Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scn1a

Gene Name Gene ID Reads Annotation
scn1a 8 sodium channel, voltage-gated, type I, alpha, transcript variant X1










Genes with expression patterns similar to scn1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scn1a 8 7 1.000 1.000 1.000 - 1.000 1.000 - 1.000 1.000 sodium channel, voltage-gated, type I, alpha, transcript variant X1
2. slc18a2 ENSDARG00000015110, ENSDARG00000115207 6 2.705 - - - - - 1.000 - 0.705 1.000 solute carrier family 18 (vesicular monoamine transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-080514-1]
3. CNTNAP3 ENSDARG00000067824 25 2.694 0.713 1.000 - - 0.981 - - - - contactin associated protein like 3 [Source:ZFIN;Acc:ZDB-GENE-091113-51]
4. dph2 ENSDARG00000078077 36 2.458 0.838 0.736 - - 0.884 - - - - DPH2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030219-100]
5. si:dkey-93m18.5 si:dkey-93m18.5 2 2 - - - - - 1.000 - - 1.000
6. BX000999.2 BX000999.2 2353 2 1.000 1.000 - - - - - - -
7. DSEL DSEL 1 2 1.000 - - - - - - - 1.000
8. si:ch211-132b12.7 ENSDARG00000068374 30 2 1.000 - - - - 1.000 - - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
9. CU861664.1 CU861664.1 53 2 - 1.000 - - - 1.000 - - -
10. LOXL2 LOXL2 2 2 - 1.000 - - - 1.000 - - -
11. CABZ01056274.1 CABZ01056274.1 3 2 - 1.000 - - - - - - 1.000
12. si:dkey-188i13.8 ENSDARG00000092725 1 2 - - - - - 1.000 - - 1.000 si:dkey-188i13.8 [Source:ZFIN;Acc:ZDB-GENE-090312-93]
13. c6ast1 ENSDARG00000069216 8 2 1.000 - - - - 1.000 - - - six-cysteine containing astacin protease 1 [Source:ZFIN;Acc:ZDB-GENE-070621-1]
14. si:dkey-65b12.13 si:dkey-65b12.13 7 2 - 1.000 - - - 1.000 - - -
15. pwwp2b ENSDARG00000101080 138 2 - 1.000 - - - 1.000 - - - PWWP domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-110930-2]
16. si:dkey-51d8.6 ENSDARG00000090769 17 2 1.000 1.000 - - - - - - - si:dkey-51d8.6 [Source:ZFIN;Acc:ZDB-GENE-110914-115]
17. BX321870.1 ENSDARG00000098519 9 2 - - - - - 1.000 - - 1.000
18. si:dkey-98f17.5 ENSDARG00000068863, ENSDARG00000116489 7 2 - 1.000 - - - - - - 1.000 si:dkey-98f17.5 [Source:ZFIN;Acc:ZDB-GENE-060526-354]
19. si:ch211-113a14.19_1 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 15 2 - 1.000 - - - - - - 1.000 si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
20. si:dkey-4j21.1 17 2 - - - - - 1.000 - - 1.000 si:dkey-4j21.1, transcript variant X2
21. zgc:110789 ENSDARG00000052497, ENSDARG00000111073 171 2 1.000 1.000 - - - - - - - zgc:110789 [Source:ZFIN;Acc:ZDB-GENE-050306-38]
22. KCNN2 ENSDARG00000014939 25 1.983 0.983 1.000 - - - - - - - potassium calcium-activated channel subfamily N member 2 [Source:HGNC Symbol;Acc:HGNC:6291]
23. lonrf1 ENSDARG00000075048 13 1.972 - 1.000 - - 0.972 - - - - LON peptidase N-terminal domain and ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-101021-4]
24. CU672227.1 ENSDARG00000105807 15 1.954 1.000 - - - 0.954 - - - -
25. ggcta ENSDARG00000076406 33 1.893 - - 0.893 - - 1.000 - - - gamma-glutamylcyclotransferase a [Source:ZFIN;Acc:ZDB-GENE-081104-129]
26. fbxo43 ENSDARG00000104186 40 1.889 1.000 0.889 - - - - - - - F-box protein 43 [Source:ZFIN;Acc:ZDB-GENE-040426-1645]
27. c1ql3a ENSDARG00000010350 179 1.875 - - - - 0.875 1.000 - - - complement component 1, q subcomponent-like 3a [Source:ZFIN;Acc:ZDB-GENE-080417-1]
28. ENSDARG00000092910 ENSDARG00000092910 44 1.871 0.871 1.000 - - - - - - -
29. org ENSDARG00000076474 16 1.87 - - - - 0.870 - - - 1.000 oogenesis-related gene [Source:ZFIN;Acc:ZDB-GENE-050208-584]
30. impact ENSDARG00000043288 7 1.861 - - 0.861 - - 1.000 - - - impact RWD domain protein [Source:ZFIN;Acc:ZDB-GENE-040927-10]
31. HIST1H2BA ENSDARG00000116654 10 1.854 1.000 - 0.854 - - - - - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
32. si:dkey-23a23.2 ENSDARG00000023036 123 1.815 0.916 0.899 - - - - - - - si:dkey-23a23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-158]
33. FJX1 ENSDARG00000035873 22 1.811 - - 0.811 - - - - - 1.000 four jointed box 1 [Source:ZFIN;Acc:ZDB-GENE-100422-10]
34. usp47 ENSDARG00000102645 16 1.799 1.000 0.799 - - - - - - - ubiquitin specific peptidase 47 [Source:ZFIN;Acc:ZDB-GENE-070719-7]
35. tmem168b ENSDARG00000062168 17 1.797 - - - - - 1.000 - - 0.797 transmembrane protein 168b [Source:ZFIN;Acc:ZDB-GENE-090406-3]
36. si:dkey-117n7.2 ENSDARG00000093135 40 1.796 - - - - 0.796 1.000 - - - si:dkey-117n7.2 [Source:ZFIN;Acc:ZDB-GENE-060503-49]
37. SNORA81_1 SNORA81_1 8 1.794 - - 0.794 - - 1.000 - - -
38. si:dkey-122c11.4 si:dkey-122c11.4 13 1.761 1.000 - - - - - - - 0.761
39. CU367845.1 CU367845.1 215 1.756 0.756 1.000 - - - - - - -
40. mamdc2b ENSDARG00000073695 26 1.749 1.000 - - - - - - - 0.749 MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
41. SLX1A SLX1A 15 1.742 - 1.000 - - - 0.742 - - -
42. omga ENSDARG00000086573 3 1.742 - 1.000 - - - 0.742 - - - oligodendrocyte myelin glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-091204-203]
43. ccdc127a 39 1.741 0.741 - - - - 1.000 - - - coiled-coil domain containing 127a, transcript variant X2
44. klhl5 ENSDARG00000062122, ENSDARG00000114563, ENSDARG00000115909 27 1.741 0.741 1.000 - - - - - - - kelch-like family member 5 [Source:ZFIN;Acc:ZDB-GENE-080424-7]
45. mapk8a ENSDARG00000031888 44 1.735 0.842 0.893 - - - - - - - mitogen-activated protein kinase 8a [Source:ZFIN;Acc:ZDB-GENE-080218-17]
46. LIX1 ENSDARG00000052154 9 1.723 0.723 - - - - - - - 1.000 limb and CNS expressed 1 [Source:ZFIN;Acc:ZDB-GENE-060526-123]
47. DLGAP2 DLGAP2 36 1.723 0.723 1.000 - - - - - - -
48. gata2b ENSDARG00000009094 16 1.71 - - - - - 1.000 - 0.710 - GATA binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040718-440]
49. MYCT1 MYCT1 64 1.707 - 1.000 - - - 0.707 - - -
50. si:ch211-222k6.1 20 1.687 - 0.714 - - 0.973 - - - - si:ch211-222k6.1, transcript variant X6
51. hpse ENSDARG00000063634, ENSDARG00000112827 35 1.686 0.823 - 0.863 - - - - - - heparanase [Source:ZFIN;Acc:ZDB-GENE-041111-200]
52. rsph4a ENSDARG00000067606 132 1.631 - 0.889 - - - 0.742 - - - radial spoke head component 4A [Source:ZFIN;Acc:ZDB-GENE-030131-7437]
53. C1S_1 C1S_1 11 1.575 - 0.714 0.861 - - - - - -
54. atad5b ENSDARG00000101126, ENSDARG00000111647, ENSDARG00000116936 16 1.544 - 0.705 - - - - - 0.839 - ATPase family, AAA domain containing 5b [Source:ZFIN;Acc:ZDB-GENE-030131-338]
55. stim1b ENSDARG00000061560 146 1.485 0.760 - - - 0.725 - - - - stromal interaction molecule 1b [Source:ZFIN;Acc:ZDB-GENE-060531-4]
56. nr4a2a ENSDARG00000017007 140 1.437 0.723 0.714 - - - - - - - nuclear receptor subfamily 4, group A, member 2a [Source:ZFIN;Acc:ZDB-GENE-990415-184]
57. si:dkey-24i24.3 ENSDARG00000088452 27 1 - - - - - 1.000 - - - si:dkey-24i24.3 [Source:ZFIN;Acc:ZDB-GENE-110411-103]
58. PDE9A_1 PDE9A_1 1 1 - 1.000 - - - - - - -
59. ftr42 4 1 1.000 - - - - - - - - finTRIM family, member 42
60. myl2b ENSDARG00000053424 226 1 1.000 - - - - - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
61. TTC40 TTC40 1 1 - 1.000 - - - - - - -
62. dand5 ENSDARG00000036471 8 1 1.000 - - - - - - - - DAN domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040421-2]
63. CR774179.1 ENSDARG00000086969 3 1 - - - - - - - - 1.000
64. si:dkeyp-82h4.2 si:dkeyp-82h4.2 494 1 - 1.000 - - - - - - -
65. zgc:153116 ENSDARG00000077205 7 1 - - - - - 1.000 - - - zgc:153116 [Source:ZFIN;Acc:ZDB-GENE-060825-107]
66. zgc:173716 9 1 - 1.000 - - - - - - - zgc:173716
67. ARSI_1 ARSI_1 38 1 1.000 - - - - - - - -
68. drd2l ENSDARG00000014858 1 1 1.000 - - - - - - - - dopamine receptor D2 like [Source:ZFIN;Acc:ZDB-GENE-030910-1]
69. BX119910.3 BX119910.3 7 1 1.000 - - - - - - - -
70. ccdc33 ENSDARG00000051858 11 1 - 1.000 - - - - - - - coiled-coil domain containing 33 [Source:ZFIN;Acc:ZDB-GENE-101011-1]
71. me1 ENSDARG00000053215 107 1 1.000 - - - - - - - - malic enzyme 1, NADP(+)-dependent, cytosolic [Source:ZFIN;Acc:ZDB-GENE-061013-438]
72. SLCO5A1 SLCO5A1 6 1 - 1.000 - - - - - - -
73. sp2 ENSDARG00000076763, ENSDARG00000113443, ENSDARG00000115477 20 1 - 1.000 - - - - - - - sp2 transcription factor [Source:ZFIN;Acc:ZDB-GENE-080410-1]
74. CABZ01012080.1 CABZ01012080.1 10 1 - 1.000 - - - - - - -
75. CABZ01079981.1 CABZ01079981.1 8 1 - - - - - 1.000 - - -
76. ptchd4 ENSDARG00000008249 17 1 1.000 - - - - - - - - patched domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041001-178]
77. si:dkey-149m13.2 si:dkey-149m13.2 1 1 - - - - - - - - 1.000
78. rgs8 ENSDARG00000070037, ENSDARG00000111478 37 1 1.000 - - - - - - - - regulator of G protein signaling 8 [Source:ZFIN;Acc:ZDB-GENE-040718-264]
79. ppid_1 ENSDARG00000038835 4 1 - - - - - - - - 1.000 peptidylprolyl isomerase D [Source:ZFIN;Acc:ZDB-GENE-040625-34]
80. ttc6 ENSDARG00000104125 7 1 - - - - - - - - 1.000 tetratricopeptide repeat domain 6 [Source:ZFIN;Acc:ZDB-GENE-090429-2]
81. CPNE8 ENSDARG00000025189 11 1 - 1.000 - - - - - - - copine VIII [Source:ZFIN;Acc:ZDB-GENE-100809-1]
82. si:dkey-153k10.14 si:dkey-153k10.14 0 1 - - - - - 1.000 - - -
83. zgc:174642_1 zgc:174642_1 20 1 - 1.000 - - - - - - -
84. nsdhl ENSDARG00000099315 63 1 - 1.000 - - - - - - - NAD(P) dependent steroid dehydrogenase-like [Source:ZFIN;Acc:ZDB-GENE-050417-163]
85. si:dkey-91i10.7 si:dkey-91i10.7 9 1 - 1.000 - - - - - - -
86. cyp2p9 ENSDARG00000022631 1 1 - - - - - - - - 1.000 cytochrome P450, family 2, subfamily P, polypeptide 9 [Source:ZFIN;Acc:ZDB-GENE-040120-2]
87. CABZ01081294.1 CABZ01081294.1 1 1 1.000 - - - - - - - -
88. hhat ENSDARG00000074428 8 1 - - - - - - - - 1.000 hedgehog acyltransferase [Source:ZFIN;Acc:ZDB-GENE-051118-1]
89. CT737184.1 ENSDARG00000102726 0 1 - - - - - - - - 1.000
90. BX000477.1 BX000477.1 1 1 - - - - - 1.000 - - -
91. pdgfb pdgfb 5 1 - 1.000 - - - - - - -
92. wu:fb63c12 26 1 - 1.000 - - - - - - - wu:fb63c12
93. GPR22_1 GPR22_1 28 1 1.000 - - - - - - - -
94. rc3h2 ENSDARG00000063050 7 1 - - - - - 1.000 - - - ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
95. zgc:123068 ENSDARG00000017489 15 1 - - - - - 1.000 - - - zgc:123068 [Source:ZFIN;Acc:ZDB-GENE-051030-98]
96. si:dkey-34e4.1 ENSDARG00000022085 5 1 1.000 - - - - - - - - si:dkey-34e4.1 [Source:ZFIN;Acc:ZDB-GENE-070705-456]
97. si:dkey-179k24.3 si:dkey-179k24.3 3 1 1.000 - - - - - - - -
98. si:ch211-197g22.1 si:ch211-197g22.1 1 1 - - - - - - - - 1.000
99. si:dkey-220o21.5 si:dkey-220o21.5 24 1 - - - - - 1.000 - - -
100. ftr76 ENSDARG00000076093 1 1 - - - - - 1.000 - - - finTRIM family, member 76 [Source:ZFIN;Acc:ZDB-GENE-090508-15]

There are 1212 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA