Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for scrt2

Gene Name Gene ID Reads Annotation
scrt2 ENSDARG00000056175 4331 scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]










Genes with expression patterns similar to scrt2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scrt2 ENSDARG00000056175 4331 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
2. slc1a2b ENSDARG00000102453 3136 4.49 0.805 0.908 - - 0.864 0.945 0.968 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
3. hpca ENSDARG00000018397, ENSDARG00000110115 3866 4.436 0.905 0.784 - - 0.931 0.906 0.910 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
4. nova2 ENSDARG00000017673 7685 4.416 0.857 0.872 - - 0.872 0.924 0.891 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
5. gap43 ENSDARG00000099744 4114 4.334 0.900 0.769 - - - 0.952 0.910 0.803 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
6. amph ENSDARG00000007663 599 3.859 0.933 0.976 - - - 0.963 0.987 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
7. SV2B SV2B 208 3.699 0.826 0.976 - - - 0.983 0.914 - -
8. snap25a ENSDARG00000020609 4537 3.695 0.887 0.908 - - - 0.980 0.920 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
9. stx1b ENSDARG00000000503 2724 3.692 0.845 0.911 - - - 0.969 0.967 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
10. MAP1A MAP1A 847 3.661 0.743 0.975 - - - 0.976 0.967 - -
11. stmn2a ENSDARG00000033234 2272 3.652 0.881 0.872 - - - 0.950 0.949 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
12. dbx1a ENSDARG00000086393 3161 3.626 - 0.837 - - - 0.852 0.957 - 0.980 developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
13. dpysl3 ENSDARG00000002587 4381 3.606 0.844 - - - 0.938 0.898 0.926 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
14. gnao1a ENSDARG00000016676 8184 3.601 0.856 - - - 0.949 - 0.932 0.864 - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
15. TUSC5 TUSC5 1436 3.599 0.861 0.807 - - - 0.943 0.988 - -
16. slc17a6b ENSDARG00000041150 823 3.597 0.811 0.895 - - - 0.932 0.959 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
17. scn8aa ENSDARG00000005775 792 3.573 0.790 0.859 - - - 0.935 0.989 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
18. cadm3 ENSDARG00000057013 1545 3.572 0.766 0.885 - - - 0.974 0.947 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
19. ZFHX3 ENSDARG00000103057 7759 3.534 0.869 - - - 0.878 0.889 0.898 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
20. pax6a ENSDARG00000103379 3061 3.53 0.775 0.828 - - - 0.936 0.991 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
21. mir10d-1 mir10d-1 860 3.527 0.806 0.917 - - - 0.904 0.900 - -
22. nadl1.1 1200 3.523 0.866 0.879 - - - 0.920 0.858 - - neural adhesion molecule L1.1, transcript variant X1
23. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 3.523 0.833 - - 0.877 - 0.867 0.946 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
24. mapk12b ENSDARG00000006409 2246 3.516 0.905 0.741 - - - 0.931 0.939 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
25. vsnl1a ENSDARG00000023228 1584 3.514 0.899 0.792 - - - 0.948 0.875 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
26. lhx1a ENSDARG00000014018 958 3.511 0.726 0.974 - - - 0.875 0.936 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
27. dbx2 2971 3.487 0.875 0.941 - - - 0.722 0.949 - - developing brain homeobox 2
28. pcdh1gc5 ENSDARG00000104826 10052 3.486 0.854 0.785 - - - 0.982 0.865 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
29. gng3 ENSDARG00000009553 2530 3.485 0.876 0.938 - - - 0.755 0.916 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
30. adam23a ENSDARG00000062323 580 3.482 0.940 0.813 - - - 0.963 0.766 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
31. syt11a ENSDARG00000057913 1145 3.47 0.817 0.896 - - - 0.928 0.829 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
32. rbfox3 rbfox3 1443 3.464 0.811 0.798 - - - 0.873 0.982 - -
33. si:ch73-21g5.7 ENSDARG00000093156 9412 3.458 0.803 0.835 - - - 0.900 0.920 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
34. slc32a1 ENSDARG00000059775 1092 3.45 0.747 0.777 - - - 0.957 0.969 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
35. dla ENSDARG00000010791 9281 3.45 0.861 0.720 - - 0.950 - 0.919 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
36. nes ENSDARG00000088805 2710 3.449 0.834 0.956 - - - 0.826 0.833 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
37. pcsk1nl ENSDARG00000076170 1232 3.438 0.751 0.875 - - - 0.934 0.878 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
38. hoxc4a ENSDARG00000070338 1382 3.413 0.701 - - - 0.942 0.943 0.827 - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
39. lhx5 ENSDARG00000057936 785 3.391 0.821 - - - - 0.945 0.890 0.735 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
40. rtn1b ENSDARG00000021143 1682 3.385 0.803 0.803 - - - 0.970 0.809 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
41. ctnnd2b ENSDARG00000003779 964 3.385 0.849 - - - 0.951 0.709 0.876 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
42. jag1a ENSDARG00000030289 1275 3.378 0.802 0.818 - - - 0.826 0.932 - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
43. tmem35 ENSDARG00000052567 5685 3.378 0.855 - 0.903 - - 0.803 0.817 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
44. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 3.362 0.799 0.734 - - - 0.993 0.836 - - neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
45. nkx1.2lb ENSDARG00000099427 220 3.36 0.705 0.841 - - - 0.875 0.939 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
46. scn2b ENSDARG00000101713 796 3.356 0.770 0.976 - - - 0.722 0.888 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
47. neurog1 ENSDARG00000056130 3924 3.353 0.850 0.798 - - - 0.788 0.917 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
48. sox2 ENSDARG00000070913 2763 3.329 0.856 0.897 - - - 0.763 0.813 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
49. CHL1 CHL1 1553 3.328 0.771 0.846 - - - 0.800 0.911 - -
50. tuba2 ENSDARG00000045014 1490 3.318 0.789 - - - - 0.907 0.909 0.713 - tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
51. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 3.317 0.728 0.760 - - - 0.913 0.916 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
52. entpd3 ENSDARG00000035309 263 3.277 0.840 0.790 - - - 0.737 0.910 - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
53. slc35g2b ENSDARG00000045447 378 3.253 0.813 0.879 - - - 0.744 0.817 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
54. C7H4orf48 C7H4orf48 1455 3.253 0.818 - - - - 0.968 0.751 0.716 -
55. zic4 ENSDARG00000031307 1228 3.25 0.794 0.824 - - - 0.924 0.708 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
56. LINGO2 LINGO2 300 3.249 0.780 0.746 - - - 0.831 0.892 - -
57. syngr3a ENSDARG00000014871 405 3.248 0.808 0.807 - - - 0.735 0.898 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
58. tnika ENSDARG00000056218 728 3.239 0.907 0.768 - - - 0.830 0.734 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
59. her4.3 ENSDARG00000070770 613 3.228 0.746 - - - 0.954 0.746 0.782 - - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
60. MAP6 MAP6 643 3.213 0.729 0.879 - - - 0.768 0.837 - -
61. stxbp5a ENSDARG00000002656 318 3.204 0.720 0.736 - - - 0.793 0.955 - - syntaxin binding protein 5a (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-041001-161]
62. C8H1orf106 C8H1orf106 2690 3.199 0.923 0.770 - - - 0.716 0.790 - -
63. CLIP3 ENSDARG00000054456 734 3.189 0.809 0.742 - - - 0.813 0.825 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
64. atp1a3a ENSDARG00000018259 5393 3.17 0.745 0.755 - - - 0.868 - 0.802 - ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
65. aatkb ENSDARG00000104442 392 3.154 0.784 - - - 0.939 0.707 0.724 - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
66. sox19b ENSDARG00000040266 532 3.141 0.772 0.779 - - - 0.732 0.858 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
67. atp2b3b ENSDARG00000023445 1424 3.14 0.752 0.721 - - - 0.911 0.756 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
68. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 3.134 0.898 0.746 - - - 0.752 0.738 - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
69. rufy3 ENSDARG00000029692 3031 3.13 0.866 0.736 - - - 0.753 0.775 - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
70. KCNAB2 KCNAB2 129 3.088 0.756 0.895 - - - 0.711 0.726 - -
71. sdhb ENSDARG00000075768 5493 2.916 - - 0.967 0.990 - - - - 0.959 succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:ZFIN;Acc:ZDB-GENE-030131-8005]
72. MCTP1 MCTP1 219 2.861 0.911 0.990 - - - 0.960 - - -
73. stmn4l ENSDARG00000043932 654 2.852 0.911 - - - - 0.964 0.977 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
74. sez6l2 ENSDARG00000076052 360 2.835 - 0.974 - - - 0.954 0.907 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
75. sv2bb ENSDARG00000060711 196 2.833 0.935 0.958 - - - - 0.940 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
76. gfap ENSDARG00000025301 5584 2.832 0.907 - - - - 0.978 0.947 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
77. tuba1c ENSDARG00000055216 8384 2.819 0.906 - - - - 0.973 0.940 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
78. notch1b ENSDARG00000052094 7874 2.798 - - - 0.994 - 0.884 0.920 - - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
79. kcnc3a ENSDARG00000055855 1821 2.798 0.875 - - - - 0.965 0.958 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
80. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.797 0.883 - - - - 0.941 0.973 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
81. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 2.796 0.941 - - - - 0.869 0.986 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
82. rab3ab ENSDARG00000043835 1267 2.789 0.878 - - - - 0.975 0.936 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
83. tmeff1b ENSDARG00000056740 11253 2.779 - - 0.987 - - 0.890 0.902 - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
84. GLRA3 ENSDARG00000011066 242 2.778 0.882 0.953 - - - - 0.943 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
85. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.778 0.897 - - - - 0.898 0.983 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
86. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.774 0.846 - - - - 0.968 0.960 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
87. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 2.772 - 0.904 - 0.988 - - 0.880 - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
88. INA INA 950 2.768 0.829 - - - - 0.949 0.990 - -
89. dpysl5a ENSDARG00000011141 1827 2.767 0.881 - - - - 0.911 0.975 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
90. ADAM22 ENSDARG00000060532 2259 2.759 - - - 0.997 - 0.890 0.872 - - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
91. grin1a ENSDARG00000027828 1327 2.756 - - - - - 0.872 0.909 - 0.975 glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
92. MAPK8IP1_1 MAPK8IP1_1 186 2.754 0.934 - - - - 0.911 0.909 - -
93. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 2.752 0.938 0.944 - - - 0.870 - - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
94. rap2ip rap2ip 681 2.75 - 0.974 - - - 0.955 0.821 - -
95. stmn1b ENSDARG00000033655 9491 2.745 0.895 - - - - 0.928 0.922 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
96. fez1 ENSDARG00000023174 701 2.744 0.810 - - - - 0.954 0.980 - - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
97. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.742 0.782 - - - - 0.990 0.970 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
98. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 2.737 0.885 0.976 - - - 0.876 - - - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
99. fgf13b ENSDARG00000056633 455 2.733 0.925 - - - - 0.874 0.934 - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
100. stxbp1a ENSDARG00000001994 5154 2.73 - 0.857 - - - 0.975 0.898 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]

There are 2685 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA