Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for scara3

Gene Name Gene ID Reads Annotation
scara3 ENSDARG00000008060 169 scavenger receptor class A, member 3 [Source:ZFIN;Acc:ZDB-GENE-041014-317]










Genes with expression patterns similar to scara3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scara3 ENSDARG00000008060 169 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 scavenger receptor class A, member 3 [Source:ZFIN;Acc:ZDB-GENE-041014-317]
2. zgc:175280 ENSDARG00000099111 71 2.495 - 1.000 - - 0.732 0.763 - - - zgc:175280 [Source:ZFIN;Acc:ZDB-GENE-080219-39]
3. CU928220.1 CU928220.1 146 1.907 - 1.000 - - - - 0.907 - -
4. matn3a ENSDARG00000069245 2410 1.869 - 1.000 - - - 0.869 - - - matrilin 3a [Source:ZFIN;Acc:ZDB-GENE-040822-21]
5. snx1b ENSDARG00000103529 4 1.868 - 1.000 - - 0.868 - - - - sorting nexin 1b [Source:ZFIN;Acc:ZDB-GENE-050913-82]
6. ftr56 ENSDARG00000030954 23 1.8 - 1.000 0.800 - - - - - - finTRIM family, member 56 [Source:ZFIN;Acc:ZDB-GENE-030131-2801]
7. heyl ENSDARG00000055798, ENSDARG00000112770 76 1.796 - 1.000 - - 0.796 - - - - hes-related family bHLH transcription factor with YRPW motif-like [Source:ZFIN;Acc:ZDB-GENE-030131-7074]
8. CR753817.1 ENSDARG00000110927 26 1.779 - 1.000 - - - - 0.779 - -
9. clcn1a ENSDARG00000062084 120 1.773 - 1.000 - - - - 0.773 - - chloride channel, voltage-sensitive 1a [Source:ZFIN;Acc:ZDB-GENE-060503-333]
10. si:dkey-220k22.3 ENSDARG00000094693 166 1.747 - 1.000 - 0.747 - - - - - si:dkey-220k22.3 [Source:ZFIN;Acc:ZDB-GENE-060526-257]
11. wisp3 ENSDARG00000071048 15 1.746 - - 0.924 - - - 0.822 - - WNT1 inducible signaling pathway protein 3 [Source:ZFIN;Acc:ZDB-GENE-041001-86]
12. tnni3k ENSDARG00000086933 37 1.744 - 1.000 - - - - 0.744 - - TNNI3 interacting kinase [Source:ZFIN;Acc:ZDB-GENE-081104-399]
13. trim35-3_1 ENSDARG00000052255 6 1.74 - 1.000 - - - - 0.740 - - tripartite motif containing 35-3 [Source:ZFIN;Acc:ZDB-GENE-070912-56]
14. sema3bl ENSDARG00000007560, ENSDARG00000110211 30 1.737 0.879 - - - - - 0.858 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl [Source:ZFIN;Acc:ZDB-GENE-030131-2956]
15. PEG3_19 PEG3_19 29 1.72 - 1.000 0.720 - - - - - -
16. si:dkey-222b8.4 ENSDARG00000057227 13 1.715 0.779 - - - 0.936 - - - - si:dkey-222b8.4 [Source:ZFIN;Acc:ZDB-GENE-060503-438]
17. rnf217 ENSDARG00000060944 10 1.713 - 1.000 0.713 - - - - - - ring finger protein 217 [Source:ZFIN;Acc:ZDB-GENE-060503-400]
18. ntla ntla 926 1.708 - - - - - 0.909 0.799 - -
19. pitx3 ENSDARG00000070069 363 1.704 0.908 - - - - 0.796 - - - paired-like homeodomain 3 [Source:ZFIN;Acc:ZDB-GENE-041229-4]
20. si:dkey-188k17.2 7 1.703 - 1.000 - - - 0.703 - - - si:dkey-188k17.2
21. ucmab ENSDARG00000005485 1808 1.69 0.826 - - - - 0.864 - - - upper zone of growth plate and cartilage matrix associated b [Source:ZFIN;Acc:ZDB-GENE-040426-2368]
22. smc1a ENSDARG00000055754 62 1.647 - - 0.934 - - - 0.713 - - structural maintenance of chromosomes 1A [Source:ZFIN;Acc:ZDB-GENE-090506-9]
23. dmrt1 ENSDARG00000007349 16 1.645 - - 0.825 - 0.820 - - - - doublesex and mab-3 related transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-050511-1]
24. C14orf80 C14orf80 20 1.641 - 0.747 0.894 - - - - - -
25. hhip ENSDARG00000060397, ENSDARG00000111482, ENSDARG00000111668 3025 1.626 - - - - - 0.812 0.814 - - hedgehog interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4827]
26. zgc:158654 19 1.625 0.779 - 0.846 - - - - - - zgc:158654, transcript variant X1
27. CU207301.10 CU207301.10 67 1.623 - - 0.819 - - 0.804 - - -
28. SLC26A6 ENSDARG00000055835, ENSDARG00000097292 62 1.62 0.779 - - - - - 0.841 - - solute carrier family 26, member 6 [Source:ZFIN;Acc:ZDB-GENE-081105-83]
29. BX842614.2 BX842614.2 799 1.615 - - - - - 0.809 0.806 - -
30. si:ch73-338a16.3 ENSDARG00000101159 18 1.611 - 0.834 0.777 - - - - - - si:ch73-338a16.3 [Source:ZFIN;Acc:ZDB-GENE-120215-227]
31. sostdc1b ENSDARG00000056021, ENSDARG00000114829 33 1.61 0.779 - - - - - 0.831 - - sclerostin domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060503-653]
32. COLGALT2 ENSDARG00000014670 63 1.606 - - - - - 0.838 0.768 - - collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
33. chad ENSDARG00000045071 903 1.595 - - - - - 0.859 0.736 - - chondroadherin [Source:ZFIN;Acc:ZDB-GENE-040426-1130]
34. CABZ01079764.1 CABZ01079764.1 12103 1.593 - - - - - 0.829 0.764 - -
35. mmp23bb ENSDARG00000009825 133 1.589 0.779 - - - - 0.810 - - - matrix metallopeptidase 23bb [Source:ZFIN;Acc:ZDB-GENE-050417-448]
36. fam46bb 601 1.583 - - - - - 0.813 0.770 - - family with sequence similarity 46, member Bb
37. gpx3 ENSDARG00000043342 101 1.575 0.778 - - - 0.797 - - - - glutathione peroxidase 3 [Source:ZFIN;Acc:ZDB-GENE-070222-3]
38. tppp3 ENSDARG00000030463 992 1.57 - - - - - 0.839 0.731 - - tubulin polymerization-promoting protein family member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1909]
39. sncga ENSDARG00000034423, ENSDARG00000112260 5469 1.563 - - - - - 0.783 0.780 - - synuclein, gamma a [Source:ZFIN;Acc:ZDB-GENE-050417-18]
40. gpr155b ENSDARG00000071086 54 1.555 - 0.806 - - 0.749 - - - - G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
41. plcl1 ENSDARG00000067676 2457 1.551 - - - - - 0.793 0.758 - - phospholipase C like 1 [Source:ZFIN;Acc:ZDB-GENE-090313-194]
42. epsti1 ENSDARG00000094578 33 1.547 - - 0.807 - - - 0.740 - - epithelial stromal interaction 1 [Source:ZFIN;Acc:ZDB-GENE-081104-172]
43. sox9a ENSDARG00000003293 812 1.532 - - - - - 0.719 0.813 - - SRY (sex determining region Y)-box 9a [Source:ZFIN;Acc:ZDB-GENE-001103-1]
44. plod1a ENSDARG00000059746 3364 1.529 - - - - - 0.773 0.756 - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3165]
45. nkx3.2 ENSDARG00000037639 575 1.522 - - - - - 0.782 0.740 - - NK3 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-030127-1]
46. notum2 ENSDARG00000088411 823 1.518 - - - - - 0.700 0.818 - - notum pectinacetylesterase 2 [Source:ZFIN;Acc:ZDB-GENE-120215-77]
47. aqp4 ENSDARG00000010565 624 1.51 - - - - - 0.779 0.731 - - aquaporin 4 [Source:ZFIN;Acc:ZDB-GENE-040724-152]
48. ctgfa ENSDARG00000042934, ENSDARG00000112741 2123 1.506 0.734 - - - - 0.772 - - - connective tissue growth factor a [Source:ZFIN;Acc:ZDB-GENE-030131-102]
49. ntd5 ENSDARG00000040944 4988 1.501 - - - - - 0.786 0.715 - - ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
50. si:dkey-92j12.6 211 1.493 - 0.747 - - - - 0.746 - - si:dkey-92j12.6
51. si:dkeyp-118a3.2 ENSDARG00000086957 2106 1.493 - - - - - 0.767 0.726 - - si:dkeyp-118a3.2 [Source:ZFIN;Acc:ZDB-GENE-060810-149]
52. PAQR4 PAQR4 2150 1.488 - - - - - 0.784 0.704 - -
53. IGSF10 ENSDARG00000077497 317 1.485 - - - - - 0.726 0.759 - - immunoglobulin superfamily, member 10 [Source:ZFIN;Acc:ZDB-GENE-130530-827]
54. guk1b ENSDARG00000005776 23 1.482 0.779 - - - - 0.703 - - - guanylate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-020916-1]
55. CR792456.1 CR792456.1 783 1.482 - - - - - 0.717 0.765 - -
56. mkxa ENSDARG00000075450, ENSDARG00000114299 233 1.473 - - - - - 0.718 0.755 - - mohawk homeobox a [Source:ZFIN;Acc:ZDB-GENE-080513-1]
57. cthrc1a ENSDARG00000087198 1001 1.471 - - - - - 0.756 0.715 - - collagen triple helix repeat containing 1a [Source:ZFIN;Acc:ZDB-GENE-040808-22]
58. mibp ENSDARG00000101362 37 1.461 0.725 - - - 0.736 - - - - muscle-specific beta 1 integrin binding protein [Source:ZFIN;Acc:ZDB-GENE-030404-1]
59. si:dkey-14d8.6 ENSDARG00000045835 72 1.456 - 0.747 - - - - 0.709 - - si:dkey-14d8.6 [Source:ZFIN;Acc:ZDB-GENE-041210-124]
60. STRIP2 ENSDARG00000059003 394 1.454 - - - - - 0.717 0.737 - - striatin interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-120328-1]
61. CR352249.1 ENSDARG00000114701 857 1.454 - - - - - 0.711 0.743 - - solute carrier family 38, member 8b [Source:NCBI gene;Acc:795255]
62. eng1a eng1a 484 1.409 - - - - - 0.709 0.700 - -
63. CABZ01079979.1 CABZ01079979.1 1 1 - 1.000 - - - - - - -
64. GPR82 GPR82 127 1 - 1.000 - - - - - - -
65. kcnn1a ENSDARG00000091306 95 1 - 1.000 - - - - - - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a [Source:ZFIN;Acc:ZDB-GENE-070912-703]
66. GABRR1 ENSDARG00000043902 71 1 - 1.000 - - - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
67. si:ch211-162i8.2 ENSDARG00000096041 4 1 - 1.000 - - - - - - - si:ch211-162i8.2 [Source:ZFIN;Acc:ZDB-GENE-110913-56]
68. ankar ENSDARG00000000516 3 1 - 1.000 - - - - - - - ankyrin and armadillo repeat containing [Source:ZFIN;Acc:ZDB-GENE-030616-533]
69. si:ch211-281p14.2 22 1 - 1.000 - - - - - - - si:ch211-281p14.2, transcript variant X2
70. CU694952.2 CU694952.2 3 1 - 1.000 - - - - - - -
71. EDN3 14 1 - 1.000 - - - - - - - endothelin 3
72. DBNDD1 DBNDD1 43 1 - 1.000 - - - - - - -
73. cabp2a ENSDARG00000052016 19 1 - 1.000 - - - - - - - calcium binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-050913-25]
74. ZNF337_23 ZNF337_23 39 1 - 1.000 - - - - - - -
75. HIST1H4J_2 HIST1H4J_2 12 1 - 1.000 - - - - - - -
76. syndig1l ENSDARG00000042390, ENSDARG00000113400 17 1 - 1.000 - - - - - - - synapse differentiation inducing 1-like [Source:ZFIN;Acc:ZDB-GENE-041001-116]
77. prph2a ENSDARG00000038018 2 1 - 1.000 - - - - - - - peripherin 2a (retinal degeneration, slow) [Source:ZFIN;Acc:ZDB-GENE-000616-8]
78. il1rapl1b ENSDARG00000104853 52 1 - 1.000 - - - - - - - interleukin 1 receptor accessory protein-like 1b [Source:ZFIN;Acc:ZDB-GENE-090109-2]
79. C12H17orf70 C12H17orf70 25 1 - 1.000 - - - - - - -
80. si:ch211-262h13.4 si:ch211-262h13.4 3 1 - 1.000 - - - - - - -
81. prrt1 ENSDARG00000062208 368 1 - 1.000 - - - - - - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
82. TNFRSF14_1 TNFRSF14_1 165 1 - 1.000 - - - - - - -
83. mlc1 ENSDARG00000063026 29 1 - 1.000 - - - - - - - megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:ZFIN;Acc:ZDB-GENE-050419-145]
84. gata1b ENSDARG00000059130 151 1 - 1.000 - - - - - - - GATA binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-081104-43]
85. derl3 ENSDARG00000033871, ENSDARG00000114961 36 1 - 1.000 - - - - - - - derlin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1324]
86. PNPLA2 ENSDARG00000089390 0 1 - 1.000 - - - - - - - patatin-like phospholipase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120913-3]
87. loxhd1a ENSDARG00000094738 7 1 - 1.000 - - - - - - - lipoxygenase homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-091112-20]
88. slc17a8 ENSDARG00000057728, ENSDARG00000109791 8 1 - 1.000 - - - - - - - solute carrier family 17 (vesicular glutamate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-416]
89. st6galnac1.1 ENSDARG00000043814 95 1 - 1.000 - - - - - - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-041014-160]
90. si:dkey-79f11.1 si:dkey-79f11.1 91 1 - 1.000 - - - - - - -
91. BX571853.2 ENSDARG00000110441 21 1 - 1.000 - - - - - - -
92. mir21-2 18 1 - 1.000 - - - - - - - microRNA 21-2
93. ROCK2_1 ROCK2_1 47 1 - 1.000 - - - - - - -
94. ATXN1 ATXN1 12 1 - 1.000 - - - - - - -
95. zgc:171482 ENSDARG00000074415 0 1 - 1.000 - - - - - - - zgc:171482 [Source:ZFIN;Acc:ZDB-GENE-080204-84]
96. CABZ01088365.1 CABZ01088365.1 66 1 - 1.000 - - - - - - -
97. C1GALT1_1 C1GALT1_1 1 1 - 1.000 - - - - - - -
98. BRPF1 ENSDARG00000103665 10 1 - 1.000 - - - - - - - bromodomain and PHD finger containing, 1 [Source:ZFIN;Acc:ZDB-GENE-040426-731]
99. si:ch1073-170o4.1 ENSDARG00000092780 18 1 - 1.000 - - - - - - - si:ch1073-170o4.1 [Source:ZFIN;Acc:ZDB-GENE-030131-7012]
100. si:dkey-70b24.7 si:dkey-70b24.7 5 1 - 1.000 - - - - - - -

There are 937 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA