Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scdb

Gene Name Gene ID Reads Annotation
scdb ENSDARG00000030265 271 stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]










Genes with expression patterns similar to scdb

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scdb ENSDARG00000030265 271 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]
2. syt2a ENSDARG00000025206 681 3.373 0.834 0.777 - - - 0.833 0.929 - - synaptotagmin IIa [Source:ZFIN;Acc:ZDB-GENE-060503-315]
3. vsnl1a ENSDARG00000023228 1584 3.271 0.725 0.916 - - - 0.929 0.701 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
4. nin ENSDARG00000060298 1558 3.18 0.732 - - - - 0.769 0.789 0.890 - ninein (GSK3B interacting protein) [Source:ZFIN;Acc:ZDB-GENE-070725-1]
5. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 3.141 0.891 0.770 - - - 0.712 - 0.768 - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
6. pcsk1nl ENSDARG00000076170 1232 2.741 0.845 0.941 - - - 0.955 - - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
7. scn8aa ENSDARG00000005775 792 2.721 0.897 0.960 - - - 0.864 - - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
8. syt11a ENSDARG00000057913 1145 2.721 0.868 0.915 - - - 0.938 - - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
9. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 2.709 0.930 0.927 - - - 0.852 - - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
10. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 2.674 0.945 0.884 - - - 0.845 - - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
11. atp2b3b ENSDARG00000023445 1424 2.636 0.836 0.863 - - - 0.937 - - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
12. rtn1b ENSDARG00000021143 1682 2.603 0.885 0.797 - - - 0.921 - - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
13. TUBB8P7_1 TUBB8P7_1 2722 2.599 0.885 0.845 - - - 0.869 - - -
14. stmn2a ENSDARG00000033234 2272 2.571 0.866 0.760 - - - 0.945 - - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
15. nadl1.1 1200 2.557 0.819 0.862 - - - 0.876 - - - neural adhesion molecule L1.1, transcript variant X1
16. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.554 0.847 0.803 - - - 0.904 - - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
17. B4GALNT1 B4GALNT1 352 2.523 0.783 0.875 - - - 0.865 - - -
18. stx1b ENSDARG00000000503 2724 2.521 0.796 0.908 - - - 0.817 - - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
19. TUSC5 TUSC5 1436 2.515 0.750 0.854 - - - 0.911 - - -
20. si:dkey-245p14.4 ENSDARG00000070320 418 2.51 0.814 0.859 - - - 0.837 - - - si:dkey-245p14.4 [Source:ZFIN;Acc:ZDB-GENE-061207-63]
21. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.502 0.764 0.875 - - - 0.863 - - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
22. kif5aa ENSDARG00000098936 2428 2.485 0.771 0.783 - - - 0.931 - - - kinesin family member 5A, a [Source:ZFIN;Acc:ZDB-GENE-070912-141]
23. stmn2b ENSDARG00000070537 1586 2.481 0.828 0.733 - - - 0.920 - - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
24. TUBB8P7 TUBB8P7 1353 2.478 0.789 0.925 - - - 0.764 - - -
25. adam23a ENSDARG00000062323 580 2.474 0.819 0.835 - - - 0.820 - - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
26. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.469 0.783 0.730 - - - 0.956 - - -
27. atp1a3a ENSDARG00000018259 5393 2.468 0.836 0.883 - - - 0.749 - - - ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
28. cacna2d3 ENSDARG00000078760 211 2.46 0.779 0.843 - - - 0.838 - - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
29. lbx1b ENSDARG00000018611 399 2.457 0.856 0.877 - 0.724 - - - - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
30. tcap ENSDARG00000007344 276 2.457 - 0.929 - - - 0.712 0.816 - - titin-cap (telethonin) [Source:ZFIN;Acc:ZDB-GENE-070501-5]
31. gap43 ENSDARG00000099744 4114 2.455 0.813 0.719 - - - 0.923 - - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
32. si:ch211-152f6.6 si:ch211-152f6.6 278 2.439 0.874 0.812 - - - - - 0.753 -
33. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 2.42 - 0.840 - - - 0.812 - 0.768 - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
34. slc1a1 ENSDARG00000020212 104 2.418 0.855 - - - - 0.837 - 0.726 - solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:ZFIN;Acc:ZDB-GENE-040718-414]
35. slc1a3a ENSDARG00000104431 9888 2.412 0.777 0.702 - - - 0.933 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
36. SV2B SV2B 208 2.406 0.781 0.770 - - - 0.855 - - -
37. snap25a ENSDARG00000020609 4537 2.404 0.754 0.764 - - - 0.886 - - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
38. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 2.391 0.813 0.847 - - - 0.731 - - - zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
39. rbfox3 rbfox3 1443 2.387 0.710 0.882 - - - 0.795 - - -
40. slc1a2b ENSDARG00000102453 3136 2.385 0.760 0.747 - - - 0.878 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
41. ksr2 ENSDARG00000094526 134 2.374 - 0.837 - - - 0.816 - 0.721 - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
42. hs3st3l ENSDARG00000059903 184 2.365 0.797 0.726 - - - 0.842 - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [Source:ZFIN;Acc:ZDB-GENE-070202-6]
43. scrt2 ENSDARG00000056175 4331 2.343 0.731 0.725 - - - 0.887 - - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
44. amph ENSDARG00000007663 599 2.326 0.758 0.770 - - - 0.798 - - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
45. arhgap11a ENSDARG00000100019 1642 2.317 - - - - - 0.768 0.829 0.720 - Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]
46. ablim1a ENSDARG00000060149 228 2.306 0.762 - - - - 0.761 - 0.783 - actin binding LIM protein 1a [Source:ZFIN;Acc:ZDB-GENE-080219-41]
47. nkx1.2lb ENSDARG00000099427 220 2.297 0.805 0.721 - - - 0.771 - - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
48. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.288 0.783 - - - - 0.786 - 0.719 - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
49. nrxn2a ENSDARG00000061454 291 2.287 0.825 0.721 - - - 0.741 - - - neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
50. MAP1B ENSDARG00000060434, ENSDARG00000113782 1983 2.264 0.774 - - - - 0.750 - 0.740 - microtubule-associated protein 1B [Source:ZFIN;Acc:ZDB-GENE-130530-690]
51. runx3 ENSDARG00000052826 247 2.26 0.750 0.737 - - - 0.773 - - - runt-related transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-000605-2]
52. SV2A ENSDARG00000059945 1278 2.256 0.742 - - - - - - 0.808 0.706 synaptic vesicle glycoprotein 2A [Source:ZFIN;Acc:ZDB-GENE-131001-1]
53. ARHGAP22 ENSDARG00000076434 1406 2.166 - 0.703 - - - 0.746 - - 0.717 Rho GTPase activating protein 22 [Source:HGNC Symbol;Acc:HGNC:30320]
54. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 1.848 0.944 - - - - 0.904 - - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
55. syt9a ENSDARG00000003994 298 1.829 0.922 - - - - 0.907 - - - synaptotagmin IXa [Source:ZFIN;Acc:ZDB-GENE-031002-18]
56. ppp3ca ENSDARG00000004988 615 1.824 0.879 - - - - 0.945 - - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
57. st6gal1 ENSDARG00000044514 142 1.819 0.940 - - - - 0.879 - - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
58. sncgb ENSDARG00000109715 1014 1.794 0.888 - - - - 0.906 - - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
59. pcdh1a ENSDARG00000062720 276 1.793 - - - - - 0.920 0.873 - - protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]
60. dpysl5a ENSDARG00000011141 1827 1.793 - 0.835 - - - 0.958 - - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
61. SNAP91 ENSDARG00000098809 556 1.792 - 0.922 - - - 0.870 - - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
62. olfm1b ENSDARG00000014053 1392 1.792 0.861 - - - - 0.931 - - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
63. nrn1a ENSDARG00000071860 1311 1.789 0.876 - - - - 0.913 - - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
64. kcnip3b ENSDARG00000017880, ENSDARG00000109763 105 1.785 0.927 - - - - 0.858 - - - Kv channel interacting protein 3b, calsenilin [Source:ZFIN;Acc:ZDB-GENE-040426-1752]
65. slc32a1 ENSDARG00000059775 1092 1.781 - 0.883 - - - 0.898 - - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
66. TUBB2A TUBB2A 142 1.779 0.957 - - - - 0.822 - - -
67. MAP1A MAP1A 847 1.776 0.867 - - - - 0.909 - - -
68. mdkb ENSDARG00000020708 5393 1.766 0.830 - - - - 0.936 - - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
69. KCNAB2 KCNAB2 129 1.75 0.947 - - - - 0.803 - - -
70. mapk12b ENSDARG00000006409 2246 1.748 - 0.850 - - - 0.898 - - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
71. tmem178 ENSDARG00000020758 77 1.746 0.851 - - - - 0.895 - - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
72. cnrip1a ENSDARG00000091683 1491 1.745 - 0.873 - - - 0.872 - - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
73. fez1 ENSDARG00000023174 701 1.744 0.955 - - - - 0.789 - - - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
74. INA INA 950 1.743 0.911 - - - - 0.832 - - -
75. nova1 ENSDARG00000020178 4129 1.743 - 0.816 - - - 0.927 - - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
76. mllt11 ENSDARG00000071026 2518 1.743 0.836 - - - - 0.907 - - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
77. si:ch73-21g5.7 ENSDARG00000093156 9412 1.74 - 0.834 - - - 0.906 - - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
78. phyhipla ENSDARG00000003998, ENSDARG00000115785 262 1.731 0.796 - - - - 0.935 - - - phytanoyl-CoA 2-hydroxylase interacting protein-like a [Source:ZFIN;Acc:ZDB-GENE-061215-64]
79. zic4 ENSDARG00000031307 1228 1.726 - 0.813 - - - 0.913 - - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
80. rgs7 rgs7 208 1.726 0.914 0.812 - - - - - - -
81. adcyap1b ENSDARG00000027740 1539 1.721 0.795 - - - - 0.926 - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
82. stxbp1a ENSDARG00000001994 5154 1.719 - 0.803 - - - 0.916 - - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
83. SKOR2 SKOR2 1041 1.719 0.873 0.846 - - - - - - -
84. aplp1 ENSDARG00000098368 2317 1.717 0.803 - - - - 0.914 - - - amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
85. syt11b ENSDARG00000056105 578 1.714 0.809 - - - - - 0.905 - - synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
86. ZNF337_18 ZNF337_18 152 1.711 0.998 - - - - 0.713 - - -
87. scg2b ENSDARG00000038574 345 1.708 0.740 - - - - 0.968 - - - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]
88. MAP6 MAP6 643 1.708 - 0.891 - - - 0.817 - - -
89. stmn1b ENSDARG00000033655 9491 1.705 0.776 - - - - 0.929 - - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
90. cadm3 ENSDARG00000057013 1545 1.7 0.805 - - - - 0.895 - - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
91. nptx1l ENSDARG00000074671 569 1.695 - 0.799 - - - 0.896 - - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
92. MAPK8IP1_1 MAPK8IP1_1 186 1.695 0.829 - - - - 0.866 - - -
93. TUSC5_1 TUSC5_1 320 1.694 - 0.772 - - - 0.922 - - -
94. cntn1b ENSDARG00000045685 159 1.694 0.893 - - - - 0.801 - - - contactin 1b [Source:ZFIN;Acc:ZDB-GENE-041210-236]
95. adarb1a ENSDARG00000041609 476 1.686 - - - - - 0.880 - 0.806 - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
96. PMFBP1 ENSDARG00000101917 292 1.685 - 0.773 - - - 0.912 - - - polyamine modulated factor 1 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-131127-619]
97. cers6 ENSDARG00000053583 247 1.683 - 0.875 - - - 0.808 - - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
98. gabrb3 ENSDARG00000023771, ENSDARG00000114822 180 1.681 0.933 - - - - 0.748 - - - gamma-aminobutyric acid (GABA) A receptor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-101102-2]
99. tnika ENSDARG00000056218 728 1.679 - 0.821 - - - 0.858 - - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
100. lrrc4.1 ENSDARG00000069402 323 1.678 - 0.823 - - - 0.855 - - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]

There are 2081 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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