Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scn1ba

Gene Name Gene ID Reads Annotation
scn1ba ENSDARG00000060222, ENSDARG00000115181 76 sodium channel, voltage-gated, type I, beta a [Source:ZFIN;Acc:ZDB-GENE-060503-604]










Genes with expression patterns similar to scn1ba

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scn1ba ENSDARG00000060222, ENSDARG00000115181 76 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sodium channel, voltage-gated, type I, beta a [Source:ZFIN;Acc:ZDB-GENE-060503-604]
2. sst6 ENSDARG00000093804, ENSDARG00000116656 31 1.948 - - - - - 0.948 1.000 - - somatostatin 6 [Source:ZFIN;Acc:ZDB-GENE-081022-199]
3. si:dkeyp-33c10.5 11 1.888 - - - - - 1.000 0.888 - - si:dkeyp-33c10.5, transcript variant X2
4. fsd1 ENSDARG00000062017 207 1.835 - 0.850 - - - 0.985 - - - fibronectin type III and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-218]
5. BX957297.2 ENSDARG00000105608 194 1.809 - 0.885 - - - - 0.924 - -
6. si:dkey-66i24.10 si:dkey-66i24.10 6 1.762 - - - - 0.831 - 0.931 - -
7. dlg2 ENSDARG00000099323 162 1.761 - 0.880 - - - 0.881 - - - discs, large homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050221-3]
8. JAKMIP1 ENSDARG00000076090 55 1.757 - - - - 0.757 1.000 - - - janus kinase and microtubule interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-110208-7]
9. si:ch211-168h21.3 10 1.754 - 0.754 - - - 1.000 - - - si:ch211-168h21.3
10. foxd1 ENSDARG00000029179 726 1.752 - 0.896 - - - - 0.856 - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
11. si:dkey-77f17.1 si:dkey-77f17.1 83 1.746 - - - - - 0.746 1.000 - -
12. si:dkey-122c11.4 si:dkey-122c11.4 13 1.737 - - - - 0.737 1.000 - - -
13. cabp2a ENSDARG00000052016 19 1.731 0.731 - - - - - 1.000 - - calcium binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-050913-25]
14. ZNF337_16 ZNF337_16 22 1.71 - 0.710 - - - 1.000 - - -
15. BX005294.2 ENSDARG00000109361 3 1.71 - 0.710 - - - 1.000 - - -
16. si:ch73-94f11.5 si:ch73-94f11.5 6 1.71 - 0.710 - - - 1.000 - - -
17. GAS2 18 1.71 - 0.710 - - - 1.000 - - - growth arrest specific 2, transcript variant X1
18. sez6l ENSDARG00000100594 35 1.704 - 0.710 - - - 0.994 - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
19. nmrk1 ENSDARG00000037913 18 1.679 - 0.710 - - - - 0.969 - - nicotinamide riboside kinase 1 [Source:ZFIN;Acc:ZDB-GENE-050320-8]
20. nlgn3a ENSDARG00000104786 91 1.678 - 0.895 - - - 0.783 - - - neuroligin 3a [Source:ZFIN;Acc:ZDB-GENE-071219-1]
21. six3a ENSDARG00000058008, ENSDARG00000114971 586 1.677 - - - - - 0.789 0.888 - - SIX homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-990415-127]
22. rpap2 ENSDARG00000038397 118 1.676 - 0.799 - - - 0.877 - - - RNA polymerase II associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-050522-420]
23. speg speg 334 1.671 0.822 - - - - - 0.849 - -
24. si:dkey-164n2.1 47 1.653 - 0.835 - - - - 0.818 - - si:dkey-164n2.1, transcript variant X1
25. CT573433.2 CT573433.2 115 1.629 - - - - - 0.923 0.706 - -
26. rab39b rab39b 449 1.615 - 0.850 - - - 0.765 - - -
27. mfge8a ENSDARG00000015349 66 1.614 - 0.806 - - - - 0.808 - - milk fat globule-EGF factor 8 protein a [Source:ZFIN;Acc:ZDB-GENE-050327-9]
28. GPR35 GPR35 32 1.613 - - - - - 0.712 0.901 - -
29. FAXC FAXC 102 1.605 - 0.710 - - - 0.895 - - -
30. pcyt1ba ENSDARG00000058162 206 1.589 - 0.710 - - - 0.879 - - - phosphate cytidylyltransferase 1, choline, beta a [Source:ZFIN;Acc:ZDB-GENE-061220-4]
31. zgc:112234_5 ENSDARG00000099514, ENSDARG00000102806, ENSDARG00000104588, ENSDARG00000105340, ENSDARG00000105393, ENSDARG00000105414, ENSDARG00000105468, ENSDARG00000105483, ENSDARG00000105507, ENSDARG00000111934 6 1.586 - 0.710 - - - - 0.876 - - zgc:112234 [Source:NCBI gene;Acc:554097]
32. cdh18 cdh18 64 1.574 - 0.710 - - - 0.864 - - -
33. si:dkey-199m13.9 si:dkey-199m13.9 20 1.57 - - - - 0.831 0.739 - - -
34. si:dkey-199m13.7 ENSDARG00000099837, ENSDARG00000111824 22 1.567 - 0.750 - - 0.817 - - - - si:dkey-199m13.7 [Source:ZFIN;Acc:ZDB-GENE-110914-26]
35. CSMD1 CSMD1 15 1.553 - 0.754 - - - 0.799 - - -
36. GADD45G_1 GADD45G_1 236 1.55 - 0.710 - - - 0.840 - - -
37. mhc1zca ENSDARG00000069471 21 1.548 - 0.703 - - 0.845 - - - - major histocompatibility complex class I ZCA [Source:ZFIN;Acc:ZDB-GENE-070424-4]
38. CU929230.1 ENSDARG00000030665 48 1.541 0.789 - - - - - 0.752 - - transcription elongation regulator 1b (CA150) [Source:NCBI gene;Acc:797473]
39. cnih3 ENSDARG00000014953 25 1.513 - 0.754 - - - - 0.759 - - cornichon family AMPA receptor auxiliary protein 3 [Source:ZFIN;Acc:ZDB-GENE-041001-180]
40. TRIM14_9 TRIM14_9 5 1.513 - 0.750 - 0.763 - - - - -
41. grik5 ENSDARG00000101449, ENSDARG00000111384 75 1.507 - 0.703 - - - 0.804 - - - glutamate receptor, ionotropic, kainate 5 [Source:ZFIN;Acc:ZDB-GENE-070821-6]
42. SKOR2 SKOR2 1041 1.502 - 0.780 - - - 0.722 - - -
43. RAB39B RAB39B 482 1.494 - 0.756 - - - 0.738 - - -
44. FBXO40_1 FBXO40_1 59 1.49 - 0.710 - - - - 0.780 - -
45. si:ch211-57m13.9 ENSDARG00000095884 10 1.485 - 0.710 - - 0.775 - - - - si:ch211-57m13.9 [Source:ZFIN;Acc:ZDB-GENE-110411-61]
46. RAPGEF4 ENSDARG00000079872 82 1.485 - 0.710 - - - 0.775 - - - Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
47. si:dkeyp-33e11.1 6 1.473 - 0.710 - 0.763 - - - - - si:dkeyp-33e11.1, transcript variant X3
48. zgc:153615 ENSDARG00000038981 105 1.472 - 0.710 - - - 0.762 - - - zgc:153615 [Source:ZFIN;Acc:ZDB-GENE-061110-79]
49. gpc2 ENSDARG00000104217 10 1.469 - 0.710 - - - - 0.759 - - glypican 2 [Source:ZFIN;Acc:ZDB-GENE-050302-31]
50. foxb1b ENSDARG00000053650, ENSDARG00000110408, ENSDARG00000113373 51 1.456 - 0.710 - - - 0.746 - - - forkhead box B1b [Source:ZFIN;Acc:ZDB-GENE-990415-77]
51. actl6b ENSDARG00000034107 9 1.449 - 0.710 - - - 0.739 - - - actin-like 6B [Source:ZFIN;Acc:ZDB-GENE-050522-191]
52. LYPLAL1 ENSDARG00000088764 87 1.408 0.705 0.703 - - - - - - - lysophospholipase-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-32]
53. CABZ01044048.1 ENSDARG00000011463 20 1 - - - - - 1.000 - - - coagulation factor IX-like [Source:NCBI gene;Acc:100004411]
54. nprl2 ENSDARG00000059613, ENSDARG00000112631 160 1 - - - - - 1.000 - - - NPR2 like, GATOR1 complex subunit [Source:ZFIN;Acc:ZDB-GENE-060825-93]
55. LAMA3 ENSDARG00000071462 5 1 - - - - - 1.000 - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
56. CU855686.1 CU855686.1 1 1 - - - - - - 1.000 - -
57. porcnl ENSDARG00000052455 29 1 - - - - - 1.000 - - - porcupine O-acyltransferase like [Source:ZFIN;Acc:ZDB-GENE-030131-5931]
58. si:dkey-4c15.6 si:dkey-4c15.6 6 1 - - - - - 1.000 - - -
59. ZNF365 ENSDARG00000087985 28 1 - - - - - - 1.000 - - zinc finger protein 365 [Source:ZFIN;Acc:ZDB-GENE-131121-260]
60. ppp4r4 ENSDARG00000010407 1 1 - - - - - 1.000 - - - protein phosphatase 4, regulatory subunit 4 [Source:ZFIN;Acc:ZDB-GENE-041001-164]
61. pygo1 ENSDARG00000098687 4 1 - - - - - 1.000 - - - pygopus family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-080204-62]
62. si:ch211-204c5.6 si:ch211-204c5.6 7 1 - - - - - - 1.000 - -
63. wu:fe11b02_1 wu:fe11b02_1 7 1 - - - - - 1.000 - - -
64. CABZ01009626.1 CABZ01009626.1 2 1 - - - - - 1.000 - - -
65. zgc:153921_1 ENSDARG00000020738, ENSDARG00000038405 19 1 - - - - - - 1.000 - - zgc:153921 [Source:ZFIN;Acc:ZDB-GENE-060929-816]
66. si:ch211-274p24.3 si:ch211-274p24.3 72 1 - - - - - 1.000 - - -
67. PRKCA_1 ENSDARG00000099841 12 1 - - - - - 1.000 - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
68. si:dkeyp-82a1.2 ENSDARG00000094192 2 1 - - - - - 1.000 - - - si:dkeyp-82a1.2 [Source:ZFIN;Acc:ZDB-GENE-081104-475]
69. RIC3_1 ENSDARG00000105549 2 1 - - - - - 1.000 - - - RIC3 acetylcholine receptor chaperone [Source:HGNC Symbol;Acc:HGNC:30338]
70. gabbr1a ENSDARG00000018967 2 1 - - - - - 1.000 - - - gamma-aminobutyric acid (GABA) B receptor, 1a [Source:ZFIN;Acc:ZDB-GENE-030904-5]
71. cecr1b 2 1 - - - - - 1.000 - - - cat eye syndrome chromosome region, candidate 1b
72. si:ch211-59g22.2 si:ch211-59g22.2 7 1 - - - - - 1.000 - - -
73. rbp1b rbp1b 36 1 - - - - - 1.000 - - -
74. cx45.6 cx45.6 26 1 - - - - - - 1.000 - -
75. MPST MPST 6 1 - - - - - - 1.000 - -
76. BX927362.1 ENSDARG00000097469 13 1 - - - - - 1.000 - - -
77. npy4r ENSDARG00000043341, ENSDARG00000113787 1 1 - - - - - 1.000 - - - neuropeptide Y receptor Y4 [Source:ZFIN;Acc:ZDB-GENE-980526-393]
78. BRINP3 BRINP3 11 1 - - - - - 1.000 - - -
79. si:ch211-128b10.4 si:ch211-128b10.4 3 1 - - - - - 1.000 - - -
80. TDRD6 ENSDARG00000070052 1 1 - - - - - 1.000 - - - tudor domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-041001-210]
81. slc43a3a ENSDARG00000059682 27 1 - - - - - - 1.000 - - solute carrier family 43, member 3a [Source:ZFIN;Acc:ZDB-GENE-110208-8]
82. BX005052.1 BX005052.1 16 1 - - - - - 1.000 - - -
83. shank3a ENSDARG00000063332 5 1 - - - - - 1.000 - - - SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]
84. CABZ01063402.1 CABZ01063402.1 64 1 - - - - - 1.000 - - -
85. nr1d4a ENSDARG00000031161 24 1 - - - - - 1.000 - - - nuclear receptor subfamily 1, group D, member 4a [Source:ZFIN;Acc:ZDB-GENE-080403-5]
86. si:dkeyp-67e1.8 si:dkeyp-67e1.8 6 1 - - - - - 1.000 - - -
87. FBLN7 ENSDARG00000089519 4 1 - - - - - 1.000 - - - fibulin 7 [Source:ZFIN;Acc:ZDB-GENE-170130-2]
88. trpa1b ENSDARG00000031875 39 1 - - - - - 1.000 - - - transient receptor potential cation channel, subfamily A, member 1b [Source:ZFIN;Acc:ZDB-GENE-050106-1]
89. KCNA2_1 KCNA2_1 15 1 - - - - - 1.000 - - -
90. CUZD1_1 CUZD1_1 3 1 - - - - - - 1.000 - -
91. skor1a ENSDARG00000069030 19 1 - - - - - 1.000 - - - SKI family transcriptional corepressor 1a [Source:ZFIN;Acc:ZDB-GENE-080722-5]
92. si:ch211-195i24.1 si:ch211-195i24.1 10 1 - - - - - 1.000 - - -
93. ARHGEF10L ARHGEF10L 18 1 - - - - - 1.000 - - -
94. si:ch211-214c7.4 ENSDARG00000069595 56 1 - - - - - 1.000 - - - si:ch211-214c7.4 [Source:ZFIN;Acc:ZDB-GENE-030131-6275]
95. crygm2d6 ENSDARG00000073874 38 1 - - - - - - 1.000 - - crystallin, gamma M2d6 [Source:ZFIN;Acc:ZDB-GENE-040625-145]
96. DXO ENSDARG00000036852 16 1 - - - - - - 1.000 - - decapping exoribonuclease [Source:HGNC Symbol;Acc:HGNC:2992]
97. C9H3orf38 C9H3orf38 83 1 - - - - - - 1.000 - -
98. nmu ENSDARG00000043299 67 1 - - - - - 1.000 - - - neuromedin U [Source:ZFIN;Acc:ZDB-GENE-041001-111]
99. pde6c ENSDARG00000100397 49 1 - - - - - - 1.000 - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
100. adarb1b ENSDARG00000003544 31 1 - - - - - - 1.000 - - adenosine deaminase, RNA-specific, B1b [Source:ZFIN;Acc:ZDB-GENE-030219-15]

There are 1226 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA