Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for scrt1a

Gene Name Gene ID Reads Annotation
scrt1a ENSDARG00000100821 2687 scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]










Genes with expression patterns similar to scrt1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scrt1a ENSDARG00000100821 2687 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
2. MAP1B ENSDARG00000060434, ENSDARG00000113782 1983 3.464 0.787 0.711 - - - 0.967 0.999 - - microtubule-associated protein 1B [Source:ZFIN;Acc:ZDB-GENE-130530-690]
3. C7H4orf48 C7H4orf48 1455 3.389 0.778 0.921 - - - 0.871 - 0.819 -
4. Sep-03 Sep-03 1124 3.31 0.801 0.791 0.788 - - 0.930 - - -
5. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.283 0.767 - 0.771 0.787 - 0.958 - - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
6. her4.1 ENSDARG00000056732 1264 3.25 0.737 - - - 0.755 0.955 - 0.803 - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
7. nbeaa ENSDARG00000070080 862 3.245 - 0.919 - 0.781 - 0.809 - 0.736 - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
8. insm1b ENSDARG00000053301 2032 3.229 - - - 0.727 0.728 0.787 0.987 - - insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
9. dpysl5a ENSDARG00000011141 1827 3.162 0.825 - 0.753 - 0.717 0.867 - - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
10. ZFHX3 ENSDARG00000103057 7759 3.142 0.729 - 0.864 - - 0.828 - 0.721 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
11. nes ENSDARG00000088805 2710 3.115 0.829 - - 0.709 0.776 0.801 - - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
12. zic1 ENSDARG00000015567 2520 3.053 0.796 - 0.772 - 0.715 0.770 - - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
13. celf4 ENSDARG00000070045 1537 2.687 0.871 - - - - 0.847 - - 0.969 CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
14. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 2.646 0.788 0.944 - - - 0.914 - - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
15. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 2.645 0.846 0.897 - - - 0.902 - - - doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
16. atp1a3a ENSDARG00000018259 5393 2.643 - - - - - 0.958 - 0.707 0.978 ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
17. adam11 ENSDARG00000079204 298 2.643 0.776 0.955 - - - 0.912 - - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
18. sox2 ENSDARG00000070913 2763 2.622 0.890 - - 0.755 - - - - 0.977 SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
19. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.617 - 0.962 - - - 0.890 - 0.765 - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
20. nova2 ENSDARG00000017673 7685 2.612 0.870 - - 0.813 - 0.929 - - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
21. nefma ENSDARG00000021351 790 2.607 0.740 - - - - 0.869 0.998 - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
22. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.571 0.873 0.731 - - - 0.967 - - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
23. adcyap1b ENSDARG00000027740 1539 2.566 0.781 0.853 - - - 0.932 - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
24. gabra5 ENSDARG00000070730 156 2.552 0.736 0.953 - - - 0.863 - - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
25. nell2b ENSDARG00000062797 854 2.543 0.830 - - - - 0.940 - 0.773 - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
26. tuba1c ENSDARG00000055216 8384 2.532 0.872 - - - 0.714 0.946 - - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
27. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.505 0.790 - - 0.831 - 0.884 - - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
28. mllt11 ENSDARG00000071026 2518 2.503 0.771 0.786 - - - 0.946 - - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
29. si:dkeyp-109b10.4 si:dkeyp-109b10.4 23 2.486 - 0.943 0.807 - 0.736 - - - -
30. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 2.485 - - - - - 0.718 0.973 0.794 - zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
31. cdk5r1b ENSDARG00000045087 2075 2.48 0.749 0.798 - - - 0.933 - - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
32. nrarpb ENSDARG00000018958 6225 2.453 0.852 - - 0.742 - 0.859 - - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
33. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 2.45 - - - - 0.830 0.832 - 0.788 - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
34. vamp1 ENSDARG00000031283 3094 2.449 0.754 0.722 - - - 0.973 - - - vesicle-associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2725]
35. SPOCK1 ENSDARG00000074644 794 2.448 - - 0.708 - - 0.956 - 0.784 - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
36. irx1a ENSDARG00000101831 644 2.445 - - 0.843 - 0.833 - - 0.769 - iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]
37. epb41a ENSDARG00000099283 860 2.44 - - - 0.709 - 0.781 - - 0.950 erythrocyte membrane protein band 4.1a [Source:ZFIN;Acc:ZDB-GENE-070705-81]
38. epha4b ENSDARG00000011600 3110 2.439 0.831 - - 0.706 - 0.902 - - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
39. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.431 0.755 - - 0.829 - - - 0.847 - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
40. CT990561.1 ENSDARG00000058284 566 2.429 - 0.838 - 0.833 0.758 - - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
41. AGO1 ENSDARG00000092644 4521 2.419 0.816 - 0.750 - - 0.853 - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
42. syt4 ENSDARG00000036505 421 2.413 0.850 - - - - 0.839 - 0.724 - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
43. pcdh1gc5 ENSDARG00000104826 10052 2.41 0.768 - 0.728 - - 0.914 - - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
44. gap43 ENSDARG00000099744 4114 2.406 0.779 - - - - 0.893 - 0.734 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
45. hmp19 2554 2.404 0.805 - - - - 0.819 - 0.780 - HMP19 protein
46. myt1b ENSDARG00000102879 5411 2.401 0.749 - - 0.767 - 0.885 - - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
47. ptprna ENSDARG00000058646 1327 2.396 - - 0.827 - 0.751 0.818 - - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
48. lhx5 ENSDARG00000057936 785 2.393 0.729 - - - - 0.881 - 0.783 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
49. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.382 0.774 - 0.743 - - 0.865 - - - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
50. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.374 0.712 0.731 - - - 0.931 - - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
51. CABZ01111990.1 CABZ01111990.1 4374 2.366 0.802 - 0.719 - - 0.845 - - -
52. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.358 0.737 - 0.747 - - 0.874 - - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
53. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 2.355 0.739 - - - - 0.873 - 0.743 - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
54. st8sia2 ENSDARG00000018788 2183 2.354 - - 0.785 0.781 - 0.788 - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
55. nhlh2 ENSDARG00000025495 1860 2.353 0.764 - - 0.727 - 0.862 - - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
56. wfikkn2a ENSDARG00000013460 859 2.352 - - 0.765 0.718 - 0.869 - - - info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-120914-1]
57. dync1i1 ENSDARG00000060948 554 2.348 0.754 - 0.757 - - 0.837 - - - dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
58. coe2 coe2 1633 2.336 - - - 0.773 - 0.832 - 0.731 -
59. npas3b npas3b 1446 2.322 - - 0.772 0.779 - 0.771 - - -
60. evx2 ENSDARG00000059255 317 2.322 - - 0.783 - - 0.829 - 0.710 - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
61. clstn1 ENSDARG00000031720 5286 2.31 0.740 - - 0.711 - 0.859 - - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
62. CR848045.1 CR848045.1 459 2.297 0.760 - 0.744 - - 0.793 - - -
63. si:ch73-21g5.7 ENSDARG00000093156 9412 2.294 0.775 - 0.798 - - 0.721 - - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
64. fzd3a ENSDARG00000021664 1958 2.288 - - 0.722 - 0.705 0.861 - - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
65. st8sia5 ENSDARG00000036584 529 2.288 0.707 0.840 - - - 0.741 - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
66. zgc:123194 zgc:123194 69174 2.278 0.807 - - - - 0.733 - 0.738 -
67. tfdp2 ENSDARG00000042835 1985 2.265 0.706 - - 0.733 - 0.826 - - - transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
68. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 2.264 0.768 - 0.767 0.729 - - - - - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
69. pou3f2a ENSDARG00000070220 817 2.251 - - - 0.824 0.717 0.710 - - - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
70. atp1b4 ENSDARG00000053262 1337 2.249 0.722 - 0.706 - - 0.821 - - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
71. ssbp4 ENSDARG00000056483 10196 2.235 - - - 0.714 - 0.751 - 0.770 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
72. C1QL4 C1QL4 93 2.225 0.711 - 0.795 - - 0.719 - - -
73. smarcb1b ENSDARG00000011594 2413 2.216 0.705 0.734 - - - - - 0.777 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b [Source:ZFIN;Acc:ZDB-GENE-991008-16]
74. her13 ENSDARG00000007097 2000 2.215 0.734 - 0.725 0.756 - - - - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
75. si:ch211-202e12.3 401 2.182 - - - 0.706 - 0.733 - 0.743 - si:ch211-202e12.3, transcript variant X6
76. mab21l2 ENSDARG00000015266 1687 2.166 - - 0.705 - 0.731 - - 0.730 - mab-21-like 2 [Source:ZFIN;Acc:ZDB-GENE-011101-3]
77. cap1 ENSDARG00000016350 891 1.938 - - - - - - 0.992 - 0.946 CAP, adenylate cyclase-associated protein 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6459]
78. nhsl1b ENSDARG00000042627 3697 1.933 - - - - - - 0.988 - 0.945 NHS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040910-1]
79. med14 ENSDARG00000009953 1383 1.903 - 0.909 - - - - 0.994 - - mediator complex subunit 14 [Source:ZFIN;Acc:ZDB-GENE-030131-8867]
80. INA INA 950 1.886 - 0.939 - - - 0.947 - - -
81. hiat1a ENSDARG00000013117 607 1.848 - 0.855 - - - - 0.993 - - hippocampus abundant transcript 1a [Source:ZFIN;Acc:ZDB-GENE-030131-834]
82. ARHGAP22 ENSDARG00000076434 1406 1.848 - - - - - 0.851 0.997 - - Rho GTPase activating protein 22 [Source:HGNC Symbol;Acc:HGNC:30320]
83. ncoa6 ENSDARG00000071272 759 1.845 - 0.852 - - - - 0.993 - - nuclear receptor coactivator 6 [Source:ZFIN;Acc:ZDB-GENE-080403-12]
84. snap25a ENSDARG00000020609 4537 1.831 0.864 - - - - 0.967 - - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
85. PRKAR2B ENSDARG00000036446 812 1.831 - - - - - 0.873 - - 0.958 protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
86. cldn19 ENSDARG00000044569 281 1.822 - 1.000 - - - 0.822 - - - claudin 19 [Source:ZFIN;Acc:ZDB-GENE-050417-242]
87. lhx1a ENSDARG00000014018 958 1.8 0.828 - - - - 0.972 - - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
88. slc32a1 ENSDARG00000059775 1092 1.8 0.850 - - - - 0.950 - - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
89. UBE2QL1 ENSDARG00000079276 3474 1.797 - - - - - 0.839 - - 0.958 ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
90. slc1a2b ENSDARG00000102453 3136 1.792 0.825 - - - - 0.967 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
91. TNRC6C_2 TNRC6C_2 2444 1.784 - - - - - 0.818 - - 0.966
92. dpysl3 ENSDARG00000002587 4381 1.779 0.835 - - - - 0.944 - - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
93. fgf13b ENSDARG00000056633 455 1.778 - 0.849 - - - 0.929 - - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
94. cx35.4 ENSDARG00000042866 685 1.773 - 0.785 - - - - 0.988 - - connexin 35.4 [Source:ZFIN;Acc:ZDB-GENE-050417-174]
95. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 1.772 0.827 - - - - 0.945 - - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
96. c6 ENSDARG00000057113, ENSDARG00000093052, ENSDARG00000115290 612 1.768 - 0.785 - - - - 0.983 - - complement component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1358]
97. clvs2 ENSDARG00000053122 1390 1.767 0.833 0.934 - - - - - - - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
98. SNAP91 ENSDARG00000098809 556 1.766 0.811 - - - - 0.955 - - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
99. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.763 0.781 - - - - - - - 0.982 zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
100. hoxc4a ENSDARG00000070338 1382 1.761 0.839 - - - - 0.922 - - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]

There are 2011 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA