDB-GENE-050522-181]
49. notch1b ENSDARG00000052094 7874 1.743 - 0.908 - - - - - 0.835 - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
50. cks1b ENSDARG00000007971 2739 1.743 - - - - 0.985 0.758 - - - CDC28 protein kinase regulatory subunit 1B [Source:ZFIN;Acc:ZDB-GENE-040801-112]
51. srsf3b ENSDARG00000059360 14888 1.743 - - 0.967 - - - - - 0.776 serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
52. CORO1C CORO1C 5554 1.735 - - - - 0.970 0.765 - - -
53. ost4 ENSDARG00000096118 7679 1.735 - - 0.947 - - - 0.788 - - oligosaccharyltransferase complex subunit 4 (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-110307-1]
54. NRD1 NRD1 3486 1.731 - 0.909 - - - - - 0.822 -
55. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 1.722 - - - - 0.983 - - - 0.739 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
56. rplp2l ENSDARG00000011201 77026 1.718 - - 0.965 0.753 - - - - - ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
57. med29 ENSDARG00000026448, ENSDARG00000109733 972 1.716 - - - - - - 0.819 0.897 - mediator complex subunit 29 [Source:ZFIN;Acc:ZDB-GENE-021217-1]
58. ranbp1 ENSDARG00000014817 3371 1.715 - - - 0.999 - - - - 0.716 RAN binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2548]
59. pik3c2b ENSDARG00000086927 864 1.714 - - - - - - 0.800 0.914 - phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
60. apex1 ENSDARG00000045843 6345 1.709 - - - - 0.915 - - 0.794 - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
61. chchd2 ENSDARG00000059304, ENSDARG00000112202 7438 1.708 - 0.878 - - - 0.830 - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1737]
62. yy1a ENSDARG00000042796 4982 1.701 - - - - 0.980 0.721 - - - YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
63. timmdc1 ENSDARG00000053466 2179 1.695 - - 0.973 - - 0.722 - - - translocase of inner mitochondrial membrane domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-369]
64. rab11ba ENSDARG00000041878 4651 1.692 0.712 - - - 0.980 - - - - RAB11B, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040426-2860]
65. commd4 ENSDARG00000061946 3281 1.692 - - 0.972 - - 0.720 - - - COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
66. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 1.692 - - - - 0.831 - - 0.861 - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
67. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 1.691 - - - 0.985 0.706 - - - - ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
68. znf609 znf609 1049 1.69 - - - - 0.989 0.701 - - -
69. rpl13 ENSDARG00000099380 20663 1.688 - 0.879 - - 0.809 - - - - ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-031007-1]
70. taf5 ENSDARG00000018325 1363 1.68 - - - - - - 0.912 0.768 - TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-051120-180]
71. fam219aa ENSDARG00000016396 1788 1.68 - - - - - - 0.811 0.869 - family with sequence similarity 219, member Aa [Source:ZFIN;Acc:ZDB-GENE-040801-110]
72. AP3B2 1874 1.68 - - - - 0.942 - - - 0.738 adaptor related protein complex 3 beta 2 subunit, transcript variant X2
73. rcor3 ENSDARG00000004502 680 1.678 - - - - - 0.787 0.891 - - REST corepressor 3 [Source:ZFIN;Acc:ZDB-GENE-050208-371]
74. smc1al ENSDARG00000058203 8838 1.676 - - - - 0.904 - - - 0.772 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
75. safb ENSDARG00000020467 5608 1.676 - - - - - - - 0.845 0.831 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
76. ddx27 ENSDARG00000091831 1471 1.672 - 0.909 - - - - - 0.763 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
77. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 1.672 - - - - 0.957 - - - 0.715 exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]
78. sumo3a ENSDARG00000028119 13447 1.671 - 0.882 - - - - - - 0.789 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
79. zgc:100920 ENSDARG00000042961, ENSDARG00000112929 1384 1.663 - - - - - - - 0.889 0.774 zgc:100920 [Source:ZFIN;Acc:ZDB-GENE-040801-156]
80. tgif1 ENSDARG00000059337 4020 1.663 - - - - 0.850 - - - 0.813 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
81. cdk2ap2 ENSDARG00000103145 8024 1.655 - - - - - - 0.847 - 0.808 cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
82. hif1an ENSDARG00000031915 2098 1.654 - - - - - - - 0.931 0.723 hypoxia inducible factor 1 subunit alpha inhibitor [Source:ZFIN;Acc:ZDB-GENE-030826-19]
83. dlb ENSDARG00000004232 5120 1.652 - - - - - - - 0.874 0.778 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
84. rbb4 rbb4 15541 1.652 - - - - - - - 0.868 0.784
85. nsd1a ENSDARG00000060016 2974 1.651 - - - - - - 0.759 0.892 - nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
86. trrap ENSDARG00000100623 3429 1.649 - - - - - - 0.783 0.866 - transformation/transcription domain-associated protein [Source:ZFIN;Acc:ZDB-GENE-050809-47]
87. ebag9 ENSDARG00000040021 2217 1.647 - 0.898 - - - - 0.749 - - estrogen receptor binding site associated, antigen, 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1093]
88. zcchc10 ENSDARG00000091092 1333 1.647 - - - - - - 0.811 0.836 - zinc finger, CCHC domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030131-6172]
89. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 1.644 - - - - - - - 0.883 0.761 nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
90. pcf11 ENSDARG00000044625, ENSDARG00000114082 1885 1.643 - 0.904 - - - 0.739 - - - PCF11, cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]
91. g3bp1 ENSDARG00000017741 7622 1.642 - - - - - 0.866 - - 0.776 GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
92. mcm2 ENSDARG00000102798 8148 1.64 - 0.904 - - - - - - 0.736 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
93. bcl2l10 ENSDARG00000026766 1426 1.639 - - - - - - 0.927 - 0.712 BCL2 like 10 [Source:ZFIN;Acc:ZDB-GENE-030825-2]
94. mtfr2 ENSDARG00000060394 482 1.638 - - - - - - 0.797 0.841 - mitochondrial fission regulator 2 [Source:ZFIN;Acc:ZDB-GENE-061013-398]
95. znf280d ENSDARG00000077013 1387 1.638 - - - - - - - 0.888 0.750 zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
96. nasp ENSDARG00000039208, ENSDARG00000114134 873 1.637 0.823 - - - - - 0.814 - - nuclear autoantigenic sperm protein (histone-binding) [Source:ZFIN;Acc:ZDB-GENE-030131-5511]
97. dnmbp ENSDARG00000074121 2711 1.634 - - - - - - 0.831 0.803 - dynamin binding protein [Source:ZFIN;Acc:ZDB-GENE-101026-2]
98. uck2a ENSDARG00000006074 1554 1.631 - - - - - - - 0.885 0.746 uridine-cytidine kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7158]
99. HIPK1_1 HIPK1_1 8096 1.627 - - - - - - 0.782 - 0.845
100. sae1 ENSDARG00000010487 2028 1.626 - - - - - - 0.713 0.913 - SUMO1 activating enzyme subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040625-21]

There are 2063 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA