Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for scn1a_1

Gene Name Gene ID Reads Annotation
scn1a_1 2 sodium channel, voltage-gated, type I, alpha, transcript variant X1










Genes with expression patterns similar to scn1a_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scn1a_1 2 2 - - 1.000 - - - - - 1.000 sodium channel, voltage-gated, type I, alpha, transcript variant X1
2. CABZ01049058.1 CABZ01049058.1 7 1.978 - - 1.000 - - - - - 0.978
3. flnb ENSDARG00000092281 10 1.842 - - 1.000 - - - - - 0.842 filamin B, beta (actin binding protein 278) [Source:ZFIN;Acc:ZDB-GENE-041026-1]
4. si:dkey-240n22.6 ENSDARG00000089296, ENSDARG00000106998 3 1 - - 1.000 - - - - - - si:dkey-240n22.6 [Source:ZFIN;Acc:ZDB-GENE-070705-411]
5. fbn2a ENSDARG00000051896 2 1 - - 1.000 - - - - - - fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
6. anpepb ENSDARG00000103878 8 1 - - 1.000 - - - - - - alanyl (membrane) aminopeptidase b [Source:ZFIN;Acc:ZDB-GENE-030131-1253]
7. fam151a ENSDARG00000058218 40 1 - - 1.000 - - - - - - family with sequence similarity 151, member A [Source:ZFIN;Acc:ZDB-GENE-070705-105]
8. tmprss3a ENSDARG00000053315 5 1 - - - - - - - - 1.000 transmembrane serine protease 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
9. ftr53 ENSDARG00000041220, ENSDARG00000110329, ENSDARG00000110400, ENSDARG00000116082 18 1 - - - - - - - - 1.000 finTRIM family, member 53 [Source:ZFIN;Acc:ZDB-GENE-030616-515]
10. si:dkey-11f14.2 si:dkey-11f14.2 2 1 - - - - - - - - 1.000
11. asb10 ENSDARG00000099461 27 1 - - 1.000 - - - - - - ankyrin repeat and SOCS box containing 10 [Source:ZFIN;Acc:ZDB-GENE-060929-1106]
12. crygm2d9 ENSDARG00000115701 28 1 - - 1.000 - - - - - - crystallin, gamma M2d9 [Source:ZFIN;Acc:ZDB-GENE-081105-81]
13. TNFRSF14_7 TNFRSF14_7 0 1 - - 1.000 - - - - - -
14. lox lox 7 1 - - 1.000 - - - - - -
15. 5S_rRNA_24 5S_rRNA_24 0 1 - - 1.000 - - - - - -
16. si:dkeyp-72g6.3 si:dkeyp-72g6.3 2 1 - - 1.000 - - - - - -
17. ppid ENSDARG00000038835 2 1 - - 1.000 - - - - - - peptidylprolyl isomerase D [Source:ZFIN;Acc:ZDB-GENE-040625-34]
18. si:dkey-106l3.6 0 1 - - 1.000 - - - - - - si:dkey-106l3.6
19. XKR8 XKR8 9 1 - - 1.000 - - - - - -
20. mrap ENSDARG00000091992 9 1 - - 1.000 - - - - - - melanocortin 2 receptor accessory protein [Source:ZFIN;Acc:ZDB-GENE-060503-387]
21. kiss2 ENSDARG00000077985 2 1 - - 1.000 - - - - - - kisspeptin 2 [Source:ZFIN;Acc:ZDB-GENE-090526-1]
22. ATXN1L ENSDARG00000086977 4 1 - - 1.000 - - - - - - ataxin 1-like [Source:ZFIN;Acc:ZDB-GENE-090908-1]
23. si:ch73-167f18.4 si:ch73-167f18.4 9 1 - - 1.000 - - - - - -
24. ARHGAP21 ARHGAP21 1 1 - - - - - - - - 1.000
25. manba_1 ENSDARG00000008238 8 1 - - - - - - - - 1.000 mannosidase, beta A, lysosomal [Source:ZFIN;Acc:ZDB-GENE-040426-721]
26. lctla ENSDARG00000036139, ENSDARG00000116316 32 1 - - 1.000 - - - - - - lactase-like a [Source:ZFIN;Acc:ZDB-GENE-040718-233]
27. PLCXD1_2 PLCXD1_2 9 1 - - 1.000 - - - - - -
28. wnt7ba ENSDARG00000022858 1 1 - - 1.000 - - - - - - wingless-type MMTV integration site family, member 7Ba [Source:ZFIN;Acc:ZDB-GENE-041210-178]
29. RBBP6_3 RBBP6_3 34 1 - - 1.000 - - - - - -
30. hfm1 ENSDARG00000104288 9 1 - - 1.000 - - - - - - HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061207-43]
31. IQCK ENSDARG00000076831, ENSDARG00000112508 6 1 - - 1.000 - - - - - - IQ motif containing K [Source:ZFIN;Acc:ZDB-GENE-081022-109]
32. cth1 ENSDARG00000057328 13 1 - - 1.000 - - - - - - cysteine three histidine 1 [Source:ZFIN;Acc:ZDB-GENE-990806-20]
33. lim2.5 ENSDARG00000041295 56 1 - - 1.000 - - - - - - lens intrinsic membrane protein 2.5 [Source:ZFIN;Acc:ZDB-GENE-050320-94]
34. CU652893.1 ENSDARG00000104131 3 1 - - 1.000 - - - - - -
35. si:dkey-237i9.8 ENSDARG00000103020 3 1 - - 1.000 - - - - - - si:dkey-237i9.8 [Source:ZFIN;Acc:ZDB-GENE-120215-145]
36. FAM149A ENSDARG00000073709 7 1 - - - - - - - - 1.000 family with sequence similarity 149 member A [Source:ZFIN;Acc:ZDB-GENE-081107-36]
37. wibg wibg 2 1 - - 1.000 - - - - - -
38. pstpip1b ENSDARG00000053568, ENSDARG00000116801 0 1 - - 1.000 - - - - - - proline-serine-threonine phosphatase interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-051127-25]
39. si:dkeyp-69b9.4 si:dkeyp-69b9.4 0 1 - - 1.000 - - - - - -
40. IFITM10 IFITM10 4 1 - - 1.000 - - - - - -
41. cilp2 ENSDARG00000013687 70 1 - - 1.000 - - - - - - cartilage intermediate layer protein 2 [Source:ZFIN;Acc:ZDB-GENE-050208-436]
42. pxn pxn 10 1 - - - - - - - - 1.000
43. rab3da ENSDARG00000018107 28 1 - - - - - - - - 1.000 RAB3D, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-080722-14]
44. CR847844.5 CR847844.5 5 1 - - - - - - - - 1.000
45. ftr64 ENSDARG00000101514 33 1 - - 1.000 - - - - - - finTRIM family, member 64 [Source:ZFIN;Acc:ZDB-GENE-090508-8]
46. st3gal1 ENSDARG00000079654 4 1 - - 1.000 - - - - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060321-1]
47. zgc:112965 ENSDARG00000007787 5 1 - - - - - - - - 1.000 zgc:112965 [Source:ZFIN;Acc:ZDB-GENE-050522-10]
48. si:dkey-266f7.10 ENSDARG00000086613 7 1 - - 1.000 - - - - - - si:dkey-266f7.10 [Source:ZFIN;Acc:ZDB-GENE-120215-242]
49. cpn1_1 ENSDARG00000005185, ENSDARG00000096728 2 1 - - 1.000 - - - - - - carboxypeptidase N, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9116]
50. lrguk ENSDARG00000069698 5 1 - - - - - - - - 1.000 leucine-rich repeats and guanylate kinase domain containing [Source:ZFIN;Acc:ZDB-GENE-050419-232]
51. si:ch211-209j12.1 ENSDARG00000101634 2 1 - - - - - - - - 1.000 si:ch211-209j12.1 [Source:ZFIN;Acc:ZDB-GENE-120709-44]
52. nabp1b ENSDARG00000043685 5 1 - - 1.000 - - - - - - nucleic acid binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-050913-74]
53. zdhhc18a ENSDARG00000069807 8 1 - - 1.000 - - - - - - zinc finger, DHHC-type containing 18a [Source:ZFIN;Acc:ZDB-GENE-060929-424]
54. crygm2d7 ENSDARG00000076572, ENSDARG00000116634 229 1 - - 1.000 - - - - - - crystallin, gamma M2d7 [Source:ZFIN;Acc:ZDB-GENE-060918-5]
55. si:ch211-165f21.6 si:ch211-165f21.6 5 1 - - 1.000 - - - - - -
56. pth1b ENSDARG00000091961, ENSDARG00000115353 5 1 - - 1.000 - - - - - - parathyroid hormone 1b [Source:ZFIN;Acc:ZDB-GENE-040623-2]
57. wwox ENSDARG00000007614 0 1 - - 1.000 - - - - - - WW domain containing oxidoreductase [Source:ZFIN;Acc:ZDB-GENE-040426-858]
58. CMA1_8 CMA1_8 10 1 - - 1.000 - - - - - -
59. si:dkey-9a20.8 si:dkey-9a20.8 8 1 - - 1.000 - - - - - -
60. BX000348.1 BX000348.1 2 1 - - 1.000 - - - - - -
61. BMP10 ENSDARG00000061769 3 1 - - 1.000 - - - - - - bone morphogenetic protein 10 [Source:ZFIN;Acc:ZDB-GENE-060526-211]
62. col6a3_1 ENSDARG00000077139, ENSDARG00000095915 2 1 - - - - - - - - 1.000 collagen, type VI, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070501-8]
63. si:dkey-109j17.5 ENSDARG00000104891 2 1 - - 1.000 - - - - - - si:dkey-109j17.5 [Source:ZFIN;Acc:ZDB-GENE-090313-173]
64. si:ch211-163m16.2 si:ch211-163m16.2 1 1 - - 1.000 - - - - - -
65. si:dkey-17e6.1 si:dkey-17e6.1 1 1 - - 1.000 - - - - - -
66. si:ch211-13b16.1 si:ch211-13b16.1 1 1 - - 1.000 - - - - - -
67. RAC1_1 RAC1_1 0 1 - - 1.000 - - - - - -
68. si:dkeyp-118h3.7 si:dkeyp-118h3.7 1 1 - - - - - - - - 1.000
69. zbtb16a ENSDARG00000007184 6 1 - - 1.000 - - - - - - zinc finger and BTB domain containing 16a [Source:ZFIN;Acc:ZDB-GENE-030131-1989]
70. si:dkey-2j6.2 si:dkey-2j6.2 5 1 - - 1.000 - - - - - -
71. cnn1a ENSDARG00000017193 6 1 - - 1.000 - - - - - - calponin 1, basic, smooth muscle, a [Source:ZFIN;Acc:ZDB-GENE-090312-141]
72. si:dkey-233e3.2 3 1 - - 1.000 - - - - - - si:dkey-233e3.2, transcript variant X1
73. si:dkey-46c2.2 si:dkey-46c2.2 2 1 - - 1.000 - - - - - -
74. BX255935.2 BX255935.2 0 1 - - 1.000 - - - - - -
75. BX649431.1 ENSDARG00000098522 13 1 - - 1.000 - - - - - -
76. crygmxl1 ENSDARG00000018797 7 1 - - 1.000 - - - - - - crystallin, gamma MX, like 1 [Source:ZFIN;Acc:ZDB-GENE-050522-392]
77. gdpd3b ENSDARG00000006944 19 1 - - 1.000 - - - - - - glycerophosphodiester phosphodiesterase domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-121210-2]
78. tmprss4b ENSDARG00000012860 6 1 - - 1.000 - - - - - - transmembrane serine protease 4b [Source:ZFIN;Acc:ZDB-GENE-030131-5862]
79. zmat4a ENSDARG00000092987, ENSDARG00000111611 1 1 - - 1.000 - - - - - - zinc finger, matrin-type 4a [Source:ZFIN;Acc:ZDB-GENE-081104-333]
80. BX005356.3 BX005356.3 4 1 - - 1.000 - - - - - -
81. si:dkey-7i4.1 ENSDARG00000086897 2 1 - - 1.000 - - - - - - si:dkey-7i4.1 [Source:ZFIN;Acc:ZDB-GENE-081028-64]
82. si:dkey-84h14.3 si:dkey-84h14.3 3 1 - - 1.000 - - - - - -
83. cbln2a ENSDARG00000074601 12 1 - - 1.000 - - - - - - cerebellin 2a precursor [Source:ZFIN;Acc:ZDB-GENE-070912-591]
84. KHNYN ENSDARG00000092488 10 1 - - - - - - - - 1.000 KH and NYN domain containing [Source:ZFIN;Acc:ZDB-GENE-141215-64]
85. si:dkey-40h20.1 ENSDARG00000095252 5 0.998 - - - - - - - - 0.998 si:dkey-40h20.1 [Source:ZFIN;Acc:ZDB-GENE-091113-44]
86. arhgap30 arhgap30 6 0.993 - - - - - - - - 0.993
87. gpr176 ENSDARG00000042515 5 0.979 - - - - - - - - 0.979 G protein-coupled receptor 176 [Source:ZFIN;Acc:ZDB-GENE-041001-183]
88. RNH1_2 RNH1_2 12 0.978 - - - - - - - - 0.978
89. crygm2d1 ENSDARG00000087324 258 0.969 - - 0.969 - - - - - - crystallin, gamma M2d1 [Source:ZFIN;Acc:ZDB-GENE-050522-395]
90. CABZ01109624.1 CABZ01109624.1 25 0.964 - - - - - - - - 0.964
91. si:ch211-113a14.19 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 22 0.963 - - - - - - - - 0.963 si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
92. H2AFX_1 H2AFX_1 28 0.948 - - - - - - - - 0.948
93. zgc:165347_1 zgc:165347_1 69 0.947 - - 0.947 - - - - - -
94. TMEM240 TMEM240 13 0.947 - - - - - - - - 0.947
95. zp3b ENSDARG00000039828 15 0.947 - - - - - - - - 0.947 zona pellucida glycoprotein 3b [Source:ZFIN;Acc:ZDB-GENE-031124-2]
96. n6amt2 7 0.943 - - - - - - - - 0.943 N-6 adenine-specific DNA methyltransferase 2 (putative), transcript variant X1
97. large 9 0.938 - - - - - - - - 0.938 like-glycosyltransferase, transcript variant X1
98. kctd12b ENSDARG00000037507, ENSDARG00000111869 21 0.931 - - - - - - - - 0.931 potassium channel tetramerisation domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-050417-104]
99. crygm2d5 ENSDARG00000069792 207 0.929 - - 0.929 - - - - - - crystallin, gamma M2d5 [Source:ZFIN;Acc:ZDB-GENE-060918-4]
100. crygm2d4 ENSDARG00000087164, ENSDARG00000115295 138 0.927 - - 0.927 - - - - - - crystallin, gamma M2d4 [Source:ZFIN;Acc:ZDB-GENE-060918-3]

There are 84 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA