Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sdc3

Gene Name Gene ID Reads Annotation
sdc3 3788 syndecan 3










Genes with expression patterns similar to sdc3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sdc3 3788 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 syndecan 3
2. brd3b ENSDARG00000100129 6387 2.366 - - - - - 0.832 0.791 - 0.743 bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
3. hmgb2b ENSDARG00000053990 11519 2.326 0.764 0.721 - - - - 0.841 - - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
4. top2b ENSDARG00000034195 3715 2.25 0.746 - 0.764 - - - - - 0.740 DNA topoisomerase II beta [Source:ZFIN;Acc:ZDB-GENE-041008-136]
5. khsrp ENSDARG00000026489 15738 2.218 0.705 - - - - - 0.756 - 0.757 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
6. SSBP4 ENSDARG00000056483 5156 2.172 0.716 - 0.750 - - - 0.706 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
7. FP085405.1 FP085405.1 5189 1.64 - - - - - - 0.811 0.829 -
8. map4k3a ENSDARG00000087742 771 1.636 - 0.766 - - - 0.870 - - - mitogen-activated protein kinase kinase kinase kinase 3a [Source:ZFIN;Acc:ZDB-GENE-130329-1]
9. fam219aa ENSDARG00000016396 1788 1.593 - - - - - 0.821 0.772 - - family with sequence similarity 219, member Aa [Source:ZFIN;Acc:ZDB-GENE-040801-110]
10. ruvbl1 ENSDARG00000002591 2381 1.592 - 0.815 - - - - - - 0.777 RuvB-like AAA ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-030109-2]
11. EPB41L1 EPB41L1 1896 1.589 0.735 - - - - - - - 0.854
12. nckap1 ENSDARG00000060853 3540 1.589 - - - - - 0.789 - - 0.800 NCK-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4426]
13. nsun2 ENSDARG00000056665 740 1.586 - 0.880 - - - 0.706 - - - NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
14. nop56 ENSDARG00000012820 15231 1.585 - 0.724 - - - - - - 0.861 NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
15. rbb4 rbb4 15541 1.574 - - 0.726 - - - 0.848 - -
16. WDR77 2463 1.57 - 0.834 - - - - 0.736 - - WD repeat domain 77
17. hmmr ENSDARG00000021794, ENSDARG00000111088 2009 1.57 - - - - - - 0.822 - 0.748 hyaluronan-mediated motility receptor (RHAMM) [Source:ZFIN;Acc:ZDB-GENE-030131-731]
18. CYYR1 ENSDARG00000103783 4107 1.555 - - - - - - 0.721 - 0.834 cysteine/tyrosine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2356]
19. mlf2 ENSDARG00000034616, ENSDARG00000110660 14039 1.55 - - - - - - 0.812 0.738 - myeloid leukemia factor 2 [Source:ZFIN;Acc:ZDB-GENE-050913-67]
20. ckbb ENSDARG00000043257 3503 1.538 - - - - - - 0.701 - 0.837 creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
21. ppp2r5eb ENSDARG00000069118 1902 1.534 - 0.820 - - - - - - 0.714 protein phosphatase 2, regulatory subunit B', epsilon isoform b [Source:ZFIN;Acc:ZDB-GENE-030904-6]
22. cct5 ENSDARG00000045399 11572 1.533 - 0.736 - - - - - - 0.797 chaperonin containing TCP1, subunit 5 (epsilon) [Source:ZFIN;Acc:ZDB-GENE-030131-977]
23. ppp1cc 2361 1.525 - - - - - 0.789 0.736 - - protein phosphatase 1, catalytic subunit, gamma isozyme
24. prpf38b ENSDARG00000053101 1785 1.523 - 0.809 - - - - 0.714 - - pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]
25. ube2i2 ube2i2 4828 1.516 - - - - - - 0.737 - 0.779
26. setb ENSDARG00000003920 21788 1.515 - - - - - 0.788 0.727 - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
27. rab5if ENSDARG00000074790 8807 1.511 - 0.811 - - - - - - 0.700 RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
28. psma6a ENSDARG00000019398 2702 1.509 - - - - - 0.788 0.721 - - proteasome subunit alpha 6a [Source:ZFIN;Acc:ZDB-GENE-020326-1]
29. pa2g4b ENSDARG00000070657 7999 1.509 - 0.744 - - - - 0.765 - - proliferation-associated 2G4, b [Source:ZFIN;Acc:ZDB-GENE-030131-2182]
30. zfr ENSDARG00000027109, ENSDARG00000116459 4171 1.507 - 0.785 - - - - 0.722 - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
31. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 1.504 - - - 0.747 - - 0.757 - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
32. AL929222.1 ENSDARG00000096994 1293 1.502 - - - - - 0.790 - - 0.712
33. dab2ipa ENSDARG00000069484 1138 1.5 - - 0.754 - - - 0.746 - - DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
34. TNRC6A ENSDARG00000079688 14433 1.495 - - - - - 0.734 0.761 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
35. cbx5 ENSDARG00000061187 24026 1.493 - - - - - - 0.713 0.780 - chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
36. ipo7 ENSDARG00000035751 7095 1.493 - 0.741 - - - - 0.752 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
37. nucks1b ENSDARG00000012777 4468 1.493 - - - - - - 0.760 - 0.733 nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
38. psat1 ENSDARG00000016733 8084 1.492 - - - - - 0.709 0.783 - - phosphoserine aminotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5723]
39. kmt2cb ENSDARG00000075560 4816 1.491 - 0.788 - - - - 0.703 - - lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
40. nucks1a ENSDARG00000078473 28285 1.491 - 0.736 0.755 - - - - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
41. PAPD5 2090 1.489 - 0.714 - - - 0.775 - - - PAP associated domain containing 5, transcript variant X1
42. wu:fb54a03 wu:fb54a03 1722 1.485 - - - - - 0.722 - - 0.763
43. usp7 ENSDARG00000073710 7017 1.483 - - 0.729 - - - 0.754 - - ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
44. si:ch211-288g17.3 ENSDARG00000070959 2425 1.482 0.731 - 0.751 - - - - - - si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
45. arid4a ENSDARG00000043873 4176 1.481 - - - - - 0.706 0.775 - - AT rich interactive domain 4A (RBP1-like) [Source:ZFIN;Acc:ZDB-GENE-050809-105]
46. paip2b ENSDARG00000008706 4255 1.481 - 0.710 - - - 0.771 - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
47. GABARAP GABARAP 8341 1.48 - - - - - - 0.762 - 0.718
48. prmt1 ENSDARG00000010246 11311 1.478 - 0.751 - - - - 0.727 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
49. smg7 ENSDARG00000060767 2759 1.477 - 0.710 - - - - 0.767 - - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
50. hnrnpub ENSDARG00000004735 16496 1.475 0.714 - - - - - 0.761 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
51. aspm ENSDARG00000103754 5708 1.473 - - 0.739 - - - 0.734 - - abnormal spindle microtubule assembly [Source:ZFIN;Acc:ZDB-GENE-050208-620]
52. FOXK2 ENSDARG00000030583 5500 1.469 - - - - - 0.758 0.711 - - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
53. ybx1 ENSDARG00000004757 916 1.469 - 0.763 - - - - 0.706 - - Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3]
54. cdk2 ENSDARG00000026577 2835 1.468 - - - - - 0.734 0.734 - - cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
55. foxp4 ENSDARG00000076120 9458 1.468 - 0.705 0.763 - - - - - - forkhead box P4 [Source:ZFIN;Acc:ZDB-GENE-101207-1]
56. map3k7 ENSDARG00000020469 2845 1.465 - - - - - - 0.719 - 0.746 mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
57. cdc20 ENSDARG00000100741 3264 1.463 - - - - - - 0.705 - 0.758 cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
58. cltcb ENSDARG00000090716 5544 1.462 - - - - - 0.704 - - 0.758 clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
59. qars ENSDARG00000010316 2715 1.46 - 0.759 - - - - - - 0.701 glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
60. ddx39ab ENSDARG00000015111 11619 1.459 - - - - - 0.748 0.711 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
61. dnajc8 ENSDARG00000059373 1858 1.453 - 0.712 - - - 0.741 - - - DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:ZFIN;Acc:ZDB-GENE-030131-66]
62. Sep-06 Sep-06 5465 1.45 - 0.720 - - - - 0.730 - -
63. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 1.449 - - - - - - 0.727 - 0.722 chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
64. cnot3a ENSDARG00000007135 3084 1.443 - 0.711 - - - 0.732 - - - CCR4-NOT transcription complex, subunit 3a [Source:ZFIN;Acc:ZDB-GENE-040927-6]
65. prkcbp1l ENSDARG00000011932 2714 1.443 - 0.706 - - - - 0.737 - - protein kinase C binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2199]
66. cdc25 cdc25 3913 1.442 0.739 - - - - - 0.703 - -
67. kmt2bb ENSDARG00000060697 5230 1.441 - - 0.716 - - - - - 0.725 lysine (K)-specific methyltransferase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080521-1]
68. max ENSDARG00000024844 6035 1.438 - - - 0.702 - - 0.736 - - myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
69. mark3 mark3 1375 1.435 - - - - - 0.724 - - 0.711
70. ylpm1 ENSDARG00000043680 7676 1.435 0.721 - 0.714 - - - - - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
71. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 1.426 - - - - - - 0.710 - 0.716 immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
72. TP53BP1 ENSDARG00000079000 997 1.426 - - 0.717 - - - - - 0.709 tumor protein p53 binding protein, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3695]
73. g3bp1 ENSDARG00000017741 7622 1.411 - 0.711 - - - - 0.700 - - GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
74. actr1 ENSDARG00000011611 3879 0.901 - 0.901 - - - - - - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
75. arglu1a ENSDARG00000019223 8716 0.893 - - - - - - - - 0.893 arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
76. emc6 ENSDARG00000035282 4981 0.885 - - - - - - - - 0.885 ER membrane protein complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9164]
77. lsm14ab ENSDARG00000100553 3837 0.883 - - - - - - - - 0.883 LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
78. CR354611.2 CR354611.2 2040 0.878 - - - - - - - - 0.878
79. ctgfa ENSDARG00000042934, ENSDARG00000112741 2123 0.874 - 0.874 - - - - - - - connective tissue growth factor a [Source:ZFIN;Acc:ZDB-GENE-030131-102]
80. eif4g2a ENSDARG00000020377, ENSDARG00000112658 6895 0.87 - - - - - - - - 0.870 eukaryotic translation initiation factor 4, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-2173]
81. kpnb3 ENSDARG00000040245 7967 0.87 - - - - - - - - 0.870 karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
82. C10H12orf44 C10H12orf44 787 0.864 - - - - - 0.864 - - -
83. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 0.861 - - - - - - 0.861 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
84. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 0.858 - - - - - - 0.858 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
85. plekha5 ENSDARG00000045870 1177 0.857 - - - - - - - 0.857 - pleckstrin homology domain containing, family A member 5 [Source:ZFIN;Acc:ZDB-GENE-041210-25]
86. sin3b ENSDARG00000062472 2025 0.856 - - - - - - 0.856 - - SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
87. srp68 ENSDARG00000020820 1719 0.856 - - - - - - - 0.856 - signal recognition particle 68 [Source:ZFIN;Acc:ZDB-GENE-040831-3]
88. myclb ENSDARG00000034956, ENSDARG00000110185 1466 0.855 - 0.855 - - - - - - - MYCL proto-oncogene, bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-5561]
89. slc7a6os ENSDARG00000010596 1599 0.855 - 0.855 - - - - - - - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
90. cstf2_1 ENSDARG00000090788 709 0.853 - 0.853 - - - - - - - cleavage stimulation factor, 3' pre-RNA, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-031118-2]
91. cant1a ENSDARG00000012192 1324 0.853 - - - - - - - 0.853 - calcium activated nucleotidase 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2441]
92. fam46ba 4575 0.852 - 0.852 - - - - - - - family with sequence similarity 46, member Ba
93. taf9 ENSDARG00000077870 6992 0.852 - - - - - - 0.852 - - TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-204]
94. rab2a ENSDARG00000020261 24540 0.85 - - - - - - - 0.850 - RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
95. rbb4l ENSDARG00000015208 5542 0.849 - - - - - - 0.849 - - retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
96. gtf2a1 ENSDARG00000011000 2026 0.847 - - - - - - - - 0.847 general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
97. galnt11 ENSDARG00000063636 1188 0.846 - 0.846 - - - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) [Source:ZFIN;Acc:ZDB-GENE-060929-998]
98. psmg1 ENSDARG00000040620 1359 0.846 - 0.846 - - - - - - - proteasome (prosome, macropain) assembly chaperone 1 [Source:ZFIN;Acc:ZDB-GENE-040718-469]
99. Mar-07 Mar-07 2926 0.845 - 0.845 - - - - - - -
100. si:rp71-17i16.6 ENSDARG00000095453 167 0.844 - 0.844 - - - - - - - si:rp71-17i16.6 [Source:ZFIN;Acc:ZDB-GENE-090313-410]

There are 923 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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