Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sema3fa

Gene Name Gene ID Reads Annotation
sema3fa ENSDARG00000011163 759 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]










Genes with expression patterns similar to sema3fa

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sema3fa ENSDARG00000011163 759 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
2. trim36 ENSDARG00000062794 785 2.319 0.748 0.870 - - - 0.701 - - - tripartite motif containing 36 [Source:ZFIN;Acc:ZDB-GENE-040426-2936]
3. col16a1 ENSDARG00000009194 5600 1.898 - - 0.918 - 0.980 - - - - collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
4. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.826 - - 0.890 - 0.936 - - - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
5. RAB39B RAB39B 482 1.824 - - 0.997 - - 0.827 - - -
6. DENND4B ENSDARG00000102914 1001 1.807 - - - - 0.993 - 0.814 - - DENN/MADD domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-130530-684]
7. nrg1 ENSDARG00000104314 1081 1.789 - - 0.997 - - - 0.792 - - neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
8. rwdd3 ENSDARG00000057315 289 1.778 0.831 0.947 - - - - - - - RWD domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1723]
9. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.757 - - - - 0.976 0.781 - - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
10. lgi1a ENSDARG00000020493 1218 1.752 - - 0.995 - - 0.757 - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
11. utp6 ENSDARG00000098433, ENSDARG00000114878, ENSDARG00000116788 1262 1.75 - - 0.997 - - - 0.753 - - UTP6, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-769]
12. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 1.745 - - 0.983 - - 0.762 - - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
13. sardh ENSDARG00000058102, ENSDARG00000112110 2150 1.741 - - - - 0.978 - 0.763 - - sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
14. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 1.733 - - - - 0.997 - 0.736 - - ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
15. yy1a ENSDARG00000042796 4982 1.722 - 0.782 0.940 - - - - - - YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
16. mettl3 ENSDARG00000012827 728 1.722 - - 0.990 - - 0.732 - - - methyltransferase like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9498]
17. CABZ01073954.1 CABZ01073954.1 258 1.715 - - - - 0.999 0.716 - - -
18. CABZ01072607.1 ENSDARG00000113761 784 1.71 - - - 0.715 0.995 - - - - dynein cytoplasmic 2 heavy chain 1 [Source:NCBI gene;Acc:100332402]
19. foxi1 ENSDARG00000104566 176 1.709 0.854 0.855 - - - - - - - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
20. fam50a ENSDARG00000024895 3020 1.701 - - 0.976 - - - - 0.725 - family with sequence similarity 50, member A [Source:ZFIN;Acc:ZDB-GENE-050417-110]
21. trim24 ENSDARG00000103350 431 1.701 - - - - 0.998 - - 0.703 - tripartite motif containing 24 [Source:ZFIN;Acc:ZDB-GENE-030131-5913]
22. sgms1 ENSDARG00000029621 6376 1.701 - - 0.885 - 0.816 - - - - sphingomyelin synthase 1 [Source:ZFIN;Acc:ZDB-GENE-061103-295]
23. gdi1 ENSDARG00000056122 4106 1.694 - - 0.974 - - 0.720 - - - GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
24. si:ch211-125e6.8 ENSDARG00000094518 538 1.693 - - 0.985 - - - 0.708 - - si:ch211-125e6.8 [Source:ZFIN;Acc:ZDB-GENE-070912-42]
25. fam204a ENSDARG00000039699, ENSDARG00000114877 1178 1.69 - 0.863 - - - - 0.827 - - family with sequence similarity 204, member A [Source:ZFIN;Acc:ZDB-GENE-040718-271]
26. cpsf3 ENSDARG00000027649 6897 1.686 - - 0.787 - 0.899 - - - - cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
27. myrip ENSDARG00000038814 103 1.685 - 0.857 - - - 0.828 - - - myosin VIIA and Rab interacting protein [Source:ZFIN;Acc:ZDB-GENE-080123-1]
28. dek ENSDARG00000070108 2262 1.668 0.746 - 0.922 - - - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
29. vgll4b ENSDARG00000103730 5266 1.666 - - 0.716 - 0.950 - - - - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
30. manba ENSDARG00000008238 25 1.662 - 0.807 - - - 0.855 - - - mannosidase, beta A, lysosomal [Source:ZFIN;Acc:ZDB-GENE-040426-721]
31. dbx2 2971 1.659 - - 0.921 - - 0.738 - - - developing brain homeobox 2
32. znf574 ENSDARG00000087074 885 1.646 - 0.707 0.939 - - - - - - zinc finger protein 574 [Source:ZFIN;Acc:ZDB-GENE-100922-259]
33. tmem101 ENSDARG00000114508 494 1.634 0.818 - - - - - 0.816 - - transmembrane protein 101 [Source:ZFIN;Acc:ZDB-GENE-121214-289]
34. traip ENSDARG00000011262 410 1.631 - 0.847 - - - - 0.784 - - TRAF-interacting protein [Source:ZFIN;Acc:ZDB-GENE-040801-30]
35. im:7140055 ENSDARG00000092181 450 1.63 0.859 - - - - 0.771 - - - im:7140055 [Source:ZFIN;Acc:ZDB-GENE-041111-101]
36. rbm4.1 ENSDARG00000036386 625 1.629 - 0.812 - - - 0.817 - - - RNA binding motif protein 4.1 [Source:ZFIN;Acc:ZDB-GENE-030131-3902]
37. mtx3 ENSDARG00000090195 42 1.626 - 0.778 - - - - 0.848 - - metaxin 3 [Source:ZFIN;Acc:ZDB-GENE-021210-3]
38. MAN1B1 MAN1B1 47 1.619 - 0.870 - - - 0.749 - - -
39. rbm18 ENSDARG00000044255, ENSDARG00000111311 589 1.617 0.870 - - - - - - 0.747 - RNA binding motif protein 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1764]
40. si:ch211-74m13.3 ENSDARG00000076144 55 1.608 - 0.748 - - - - 0.860 - - si:ch211-74m13.3 [Source:ZFIN;Acc:ZDB-GENE-060503-219]
41. mtfr1 ENSDARG00000045304 277 1.598 - 0.774 - - - - 0.824 - - mitochondrial fission regulator 1 [Source:ZFIN;Acc:ZDB-GENE-041212-86]
42. znf704 ENSDARG00000061718, ENSDARG00000115892 160 1.597 - - - - - 0.758 0.839 - - zinc finger protein 704 [Source:ZFIN;Acc:ZDB-GENE-060503-775]
43. si:dkeyp-38g8.5 ENSDARG00000056954 506 1.588 - 0.839 - 0.749 - - - - - si:dkeyp-38g8.5 [Source:ZFIN;Acc:ZDB-GENE-081104-62]
44. cep72 ENSDARG00000105258 344 1.587 - - - - - - 0.813 0.774 - centrosomal protein 72 [Source:ZFIN;Acc:ZDB-GENE-101115-1]
45. acbd5a ENSDARG00000034883 300 1.581 0.749 0.832 - - - - - - - acyl-CoA binding domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-050522-268]
46. zgc:92630 ENSDARG00000004141, ENSDARG00000113420 147 1.578 - 0.860 - - - 0.718 - - - zgc:92630 [Source:ZFIN;Acc:ZDB-GENE-040718-449]
47. CCDC30 ENSDARG00000056961 178 1.57 0.866 0.704 - - - - - - - coiled-coil domain containing 30 [Source:ZFIN;Acc:ZDB-GENE-130530-667]
48. DCUN1D3 ENSDARG00000011493 319 1.568 - 0.815 - 0.753 - - - - - defective in cullin neddylation 1 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070928-2]
49. paip1 ENSDARG00000042892 902 1.55 - 0.758 - - - - 0.792 - - poly(A) binding protein interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-247]
50. ssbp4 ENSDARG00000056483 10196 1.549 - - - - 0.790 0.759 - - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
51. ADCK2 ENSDARG00000073923 129 1.543 - 0.802 - - - 0.741 - - - aarF domain containing kinase 2 [Source:ZFIN;Acc:ZDB-GENE-131121-369]
52. rwdd2b ENSDARG00000055426 294 1.54 - 0.741 - - - - 0.799 - - RWD domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-041001-119]
53. fam20c fam20c 603 1.538 0.831 - - - - - 0.707 - -
54. CABZ01070579.1 ENSDARG00000117759 1046 1.537 0.773 - - - - - 0.764 - -
55. smg8 ENSDARG00000061378 1164 1.527 0.820 - - 0.707 - - - - - SMG8 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-091204-279]
56. hoxb5b ENSDARG00000054030, ENSDARG00000113174 808 1.524 - 0.763 - - - 0.761 - - - homeobox B5b [Source:ZFIN;Acc:ZDB-GENE-000823-6]
57. trim8a ENSDARG00000090512 228 1.523 - 0.808 - - - - 0.715 - - tripartite motif containing 8a [Source:ZFIN;Acc:ZDB-GENE-130107-1]
58. ZNF337_4 ZNF337_4 409 1.512 - - - - - - 0.801 0.711 -
59. immp2l ENSDARG00000004925 215 1.506 - 0.804 - 0.702 - - - - - inner mitochondrial membrane peptidase subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040808-9]
60. tmem59l ENSDARG00000003655 1536 1.498 - 0.757 - - - 0.741 - - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
61. fam219ab ENSDARG00000013813 591 1.494 0.757 - - - - 0.737 - - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
62. snx18a ENSDARG00000067713, ENSDARG00000109647 765 1.488 0.771 - - - - - 0.717 - - sorting nexin 18a [Source:ZFIN;Acc:ZDB-GENE-070705-339]
63. CR788316.4 ENSDARG00000105829 297 1.488 - 0.778 - - - 0.710 - - - neoverrucotoxin subunit beta-like [Source:NCBI gene;Acc:100004951]
64. gpr37b ENSDARG00000033296 283 1.478 - - - - - 0.735 0.743 - - G protein-coupled receptor 37b [Source:ZFIN;Acc:ZDB-GENE-041210-264]
65. lztr1 ENSDARG00000015905, ENSDARG00000114621 632 1.467 - 0.702 - - - - 0.765 - - leucine-zipper-like transcription regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9564]
66. nck2a ENSDARG00000018206 231 1.467 - - - 0.730 - - - 0.737 - NCK adaptor protein 2a [Source:ZFIN;Acc:ZDB-GENE-040426-686]
67. uggt2 ENSDARG00000062089 661 1.459 - - - 0.734 - - - 0.725 - UDP-glucose glycoprotein glucosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050517-21]
68. GPALPP1 ENSDARG00000058287 1858 1.459 0.737 - - - - - 0.722 - - GPALPP motifs containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-212]
69. adoa ENSDARG00000042827 310 1.457 0.722 0.735 - - - - - - - 2-aminoethanethiol (cysteamine) dioxygenase a [Source:ZFIN;Acc:ZDB-GENE-041212-62]
70. si:dkey-48n15.2 si:dkey-48n15.2 297 1.456 0.739 0.717 - - - - - - -
71. timm8a ENSDARG00000023672, ENSDARG00000114203 1075 1.45 0.705 0.745 - - - - - - - translocase of inner mitochondrial membrane 8 homolog A (yeast) [Source:ZFIN;Acc:ZDB-GENE-040801-158]
72. pofut1 ENSDARG00000008953 1157 1.436 - 0.703 - - - - 0.733 - - protein O-fucosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040303-2]
73. ttll1 ENSDARG00000090778 114 1.436 - 0.721 - - - 0.715 - - - tubulin tyrosine ligase-like family, member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1326]
74. pop7 ENSDARG00000036394 1684 1.432 - 0.717 - - - 0.715 - - - POP7 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-041010-88]
75. hoxb2a ENSDARG00000000175 1122 1.421 - 0.713 - - - - 0.708 - - homeobox B2a [Source:ZFIN;Acc:ZDB-GENE-990415-103]
76. synm ENSDARG00000062350, ENSDARG00000113948, ENSDARG00000114029 483 0.999 - - - - 0.999 - - - - synemin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-050419-81]
77. bin2b ENSDARG00000010255 2649 0.999 - - - - 0.999 - - - - bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
78. slc46a1 ENSDARG00000026149 297 0.999 - - - - 0.999 - - - - solute carrier family 46 (folate transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1012]
79. kcnq5a ENSDARG00000069954 492 0.999 - - - - 0.999 - - - - potassium voltage-gated channel, KQT-like subfamily, member 5a [Source:ZFIN;Acc:ZDB-GENE-090312-185]
80. si:dkey-30k6.5 ENSDARG00000057238 617 0.999 - - - - 0.999 - - - - si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299]
81. si:dkey-70e17.2 si:dkey-70e17.2 371 0.999 - - - - 0.999 - - - -
82. pbx1a ENSDARG00000100494 854 0.999 - - - - 0.999 - - - - pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
83. lrp12 ENSDARG00000098845 999 0.999 - - 0.999 - - - - - - low density lipoprotein receptor-related protein 12 [Source:ZFIN;Acc:ZDB-GENE-060503-399]
84. si:dkey-114e9.1 si:dkey-114e9.1 233 0.999 - - - - 0.999 - - - -
85. tmem234 ENSDARG00000078333 488 0.999 - - - - 0.999 - - - - transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]
86. C3H16orf89 C3H16orf89 449 0.999 - - - - 0.999 - - - -
87. U1_25 U1_25 283 0.998 - - 0.998 - - - - - -
88. gata1b ENSDARG00000059130 151 0.998 - - 0.998 - - - - - - GATA binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-081104-43]
89. slc4a2b ENSDARG00000052330 1900 0.998 - - - - 0.998 - - - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
90. zgc:171673 ENSDARG00000102473 256 0.998 - - 0.998 - - - - - - zgc:171673 [Source:ZFIN;Acc:ZDB-GENE-071004-20]
91. mfsd4a mfsd4a 179 0.998 - - 0.998 - - - - - -
92. pkib ENSDARG00000053110 527 0.998 - - 0.998 - - - - - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
93. f2rl1.2 ENSDARG00000077540 822 0.998 - - 0.998 - - - - - - coagulation factor II (thrombin) receptor-like 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-070615-24]
94. pld1b ENSDARG00000057125 325 0.998 - - 0.998 - - - - - - phospholipase D1b [Source:ZFIN;Acc:ZDB-GENE-070510-3]
95. psmd10 ENSDARG00000015628, ENSDARG00000109675 983 0.998 - - 0.998 - - - - - - proteasome 26S subunit, non-ATPase 10 [Source:ZFIN;Acc:ZDB-GENE-050112-1]
96. nrg2a ENSDARG00000077818 854 0.998 - - - - 0.998 - - - - neuregulin 2a [Source:ZFIN;Acc:ZDB-GENE-070615-10]
97. errfi1 errfi1 979 0.998 - - - - 0.998 - - - -
98. vldlr ENSDARG00000006257 772 0.998 - - - - 0.998 - - - - very low density lipoprotein receptor [Source:ZFIN;Acc:ZDB-GENE-040426-803]
99. SNX19 SNX19 350 0.998 - - 0.998 - - - - - -
100. git2b ENSDARG00000042791, ENSDARG00000111846 1332 0.998 - - - - 0.998 - - - - G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]

There are 1804 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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