Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sdc4

Gene Name Gene ID Reads Annotation
sdc4 ENSDARG00000059906 10105 syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]










Genes with expression patterns similar to sdc4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sdc4 ENSDARG00000059906 10105 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
2. rcc2 ENSDARG00000011510, ENSDARG00000115981 7997 2.607 - 0.789 - - 0.856 0.962 - - - regulator of chromosome condensation 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2213]
3. setd8a 2549 2.569 - - 0.889 - 0.902 - 0.778 - - SET domain containing (lysine methyltransferase) 8a
4. si:ch211-161h7.4 ENSDARG00000087238 4399 2.532 - 0.783 0.878 - 0.871 - - - - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
5. hgs ENSDARG00000020960 3574 2.53 - 0.864 - - 0.888 - 0.778 - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:ZFIN;Acc:ZDB-GENE-030131-6107]
6. GABARAP GABARAP 8341 2.497 - 0.844 - - 0.814 - 0.839 - -
7. lypla2 ENSDARG00000053656 8971 2.484 - 0.799 0.882 - - - 0.803 - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
8. ube2h ENSDARG00000000019 9900 2.477 - - - - - 0.952 0.793 - 0.732 ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030616-67]
9. hnrnpk ENSDARG00000018914 8841 2.457 - - 0.909 - - - 0.808 - 0.740 heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
10. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 2.453 - 0.800 0.934 - - - 0.719 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
11. CPEB4 CPEB4 3249 2.442 - - 0.854 - 0.865 - 0.723 - -
12. nup188 ENSDARG00000030022 2398 2.434 - 0.880 - - - - 0.806 - 0.748 nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
13. pbx2 ENSDARG00000019717 6892 2.42 - - 0.806 - 0.873 - 0.741 - - pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
14. mccc2 ENSDARG00000017571 5635 2.398 - - 0.879 - - 0.727 - - 0.792 methylcrotonoyl-CoA carboxylase 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040426-2493]
15. boc ENSDARG00000074335 4832 2.394 - - - - - 0.841 0.849 - 0.704 BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
16. cyfip1 ENSDARG00000044345 5483 2.385 - 0.817 0.867 - - - - - 0.701 cytoplasmic FMR1 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8557]
17. lmnb1 ENSDARG00000044299 9817 2.384 - - 0.819 - 0.758 - 0.807 - - lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
18. hist2h2l ENSDARG00000068996, ENSDARG00000112150 10411 2.376 - 0.775 0.804 - - - 0.797 - - histone 2, H2, like [Source:ZFIN;Acc:ZDB-GENE-031118-36]
19. sp4 ENSDARG00000005186 2904 2.359 - 0.860 - - 0.767 - 0.732 - - sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
20. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 2.357 - 0.773 - - 0.833 - 0.751 - - ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
21. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 2.355 - 0.712 0.879 - - - 0.764 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
22. C10H11orf30 C10H11orf30 1982 2.354 - 0.736 0.896 - - - 0.722 - -
23. nap1l4b ENSDARG00000068868 3285 2.351 - - 0.886 - - - - 0.701 0.764 nucleosome assembly protein 1-like 4b [Source:ZFIN;Acc:ZDB-GENE-041114-168]
24. tia1l ENSDARG00000026476, ENSDARG00000109827 9378 2.351 - 0.781 0.757 - 0.813 - - - - cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]
25. ctnna1 ENSDARG00000102441 7984 2.339 - 0.828 0.807 - - - 0.704 - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
26. exosc1 ENSDARG00000059841 6895 2.335 - 0.868 - - - - 0.716 - 0.751 exosome component 1 [Source:ZFIN;Acc:ZDB-GENE-080926-3]
27. dut ENSDARG00000106529 3120 2.331 - 0.708 0.916 - - - 0.707 - - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
28. kpna3 ENSDARG00000052641 5347 2.31 - 0.804 - - - - 0.742 - 0.764 karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
29. mfap2 ENSDARG00000059367 3774 2.306 - 0.755 - - 0.849 - 0.702 - - microfibril associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6710]
30. agpat4 ENSDARG00000069044 4487 2.303 - 0.838 - - 0.761 - 0.704 - - 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) [Source:ZFIN;Acc:ZDB-GENE-040426-1924]
31. foxo3b ENSDARG00000042904 5046 2.299 - 0.779 - - 0.815 - 0.705 - - forkhead box O3b [Source:ZFIN;Acc:ZDB-GENE-990708-6]
32. ppap2b ppap2b 2900 2.173 - 0.760 - 0.701 - - 0.712 - -
33. thbs1b ENSDARG00000010785 3095 1.828 - - 0.876 - - 0.952 - - - thrombospondin 1b [Source:ZFIN;Acc:ZDB-GENE-020708-1]
34. hspg2 ENSDARG00000076564 3440 1.823 - - - - 0.857 0.966 - - - heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4]
35. MDC1 ENSDARG00000086764 1851 1.801 - - 0.895 - 0.906 - - - - mediator of DNA damage checkpoint 1 [Source:ZFIN;Acc:ZDB-GENE-060810-185]
36. prdx2 ENSDARG00000025350 11194 1.791 - - 0.827 - - 0.964 - - - peroxiredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-030326-2]
37. WDR83OS ENSDARG00000025554 7117 1.781 - - - - 0.807 0.974 - - - WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
38. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.761 - 0.849 0.912 - - - - - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
39. axin2 ENSDARG00000100149 4223 1.749 - 0.832 0.917 - - - - - - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
40. poc1bl ENSDARG00000012745 2451 1.743 - - 0.868 - 0.875 - - - - POC1 centriolar protein homolog B (Chlamydomonas), like [Source:ZFIN;Acc:ZDB-GENE-050306-41]
41. alg5 ENSDARG00000021938, ENSDARG00000061235 2279 1.739 - - 0.855 - 0.884 - - - - asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-030131-6586]
42. eya3 ENSDARG00000036100 1965 1.737 - - 0.858 - 0.879 - - - - EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
43. bckdk ENSDARG00000016904 3775 1.727 - 0.848 - - - - 0.879 - - branched chain ketoacid dehydrogenase kinase [Source:ZFIN;Acc:ZDB-GENE-021204-1]
44. luc7l ENSDARG00000055903 3357 1.725 - - 0.901 - - - 0.824 - - LUC7-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-111]
45. srsf1a ENSDARG00000057691, ENSDARG00000111226 15525 1.725 - - - - 0.761 0.964 - - - serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
46. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.723 - - 0.838 - 0.885 - - - - pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
47. anxa4 ENSDARG00000036456 3332 1.722 - 0.846 - - 0.876 - - - - annexin A4 [Source:ZFIN;Acc:ZDB-GENE-030707-1]
48. zfand5b ENSDARG00000002271 4145 1.72 - 0.854 - - 0.866 - - - - zinc finger, AN1-type domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-875]
49. ube2i ube2i 13024 1.716 - - - - - 0.957 0.759 - -
50. srrm2 ENSDARG00000037965 1967 1.714 - 0.795 0.919 - - - - - - serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
51. hsdl2 ENSDARG00000002523 2746 1.714 - 0.762 - - - 0.952 - - - hydroxysteroid dehydrogenase like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1066]
52. cenpf ENSDARG00000055133 5267 1.71 - 0.741 - - - 0.969 - - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
53. srrm1 ENSDARG00000001244 4972 1.707 - 0.901 - - - - 0.806 - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
54. golga7 ENSDARG00000057676 4691 1.706 - - - - 0.877 - 0.829 - - golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
55. cltca ENSDARG00000043493, ENSDARG00000115370 12561 1.705 - - 0.871 - - - 0.834 - - clathrin, heavy chain a (Hc) [Source:ZFIN;Acc:ZDB-GENE-030131-2299]
56. eif3c ENSDARG00000016443 18003 1.703 - - 0.750 - - 0.953 - - - eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
57. snrpb ENSDARG00000011125 11729 1.701 - - 0.794 - 0.907 - - - - small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
58. cand1 ENSDARG00000017841 8164 1.701 - 0.818 0.883 - - - - - - cullin-associated and neddylation-dissociated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2872]
59. tmem176l.1 ENSDARG00000099491 860 1.7 - 0.810 - - 0.890 - - - - transmembrane protein 176l.1 [Source:ZFIN;Acc:ZDB-GENE-080829-11]
60. arf4a ENSDARG00000045989, ENSDARG00000103858 2545 1.7 - - - - - 0.958 0.742 - - ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
61. ptenb ENSDARG00000056623 5783 1.697 - 0.864 - - - - 0.833 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
62. snx12 ENSDARG00000019060 9563 1.696 - - 0.915 - - - 0.781 - - sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]
63. crkl ENSDARG00000028699 2966 1.695 - - 0.889 - - - 0.806 - - v-crk avian sarcoma virus CT10 oncogene homolog-like [Source:ZFIN;Acc:ZDB-GENE-040426-2951]
64. ppp1cab ENSDARG00000071566 4350 1.695 - - - - - 0.963 0.732 - - protein phosphatase 1, catalytic subunit, alpha isozyme b [Source:ZFIN;Acc:ZDB-GENE-030131-5512]
65. zfr ENSDARG00000027109, ENSDARG00000116459 4171 1.695 - 0.732 - - - 0.963 - - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
66. BRK1 ENSDARG00000041974 6430 1.693 - - 0.897 - - - - - 0.796 BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:ZFIN;Acc:ZDB-GENE-040625-77]
67. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 1.692 - - - - - 0.959 - 0.733 - cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
68. pum1 ENSDARG00000099256 5017 1.691 - - 0.908 - - - 0.783 - - pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
69. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.687 - - - - 0.920 - 0.767 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
70. rca2.1 ENSDARG00000056075 3410 1.685 - - - - - 0.969 0.716 - - regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
71. rbm39b ENSDARG00000041853 1421 1.684 - 0.797 0.887 - - - - - - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
72. ilk ENSDARG00000056964 6686 1.684 - 0.842 - - - - 0.842 - - integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]
73. csrp2 ENSDARG00000011961 1003 1.68 - 0.724 - - - 0.956 - - - cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863]
74. eif2s3 ENSDARG00000008292 17051 1.68 - 0.819 - - 0.861 - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
75. zfp36l1b ENSDARG00000021443 2974 1.679 - - - - - 0.961 0.718 - - zinc finger protein 36, C3H type-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2391]
76. fbl ENSDARG00000053912 5891 1.678 - - 0.890 - 0.788 - - - - fibrillarin [Source:ZFIN;Acc:ZDB-GENE-040426-1936]
77. hoxc11a ENSDARG00000070351 1783 1.676 - - - - - 0.958 0.718 - - homeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]
78. ptpn1 ENSDARG00000007923 3647 1.674 - - 0.892 - - - 0.782 - - protein tyrosine phosphatase, non-receptor type 1 [Source:ZFIN;Acc:ZDB-GENE-980605-23]
79. ppp2r2d ENSDARG00000102009 5710 1.672 - - 0.856 - - - 0.816 - - protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
80. fam46ba 4575 1.669 - 0.706 - - - 0.963 - - - family with sequence similarity 46, member Ba
81. nup98 ENSDARG00000074955 3998 1.667 - 0.748 - - 0.919 - - - - nucleoporin 98 [Source:ZFIN;Acc:ZDB-GENE-040426-1180]
82. esrrb ENSDARG00000100847 636 1.667 - 0.779 - - 0.888 - - - - estrogen-related receptor beta [Source:ZFIN;Acc:ZDB-GENE-040616-2]
83. arpp19a ENSDARG00000032532, ENSDARG00000109679 5102 1.666 - 0.807 - - - - 0.859 - - cAMP-regulated phosphoprotein 19a [Source:ZFIN;Acc:ZDB-GENE-040426-1281]
84. rac1 rac1 7341 1.662 - 0.876 - - - - 0.786 - -
85. ttk ENSDARG00000041361 3911 1.661 - - 0.856 - - - 0.805 - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
86. ENSDARG00000086666 ENSDARG00000086666 2159 1.659 - 0.807 0.852 - - - - - -
87. USMG5 USMG5 10356 1.658 - - - - - 0.933 0.725 - -
88. mbd1 mbd1 1309 1.658 - 0.764 - - 0.894 - - - -
89. ube4b ENSDARG00000037017 8012 1.657 - - 0.901 - - - 0.756 - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
90. cars ENSDARG00000036164 2019 1.655 - 0.773 0.882 - - - - - - cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
91. cnn3b ENSDARG00000029856 4807 1.654 - - - - 0.927 - 0.727 - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
92. arpc4l ENSDARG00000058225 10107 1.652 - 0.787 - - - - - - 0.865 actin related protein 2/3 complex, subunit 4, like [Source:ZFIN;Acc:ZDB-GENE-040808-18]
93. flot2a ENSDARG00000004830 5276 1.65 - - - - 0.873 - 0.777 - - flotillin 2a [Source:ZFIN;Acc:ZDB-GENE-020430-3]
94. ubl3b ENSDARG00000021556 1210 1.648 - 0.781 0.867 - - - - - - ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
95. fat1 fat1 3934 1.647 - 0.770 0.877 - - - - - -
96. SERBP1 SERBP1 9276 1.641 - - 0.895 - - - 0.746 - -
97. wu:fj05h12 wu:fj05h12 6166 1.639 - 0.796 - - 0.843 - - - -
98. CASKIN2_1 CASKIN2_1 2299 1.638 - 0.734 - - 0.904 - - - -
99. slc39a13 ENSDARG00000000442 1367 1.638 - 0.743 - - 0.895 - - - - solute carrier family 39 (zinc transporter), member 13 [Source:ZFIN;Acc:ZDB-GENE-030616-17]
100. kdm5c ENSDARG00000006124 4389 1.638 - - 0.877 - - - 0.761 - - lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]

There are 1810 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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