Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scn1a

Gene Name Gene ID Reads Annotation
scn1a 8 sodium channel, voltage-gated, type I, alpha, transcript variant X1










Genes with expression patterns similar to scn1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scn1a 8 7 1.000 1.000 1.000 - 1.000 1.000 - 1.000 1.000 sodium channel, voltage-gated, type I, alpha, transcript variant X1
2. slc18a2 ENSDARG00000015110, ENSDARG00000115207 6 2.705 - - - - - 1.000 - 0.705 1.000 solute carrier family 18 (vesicular monoamine transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-080514-1]
3. CNTNAP3 ENSDARG00000067824 25 2.694 0.713 1.000 - - 0.981 - - - - contactin associated protein like 3 [Source:ZFIN;Acc:ZDB-GENE-091113-51]
4. dph2 ENSDARG00000078077 36 2.458 0.838 0.736 - - 0.884 - - - - DPH2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030219-100]
5. si:dkey-98f17.5 ENSDARG00000068863, ENSDARG00000116489 7 2 - 1.000 - - - - - - 1.000 si:dkey-98f17.5 [Source:ZFIN;Acc:ZDB-GENE-060526-354]
6. si:ch211-132b12.7 ENSDARG00000068374 30 2 1.000 - - - - 1.000 - - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
7. BX321870.1 ENSDARG00000098519 9 2 - - - - - 1.000 - - 1.000
8. pwwp2b ENSDARG00000101080 138 2 - 1.000 - - - 1.000 - - - PWWP domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-110930-2]
9. DSEL DSEL 1 2 1.000 - - - - - - - 1.000
10. si:ch211-113a14.19_1 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 15 2 - 1.000 - - - - - - 1.000 si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
11. si:dkey-51d8.6 ENSDARG00000090769 17 2 1.000 1.000 - - - - - - - si:dkey-51d8.6 [Source:ZFIN;Acc:ZDB-GENE-110914-115]
12. si:dkey-4j21.1 17 2 - - - - - 1.000 - - 1.000 si:dkey-4j21.1, transcript variant X2
13. BX000999.2 BX000999.2 2353 2 1.000 1.000 - - - - - - -
14. si:dkey-188i13.8 ENSDARG00000092725 1 2 - - - - - 1.000 - - 1.000 si:dkey-188i13.8 [Source:ZFIN;Acc:ZDB-GENE-090312-93]
15. si:dkey-93m18.5 si:dkey-93m18.5 2 2 - - - - - 1.000 - - 1.000
16. LOXL2 LOXL2 2 2 - 1.000 - - - 1.000 - - -
17. zgc:110789 ENSDARG00000052497, ENSDARG00000111073 171 2 1.000 1.000 - - - - - - - zgc:110789 [Source:ZFIN;Acc:ZDB-GENE-050306-38]
18. CABZ01056274.1 CABZ01056274.1 3 2 - 1.000 - - - - - - 1.000
19. c6ast1 ENSDARG00000069216 8 2 1.000 - - - - 1.000 - - - six-cysteine containing astacin protease 1 [Source:ZFIN;Acc:ZDB-GENE-070621-1]
20. si:dkey-65b12.13 si:dkey-65b12.13 7 2 - 1.000 - - - 1.000 - - -
21. CU861664.1 CU861664.1 53 2 - 1.000 - - - 1.000 - - -
22. KCNN2 ENSDARG00000014939 25 1.983 0.983 1.000 - - - - - - - potassium calcium-activated channel subfamily N member 2 [Source:HGNC Symbol;Acc:HGNC:6291]
23. lonrf1 ENSDARG00000075048 13 1.972 - 1.000 - - 0.972 - - - - LON peptidase N-terminal domain and ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-101021-4]
24. CU672227.1 ENSDARG00000105807 15 1.954 1.000 - - - 0.954 - - - -
25. ggcta ENSDARG00000076406 33 1.893 - - 0.893 - - 1.000 - - - gamma-glutamylcyclotransferase a [Source:ZFIN;Acc:ZDB-GENE-081104-129]
26. fbxo43 ENSDARG00000104186 40 1.889 1.000 0.889 - - - - - - - F-box protein 43 [Source:ZFIN;Acc:ZDB-GENE-040426-1645]
27. c1ql3a ENSDARG00000010350 179 1.875 - - - - 0.875 1.000 - - - complement component 1, q subcomponent-like 3a [Source:ZFIN;Acc:ZDB-GENE-080417-1]
28. ENSDARG00000092910 ENSDARG00000092910 44 1.871 0.871 1.000 - - - - - - -
29. org ENSDARG00000076474 16 1.87 - - - - 0.870 - - - 1.000 oogenesis-related gene [Source:ZFIN;Acc:ZDB-GENE-050208-584]
30. impact ENSDARG00000043288 7 1.861 - - 0.861 - - 1.000 - - - impact RWD domain protein [Source:ZFIN;Acc:ZDB-GENE-040927-10]
31. HIST1H2BA ENSDARG00000116654 10 1.854 1.000 - 0.854 - - - - - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
32. si:dkey-23a23.2 ENSDARG00000023036 123 1.815 0.916 0.899 - - - - - - - si:dkey-23a23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-158]
33. FJX1 ENSDARG00000035873 22 1.811 - - 0.811 - - - - - 1.000 four jointed box 1 [Source:ZFIN;Acc:ZDB-GENE-100422-10]
34. usp47 ENSDARG00000102645 16 1.799 1.000 0.799 - - - - - - - ubiquitin specific peptidase 47 [Source:ZFIN;Acc:ZDB-GENE-070719-7]
35. tmem168b ENSDARG00000062168 17 1.797 - - - - - 1.000 - - 0.797 transmembrane protein 168b [Source:ZFIN;Acc:ZDB-GENE-090406-3]
36. si:dkey-117n7.2 ENSDARG00000093135 40 1.796 - - - - 0.796 1.000 - - - si:dkey-117n7.2 [Source:ZFIN;Acc:ZDB-GENE-060503-49]
37. SNORA81_1 SNORA81_1 8 1.794 - - 0.794 - - 1.000 - - -
38. si:dkey-122c11.4 si:dkey-122c11.4 13 1.761 1.000 - - - - - - - 0.761
39. CU367845.1 CU367845.1 215 1.756 0.756 1.000 - - - - - - -
40. mamdc2b ENSDARG00000073695 26 1.749 1.000 - - - - - - - 0.749 MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
41. SLX1A SLX1A 15 1.742 - 1.000 - - - 0.742 - - -
42. omga ENSDARG00000086573 3 1.742 - 1.000 - - - 0.742 - - - oligodendrocyte myelin glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-091204-203]
43. klhl5 ENSDARG00000062122, ENSDARG00000114563, ENSDARG00000115909 27 1.741 0.741 1.000 - - - - - - - kelch-like family member 5 [Source:ZFIN;Acc:ZDB-GENE-080424-7]
44. ccdc127a 39 1.741 0.741 - - - - 1.000 - - - coiled-coil domain containing 127a, transcript variant X2
45. mapk8a ENSDARG00000031888 44 1.735 0.842 0.893 - - - - - - - mitogen-activated protein kinase 8a [Source:ZFIN;Acc:ZDB-GENE-080218-17]
46. LIX1 ENSDARG00000052154 9 1.723 0.723 - - - - - - - 1.000 limb and CNS expressed 1 [Source:ZFIN;Acc:ZDB-GENE-060526-123]
47. DLGAP2 DLGAP2 36 1.723 0.723 1.000 - - - - - - -
48. gata2b ENSDARG00000009094 16 1.71 - - - - - 1.000 - 0.710 - GATA binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040718-440]
49. MYCT1 MYCT1 64 1.707 - 1.000 - - - 0.707 - - -
50. si:ch211-222k6.1 20 1.687 - 0.714 - - 0.973 - - - - si:ch211-222k6.1, transcript variant X6
51. hpse ENSDARG00000063634, ENSDARG00000112827 35 1.686 0.823 - 0.863 - - - - - - heparanase [Source:ZFIN;Acc:ZDB-GENE-041111-200]
52. rsph4a ENSDARG00000067606 132 1.631 - 0.889 - - - 0.742 - - - radial spoke head component 4A [Source:ZFIN;Acc:ZDB-GENE-030131-7437]
53. C1S_1 C1S_1 11 1.575 - 0.714 0.861 - - - - - -
54. atad5b ENSDARG00000101126, ENSDARG00000111647, ENSDARG00000116936 16 1.544 - 0.705 - - - - - 0.839 - ATPase family, AAA domain containing 5b [Source:ZFIN;Acc:ZDB-GENE-030131-338]
55. stim1b ENSDARG00000061560 146 1.485 0.760 - - - 0.725 - - - - stromal interaction molecule 1b [Source:ZFIN;Acc:ZDB-GENE-060531-4]
56. nr4a2a ENSDARG00000017007 140 1.437 0.723 0.714 - - - - - - - nuclear receptor subfamily 4, group A, member 2a [Source:ZFIN;Acc:ZDB-GENE-990415-184]
57. si:dkey-7n6.2 ENSDARG00000094602, ENSDARG00000111257 56 1 - 1.000 - - - - - - - si:dkey-7n6.2 [Source:ZFIN;Acc:ZDB-GENE-091204-262]
58. zgc:173716 9 1 - 1.000 - - - - - - - zgc:173716
59. spef2 ENSDARG00000098330 59 1 - - - - - 1.000 - - - sperm flagellar 2 [Source:ZFIN;Acc:ZDB-GENE-060526-47]
60. si:ch211-10h8.1 si:ch211-10h8.1 10 1 - 1.000 - - - - - - -
61. fshb ENSDARG00000010841 0 1 - 1.000 - - - - - - - follicle stimulating hormone subunit beta [Source:ZFIN;Acc:ZDB-GENE-040806-1]
62. si:dkey-43f9.1_1 si:dkey-43f9.1_1 3 1 - 1.000 - - - - - - -
63. si:dkey-29p23.3 si:dkey-29p23.3 3 1 1.000 - - - - - - - -
64. fank1 ENSDARG00000039657 9 1 - - - - - 1.000 - - - fibronectin type III and ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130613-3]
65. CR388231.2 ENSDARG00000105547 25 1 - 1.000 - - - - - - - uncharacterized LOC101883418 [Source:NCBI gene;Acc:101883418]
66. gpc5 gpc5 184 1 - 1.000 - - - - - - -
67. eif2b1_1 ENSDARG00000091402, ENSDARG00000114640 36 1 - 1.000 - - - - - - - eukaryotic translation initiation factor 2B, subunit 1 alpha [Source:ZFIN;Acc:ZDB-GENE-040625-25]
68. CU896645.1 CU896645.1 10 1 - 1.000 - - - - - - -
69. si:ch211-15j1.1 ENSDARG00000093177 1 1 1.000 - - - - - - - - si:ch211-15j1.1 [Source:ZFIN;Acc:ZDB-GENE-081031-25]
70. cdcp1a ENSDARG00000058943 70 1 1.000 - - - - - - - - CUB domain containing protein 1a [Source:ZFIN;Acc:ZDB-GENE-050327-55]
71. GPR22_1 GPR22_1 28 1 1.000 - - - - - - - -
72. mpg ENSDARG00000069729 43 1 - - - - - 1.000 - - - N-methylpurine DNA glycosylase [Source:ZFIN;Acc:ZDB-GENE-070410-121]
73. FHDC1 ENSDARG00000074812 2 1 1.000 - - - - - - - - FH2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040826-4]
74. CABZ01084451.1 CABZ01084451.1 0 1 - 1.000 - - - - - - -
75. CDK18 ENSDARG00000012204 5 1 - - - - - - - - 1.000 cyclin dependent kinase 18 [Source:HGNC Symbol;Acc:HGNC:8751]
76. ENDOD1_2 ENDOD1_2 2 1 - - - - - 1.000 - - -
77. col5a3b ENSDARG00000101816 56 1 - - - - - 1.000 - - - collagen, type V, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-110728-4]
78. INPP5A 1 1 - 1.000 - - - - - - - inositol polyphosphate-5-phosphatase A
79. si:ch73-74h11.1 ENSDARG00000062750 158 1 - - - - - 1.000 - - - si:ch73-74h11.1 [Source:ZFIN;Acc:ZDB-GENE-091204-215]
80. TRIM14_14 TRIM14_14 2 1 - - - - - 1.000 - - -
81. ldlrap1b ENSDARG00000039750 2 1 - - - - - - - - 1.000 low density lipoprotein receptor adaptor protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-1012]
82. CR759920.3 CR759920.3 8 1 - 1.000 - - - - - - -
83. fabp10b ENSDARG00000091101 44 1 - - - - - 1.000 - - - fatty acid binding protein 10b, liver basic [Source:ZFIN;Acc:ZDB-GENE-100217-2]
84. zgc:173652_1 4 1 - 1.000 - - - - - - - zgc:173652
85. diras1b ENSDARG00000009372 0 1 - 1.000 - - - - - - - DIRAS family, GTP-binding RAS-like 1b [Source:ZFIN;Acc:ZDB-GENE-070912-620]
86. cx39.4 ENSDARG00000070357 17 1 - - - - - 1.000 - - - connexin 39.4 [Source:ZFIN;Acc:ZDB-GENE-050616-6]
87. si:ch211-63o20.7 ENSDARG00000042000 93 1 1.000 - - - - - - - - si:ch211-63o20.7 [Source:ZFIN;Acc:ZDB-GENE-041001-194]
88. c6ast4 ENSDARG00000052578 6 1 1.000 - - - - - - - - six-cysteine containing astacin protease 4 [Source:ZFIN;Acc:ZDB-GENE-050626-100]
89. cog1 ENSDARG00000105131 35 1 1.000 - - - - - - - - component of oligomeric golgi complex 1 [Source:ZFIN;Acc:ZDB-GENE-050302-128]
90. lifra ENSDARG00000098857 11 1 - - - - - - - - 1.000 leukemia inhibitory factor receptor alpha a [Source:ZFIN;Acc:ZDB-GENE-050327-16]
91. C17H8orf74 C17H8orf74 4 1 - - - - - - - - 1.000
92. cyp27a1.4 ENSDARG00000055159 47 1 - 1.000 - - - - - - - cytochrome P450, family 27, subfamily A, polypeptide 1, gene 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1060]
93. BX465203.1 ENSDARG00000113985 8 1 - - - - - 1.000 - - -
94. zgc:162724 zgc:162724 9 1 - - - - - - - - 1.000
95. si:dkeyp-87e3.3 si:dkeyp-87e3.3 68 1 1.000 - - - - - - - -
96. zgc:174698 ENSDARG00000075731, ENSDARG00000077266, ENSDARG00000098236 24 1 - 1.000 - - - - - - - zgc:174698 [Source:ZFIN;Acc:ZDB-GENE-080204-74]
97. apba1a ENSDARG00000103848 0 1 - - - - - - - - 1.000 amyloid beta (A4) precursor protein-binding, family A, member 1a [Source:ZFIN;Acc:ZDB-GENE-060526-175]
98. BX465848.2 ENSDARG00000116920 6 1 - 1.000 - - - - - - -
99. btbd3a ENSDARG00000005544 595 1 1.000 - - - - - - - - BTB (POZ) domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-090312-7]
100. si:dkey-95p16.1 ENSDARG00000092452 3 1 - 1.000 - - - - - - - si:dkey-95p16.1 [Source:ZFIN;Acc:ZDB-GENE-081104-443]

There are 1212 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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