Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sdr42e1

Gene Name Gene ID Reads Annotation
sdr42e1 ENSDARG00000098838 25 short chain dehydrogenase/reductase family 42E, member 1 [Source:ZFIN;Acc:ZDB-GENE-051120-63]










Genes with expression patterns similar to sdr42e1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sdr42e1 ENSDARG00000098838 25 8 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 short chain dehydrogenase/reductase family 42E, member 1 [Source:ZFIN;Acc:ZDB-GENE-051120-63]
2. ripk2 ENSDARG00000104290 71 2.621 - - 0.880 - 0.782 0.959 - - - receptor-interacting serine-threonine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030902-3]
3. arl16 ENSDARG00000059498, ENSDARG00000110386 229 1.976 1.000 - - - - 0.976 - - - ADP-ribosylation factor-like 16 [Source:ZFIN;Acc:ZDB-GENE-070410-114]
4. iqsec3a ENSDARG00000099850, ENSDARG00000116182 12 1.949 1.000 - - - 0.949 - - - - IQ motif and Sec7 domain 3a [Source:ZFIN;Acc:ZDB-GENE-041210-343]
5. cnn1a ENSDARG00000017193 6 1.947 1.000 - - 0.947 - - - - - calponin 1, basic, smooth muscle, a [Source:ZFIN;Acc:ZDB-GENE-090312-141]
6. si:dkey-264b2.3 19 1.932 - - - - 0.969 0.963 - - - si:dkey-264b2.3, transcript variant X2
7. cacng8a ENSDARG00000020450 32 1.924 1.000 - - - - 0.924 - - - calcium channel, voltage-dependent, gamma subunit 8a [Source:ZFIN;Acc:ZDB-GENE-050417-239]
8. TMEM57 TMEM57 260 1.923 1.000 - - - - 0.923 - - -
9. si:dkey-15h19.3 si:dkey-15h19.3 5 1.916 - - - 0.947 0.969 - - - -
10. sult1st6 ENSDARG00000006811 31 1.873 - 0.904 - - 0.969 - - - - sulfotransferase family 1, cytosolic sulfotransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040718-343]
11. SNORA57 SNORA57 148 1.848 - 0.856 - - - 0.992 - - -
12. C8H1orf194 C8H1orf194 111 1.836 - 0.898 - - - 0.938 - - -
13. slc25a37 ENSDARG00000073743 31 1.827 1.000 - - - - - - - 0.827 solute carrier family 25 (mitochondrial iron transporter), member 37 [Source:ZFIN;Acc:ZDB-GENE-031118-202]
14. dnajb4 ENSDARG00000038978 56 1.824 1.000 - - - 0.824 - - - - DnaJ (Hsp40) homolog, subfamily B, member 4 [Source:ZFIN;Acc:ZDB-GENE-040801-192]
15. lingo3a ENSDARG00000061970 234 1.821 1.000 - - - - 0.821 - - - leucine rich repeat and Ig domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-54]
16. mxc ENSDARG00000024789 68 1.819 1.000 0.819 - - - - - - - myxovirus (influenza virus) resistance C [Source:ZFIN;Acc:ZDB-GENE-030721-7]
17. rag2 ENSDARG00000052121 15 1.817 1.000 0.817 - - - - - - - recombination activating gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-235]
18. pdia2 ENSDARG00000018263 74 1.812 1.000 - - - - - - - 0.812 protein disulfide isomerase family A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-705]
19. zfpm2a ENSDARG00000040123 46 1.801 1.000 - 0.801 - - - - - - zinc finger protein, FOG family member 2a [Source:ZFIN;Acc:ZDB-GENE-060130-4]
20. pld3 ENSDARG00000068199 205 1.801 - 0.833 - - - 0.968 - - - phospholipase D family, member 3 [Source:ZFIN;Acc:ZDB-GENE-050419-212]
21. CU013533.1 CU013533.1 108 1.792 - 0.861 - - - 0.931 - - -
22. si:ch211-133l11.10 ENSDARG00000005626 381 1.791 0.849 - - - - 0.942 - - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
23. IGFN1_1 IGFN1_1 29 1.784 - - 0.930 - - 0.854 - - -
24. si:dkey-45d16.4 72 1.783 - 0.819 - - - 0.964 - - - si:dkey-45d16.4
25. ksr2 ENSDARG00000094526 134 1.77 0.819 - - - - 0.951 - - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
26. RAC1_2 RAC1_2 51 1.77 0.775 - - - - 0.995 - - -
27. si:ch211-241e1.5 ENSDARG00000008906 70 1.769 - - 0.948 - - 0.821 - - - si:ch211-241e1.5 [Source:ZFIN;Acc:ZDB-GENE-030131-6298]
28. BX324198.1 BX324198.1 12 1.762 - - - - - 0.991 - - 0.771
29. syt13 ENSDARG00000012306 298 1.758 - 0.794 - - - 0.964 - - - synaptotagmin XIII [Source:ZFIN;Acc:ZDB-GENE-050417-135]
30. SMARCA4 ENSDARG00000104339 48 1.752 - - 0.949 - 0.803 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
31. smpd5 ENSDARG00000059811, ENSDARG00000117140 60 1.748 - 0.755 - - - 0.993 - - - sphingomyelin phosphodiesterase 5 [Source:ZFIN;Acc:ZDB-GENE-061110-22]
32. dpp6b ENSDARG00000024744 234 1.732 - 0.810 - - - 0.922 - - - dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
33. BX511270.1 BX511270.1 25 1.731 - 1.000 - - - - - - 0.731
34. ggcta ENSDARG00000076406 33 1.731 1.000 - - - - - - - 0.731 gamma-glutamylcyclotransferase a [Source:ZFIN;Acc:ZDB-GENE-081104-129]
35. CT030712.1 ENSDARG00000044355 83 1.725 - 0.734 - - - 0.991 - - - uncharacterized LOC100534830 [Source:NCBI gene;Acc:100534830]
36. ARID5B ENSDARG00000037196 165 1.715 - 0.819 - - - 0.896 - - - AT-rich interaction domain 5B [Source:ZFIN;Acc:ZDB-GENE-121214-272]
37. rad54b ENSDARG00000092134 231 1.708 - 0.799 - - - 0.909 - - - RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]
38. si:ch211-244b2.4 ENSDARG00000045530 32 1.706 1.000 - - 0.706 - - - - - si:ch211-244b2.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8699]
39. fam110b ENSDARG00000088073 420 1.69 - 0.938 - - - 0.752 - - - family with sequence similarity 110, member B [Source:ZFIN;Acc:ZDB-GENE-050626-70]
40. thsd7ba ENSDARG00000095022 231 1.659 - - 0.783 - - 0.876 - - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
41. LRFN2 118 1.65 0.775 - - - - 0.875 - - - leucine rich repeat and fibronectin type III domain containing 2
42. dcdc2b ENSDARG00000053744 181 1.647 0.747 - - - - 0.900 - - - doublecortin domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-051113-124]
43. hecw1 hecw1 241 1.643 - 0.717 - - - 0.926 - - -
44. bcr ENSDARG00000079286 578 1.639 0.768 - - - - 0.871 - - - breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
45. fndc1 ENSDARG00000002847 178 1.625 0.862 - 0.763 - - - - - - fibronectin type III domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041210-332]
46. mppe1 ENSDARG00000045416 340 1.613 - 0.806 - - - 0.807 - - - metallophosphoesterase 1 [Source:ZFIN;Acc:ZDB-GENE-050417-195]
47. gtf3c3 ENSDARG00000043247 202 1.605 - 0.762 - - - 0.843 - - - general transcription factor IIIC, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-040914-80]
48. HIVEP2 HIVEP2 87 1.602 - 0.790 - - - 0.812 - - -
49. si:dkey-54f18.2 si:dkey-54f18.2 27 1.579 - 0.819 - - - - - - 0.760
50. si:dkey-147f3.4 ENSDARG00000071029, ENSDARG00000092077 36 1.577 0.758 0.819 - - - - - - - si:dkey-147f3.4 [Source:ZFIN;Acc:ZDB-GENE-061009-29]
51. si:dkey-4c15.12 ENSDARG00000095350 119 1.575 - 0.860 0.715 - - - - - - si:dkey-4c15.12 [Source:ZFIN;Acc:ZDB-GENE-050420-351]
52. coq4 ENSDARG00000104733 402 1.574 - 0.739 - - - 0.835 - - - coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
53. CT030012.1 ENSDARG00000105611 154 1.574 0.758 - - - - 0.816 - - -
54. mpg ENSDARG00000069729 43 1.568 0.749 0.819 - - - - - - - N-methylpurine DNA glycosylase [Source:ZFIN;Acc:ZDB-GENE-070410-121]
55. PKD1 PKD1 260 1.56 - 0.799 - - - 0.761 - - -
56. kiaa1549la ENSDARG00000062477 143 1.55 0.823 0.727 - - - - - - - KIAA1549-like a [Source:ZFIN;Acc:ZDB-GENE-061207-55]
57. CELF6 ENSDARG00000101933 228 1.545 - 0.712 - - - 0.833 - - - CUGBP Elav-like family member 6 [Source:HGNC Symbol;Acc:HGNC:14059]
58. kcnn1b ENSDARG00000023546 152 1.54 0.728 - - - - 0.812 - - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1b [Source:ZFIN;Acc:ZDB-GENE-060503-397]
59. dazap1 ENSDARG00000070846, ENSDARG00000114578 525 1.533 - - - - 0.726 0.807 - - - DAZ associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070212-1]
60. lpcat1 ENSDARG00000011506 263 1.531 - 0.750 - - - 0.781 - - - lysophosphatidylcholine acyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060503-915]
61. shisa7 shisa7 181 1.515 0.783 - - - - 0.732 - - -
62. deptor ENSDARG00000040930 191 1.511 0.715 - - - - 0.796 - - - DEP domain containing MTOR-interacting protein [Source:ZFIN;Acc:ZDB-GENE-061013-453]
63. ttc9b ENSDARG00000068421 251 1.488 0.771 - - - - 0.717 - - - tetratricopeptide repeat domain 9B [Source:ZFIN;Acc:ZDB-GENE-050419-67]
64. rpph1 33 1.465 - - 0.733 0.732 - - - - - ribonuclease P RNA component H1
65. popdc3 ENSDARG00000058551 538 1.461 - 0.713 - - - 0.748 - - - popeye domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040624-10]
66. CU571310.1 ENSDARG00000102580 53 1.406 - 0.703 0.703 - - - - - - ras-related protein Rab-39A-like [Source:NCBI gene;Acc:100330257]
67. CCDC74B CCDC74B 8 1 1.000 - - - - - - - -
68. PCBP3 ENSDARG00000054378 17 1 1.000 - - - - - - - - poly(rC) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-157]
69. BEND2_1 BEND2_1 45 1 1.000 - - - - - - - -
70. scpp5 ENSDARG00000078622 15 1 - - - - - 1.000 - - - secretory calcium-binding phosphoprotein 5 [Source:ZFIN;Acc:ZDB-GENE-090313-256]
71. si:ch211-238e22.2 ENSDARG00000112450 23 1 1.000 - - - - - - - - si:ch211-238e22.2 [Source:ZFIN;Acc:ZDB-GENE-041210-346]
72. AL645691.4 AL645691.4 0 1 1.000 - - - - - - - -
73. si:ch211-268b13.3 si:ch211-268b13.3 28 1 1.000 - - - - - - - -
74. FANCA ENSDARG00000098241 39 1 1.000 - - - - - - - - FA complementation group A [Source:ZFIN;Acc:ZDB-GENE-060508-1]
75. slc35a5 ENSDARG00000000001 17 1 - - - - - 1.000 - - - solute carrier family 35, member A5 [Source:ZFIN;Acc:ZDB-GENE-030616-55]
76. megf11 ENSDARG00000062686 230 1 1.000 - - - - - - - - multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
77. slc44a5a ENSDARG00000017398 5 1 1.000 - - - - - - - - solute carrier family 44, member 5a [Source:ZFIN;Acc:ZDB-GENE-070705-333]
78. ACTN4_2 ACTN4_2 1 1 1.000 - - - - - - - -
79. PFKFB1 ENSDARG00000037140 5 1 - - - - - 1.000 - - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5664]
80. LRRC71 LRRC71 11 1 1.000 - - - - - - - -
81. BX664721.1 ENSDARG00000051804 21 1 1.000 - - - - - - - -
82. rx3 ENSDARG00000052893 43 1 1.000 - - - - - - - - retinal homeobox gene 3 [Source:ZFIN;Acc:ZDB-GENE-990415-238]
83. sox11a ENSDARG00000077811 25 1 1.000 - - - - - - - - SRY (sex determining region Y)-box 11a [Source:ZFIN;Acc:ZDB-GENE-980526-395]
84. ppm1f ENSDARG00000005786, ENSDARG00000109839 25 1 - - - - - 1.000 - - - protein phosphatase, Mg2+/Mn2+ dependent, 1F [Source:ZFIN;Acc:ZDB-GENE-051128-2]
85. U1_32 U1_32 2 1 1.000 - - - - - - - -
86. si:dkey-35m8.1 ENSDARG00000094587 0 1 1.000 - - - - - - - - si:dkey-35m8.1 [Source:ZFIN;Acc:ZDB-GENE-060526-296]
87. KLHDC8A ENSDARG00000061000 13 1 1.000 - - - - - - - - kelch domain containing 8A [Source:ZFIN;Acc:ZDB-GENE-120810-3]
88. pcdh2g6 9 1 - - - - - 1.000 - - - protocadherin 2 gamma 6
89. lppr2a lppr2a 19 1 1.000 - - - - - - - -
90. znf652 ENSDARG00000062302 17 1 1.000 - - - - - - - - zinc finger protein 652 [Source:ZFIN;Acc:ZDB-GENE-030131-5857]
91. si:dkey-188p4.1 si:dkey-188p4.1 1 1 1.000 - - - - - - - -
92. si:dkey-57a22.12 si:dkey-57a22.12 23 1 1.000 - - - - - - - -
93. celsr2l celsr2l 1 1 1.000 - - - - - - - -
94. CABZ01087549.1 CABZ01087549.1 108 1 1.000 - - - - - - - -
95. CABZ01078431.1 CABZ01078431.1 183 1 1.000 - - - - - - - -
96. foxb1b ENSDARG00000053650, ENSDARG00000110408, ENSDARG00000113373 51 1 1.000 - - - - - - - - forkhead box B1b [Source:ZFIN;Acc:ZDB-GENE-990415-77]
97. zfyve19 ENSDARG00000003642 12 1 1.000 - - - - - - - - zinc finger, FYVE domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-040718-109]
98. si:dkey-148a12.2 si:dkey-148a12.2 1 1 1.000 - - - - - - - -
99. si:ch211-26b3.4 ENSDARG00000075491 50 1 1.000 - - - - - - - - si:ch211-26b3.4 [Source:ZFIN;Acc:ZDB-GENE-081104-60]
100. zswim7 ENSDARG00000067608 179 1 1.000 - - - - - - - - zinc finger, SWIM-type containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-4255]

There are 1723 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA