Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scaf11

Gene Name Gene ID Reads Annotation
scaf11 ENSDARG00000045885 3531 SR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]










Genes with expression patterns similar to scaf11

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scaf11 ENSDARG00000045885 3531 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]
2. mbd3a ENSDARG00000061774 4047 2.571 - - - 0.711 0.963 - - 0.897 - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
3. rhot1a ENSDARG00000099996 2059 1.95 - - - - 0.979 - - - 0.971 ras homolog family member T1a [Source:ZFIN;Acc:ZDB-GENE-030131-5354]
4. si:dkey-193b15.6 si:dkey-193b15.6 1340 1.944 - - - - - - - 0.973 0.971
5. srebf2 ENSDARG00000063438 1982 1.943 - - - - - - - 0.962 0.981 sterol regulatory element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-070410-8]
6. atf6 ENSDARG00000012656 3873 1.929 - - - - - - 0.956 - 0.973 activating transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-041014-328]
7. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 1.928 - - - - - - 0.949 - 0.979 spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
8. pou2f1b ENSDARG00000007996 2172 1.926 - - - - 0.972 - - - 0.954 POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
9. agk ENSDARG00000009837, ENSDARG00000113514 811 1.924 - - - - - - 0.944 0.980 - acylglycerol kinase [Source:ZFIN;Acc:ZDB-GENE-030131-6202]
10. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 1.92 - - - - - - 0.968 - 0.952 ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
11. yy1b ENSDARG00000027978 2669 1.918 - - - - - - 0.937 0.981 - YY1 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2127]
12. itpkcb ENSDARG00000067741 2370 1.918 - - - - - - 0.947 - 0.971 inositol-trisphosphate 3-kinase Cb [Source:ZFIN;Acc:ZDB-GENE-080225-27]
13. safb ENSDARG00000020467 5608 1.905 - - - - 0.957 - 0.948 - - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
14. RBBP8NL RBBP8NL 813 1.905 - - - - - - 0.953 0.952 -
15. dyrk1b ENSDARG00000070187 2777 1.904 - - - - - - 0.940 0.964 - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B [Source:ZFIN;Acc:ZDB-GENE-060503-499]
16. gigfy2 3194 1.903 - - - - - - 0.929 0.974 - GRB10 interacting GYF protein 2, transcript variant X1
17. pes ENSDARG00000018902 3286 1.903 - - - - - - 0.952 0.951 - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
18. COL13A1 1565 1.902 - - - - - - 0.945 0.957 - collagen, type XIII, alpha 1, transcript variant X1
19. ef1 1343 1.899 - - - - - - 0.922 - 0.977 E74-like factor 1 (ets domain transcription factor), transcript variant X4
20. cpla2 cpla2 1031 1.896 - - - - - - - 0.923 0.973
21. dkk1b ENSDARG00000045219, ENSDARG00000112504 1047 1.895 - - - - - - 0.927 - 0.968 dickkopf WNT signaling pathway inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-990708-5]
22. atp6v1f ENSDARG00000045543 3445 1.894 - - - - - - - 0.927 0.967 ATPase H+ transporting V1 subunit F [Source:ZFIN;Acc:ZDB-GENE-040718-259]
23. uba5 ENSDARG00000063588 1260 1.882 - - - - - - 0.946 0.936 - ubiquitin-like modifier activating enzyme 5 [Source:ZFIN;Acc:ZDB-GENE-031112-2]
24. ARHGAP23 ARHGAP23 3946 1.882 - - - - 0.973 - 0.909 - -
25. gorasp2 ENSDARG00000015126 3923 1.878 - - - - 0.967 - - - 0.911 golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
26. abl1 ENSDARG00000035187 3553 1.876 - - - - - - 0.972 0.904 - c-abl oncogene 1, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-100812-9]
27. slit1a ENSDARG00000044954 3810 1.859 - - - - - - - 0.925 0.934 slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
28. si:ch211-22i13.2 ENSDARG00000043485 4719 1.858 - - - - - - 0.908 - 0.950 si:ch211-22i13.2 [Source:ZFIN;Acc:ZDB-GENE-041014-143]
29. psma3 ENSDARG00000086618 6200 1.857 - - - - 0.955 - 0.902 - - proteasome subunit alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050913-120]
30. zgc:92380 ENSDARG00000041339 1867 1.842 - - - - - - 0.938 0.904 - zgc:92380 [Source:ZFIN;Acc:ZDB-GENE-040801-221]
31. lamp1 1017 1.841 - - - - - 0.871 - 0.970 - lysosomal-associated membrane protein 1
32. klhdc4 ENSDARG00000100206, ENSDARG00000113735 2362 1.826 0.843 - - - - - - - 0.983 kelch domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-2057]
33. wipi1 ENSDARG00000040657 2732 1.825 - - - - - - 0.967 - 0.858 WD repeat domain, phosphoinositide interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1404]
34. tpd52l2b ENSDARG00000013655 9460 1.823 - - - - - - 0.949 - 0.874 tumor protein D52-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-822]
35. akap12b ENSDARG00000055678, ENSDARG00000110544 8317 1.814 - - - - - - 0.957 - 0.857 A kinase (PRKA) anchor protein 12b [Source:ZFIN;Acc:ZDB-GENE-030131-9753]
36. slc43a1a ENSDARG00000037393, ENSDARG00000113118 5797 1.813 - - - - - - 0.957 0.856 - solute carrier family 43 (amino acid system L transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6327]
37. ppm1g ENSDARG00000075559 6516 1.809 - - - - 0.929 - 0.880 - - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
38. lepre1 lepre1 5346 1.801 - - - - - - - 0.927 0.874
39. prelid1b ENSDARG00000044169 501 1.798 - - - - - 0.816 - 0.982 - PRELI domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050522-169]
40. srsf2a ENSDARG00000057484 25721 1.797 - - - - 0.897 - 0.900 - - serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
41. serbp1a ENSDARG00000074242 10818 1.777 - - - - 0.910 - 0.867 - - SERPINE1 mRNA binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7389]
42. zgc:63587 ENSDARG00000017140 8399 1.776 - - - - - - 0.931 - 0.845 zgc:63587 [Source:ZFIN;Acc:ZDB-GENE-040426-1175]
43. kansl3 ENSDARG00000029556 2487 1.772 - - - - - 0.829 0.943 - - KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
44. nr2f6b ENSDARG00000003165 5855 1.767 - - - - 0.846 - - 0.921 - nuclear receptor subfamily 2, group F, member 6b [Source:ZFIN;Acc:ZDB-GENE-040426-2351]
45. asphd2 ENSDARG00000059629 1005 1.764 - - - - - 0.786 - - 0.978 aspartate beta-hydroxylase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-142]
46. bcap31 ENSDARG00000044972 8708 1.76 - - - - 0.902 - - - 0.858 B cell receptor associated protein 31 [Source:ZFIN;Acc:ZDB-GENE-030616-63]
47. myl12.2 ENSDARG00000025326 1887 1.75 - 0.782 - - - - - - 0.968 myosin, light chain 12, genome duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9028]
48. slc1a5 ENSDARG00000099186 7580 1.748 - - - - - - - 0.925 0.823 solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
49. ADCY3 ADCY3 537 1.745 - - - - - 0.795 - 0.950 -
50. ppig ENSDARG00000044431 3427 1.739 - 0.772 - - - - - - 0.967 peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
51. cpsf3 ENSDARG00000027649 6897 1.736 - - - - - - - 0.859 0.877 cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
52. copb1 ENSDARG00000056557, ENSDARG00000116045 7395 1.734 - - - - - - 0.853 0.881 - coatomer protein complex, subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030219-38]
53. frem1a ENSDARG00000069473 1847 1.732 - - - - - - 0.906 0.826 - Fras1 related extracellular matrix 1a [Source:ZFIN;Acc:ZDB-GENE-081119-1]
54. nmt1a ENSDARG00000052966 5918 1.727 - - - - - - 0.921 0.806 - N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
55. cbl ENSDARG00000009958 1321 1.723 - - - - - 0.745 - - 0.978 Cbl proto-oncogene, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041114-207]
56. snrnp200 ENSDARG00000077536, ENSDARG00000114486 4981 1.721 - - - 0.747 - - - 0.974 - small nuclear ribonucleoprotein 200 (U5) [Source:ZFIN;Acc:ZDB-GENE-081105-64]
57. sp1 ENSDARG00000088347 1697 1.715 - - - - - 0.791 0.924 - - sp1 transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-2829]
58. tead1a ENSDARG00000028159 3574 1.714 - - - 0.746 0.968 - - - - TEA domain family member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2101]
59. bysl ENSDARG00000001057 2621 1.711 - 0.739 - - 0.972 - - - - bystin-like [Source:ZFIN;Acc:ZDB-GENE-040426-1287]
60. tubg1 ENSDARG00000015610 2433 1.707 - - - - 0.982 0.725 - - - tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836]
61. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 1.706 - - - - 0.725 - - - 0.981 erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
62. arpc4l ENSDARG00000058225 10107 1.702 - - - - - - 0.857 - 0.845 actin related protein 2/3 complex, subunit 4, like [Source:ZFIN;Acc:ZDB-GENE-040808-18]
63. ywhah ENSDARG00000005560 11079 1.699 - - - - - - 0.782 - 0.917 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-2191]
64. gnb1b ENSDARG00000104372 1077 1.698 0.726 - - - - - - - 0.972 guanine nucleotide binding protein (G protein), beta polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2855]
65. cnih cnih 8292 1.698 - - - - - - 0.869 - 0.829
66. tfdp1b ENSDARG00000016304 3071 1.697 0.726 - - - - - - - 0.971 transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
67. ap2m1a ENSDARG00000002790 9781 1.696 - - - - 0.924 - 0.772 - - adaptor related protein complex 2 subunit mu 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9784]
68. dgcr2 ENSDARG00000042962, ENSDARG00000109230 2339 1.691 - - - - - 0.767 - 0.924 - DiGeorge syndrome critical region gene 2 [Source:ZFIN;Acc:ZDB-GENE-040718-404]
69. hcfc1b ENSDARG00000012519 3633 1.69 0.741 - - - - - - 0.949 - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
70. kmt2d ENSDARG00000037060 1232 1.685 - - - - - 0.703 - 0.982 - lysine (K)-specific methyltransferase 2D [Source:ZFIN;Acc:ZDB-GENE-060223-2]
71. pdcd10b ENSDARG00000012591 3395 1.678 - - - - - 0.741 - 0.937 - programmed cell death 10b [Source:ZFIN;Acc:ZDB-GENE-040426-2607]
72. h2afy2_1 ENSDARG00000087897 9887 1.675 - - - - 0.913 0.762 - - - H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
73. kdm4b ENSDARG00000099675 2037 1.668 - - - - - 0.726 0.942 - - lysine (K)-specific demethylase 4B [Source:ZFIN;Acc:ZDB-GENE-060503-664]
74. rrbp1a ENSDARG00000013763 4723 1.666 - 0.821 - - - - - 0.845 - ribosome binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9795]
75. snrpd1 ENSDARG00000011648 8615 1.665 - 0.720 - - - - 0.945 - - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
76. ttc1 ENSDARG00000044567 1141 1.664 - 0.717 - - - - 0.947 - - tetratricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-041114-80]
77. suds3 ENSDARG00000073737, ENSDARG00000116918 2416 1.663 - - - - - 0.708 0.955 - - SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]
78. psmb2 ENSDARG00000031511 4016 1.662 - - - - - - - 0.950 0.712 proteasome subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-353]
79. ptenb ENSDARG00000056623 5783 1.662 - - - - 0.846 - - - 0.816 phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
80. slc7a6os ENSDARG00000010596 1599 1.656 - - - - - 0.705 - 0.951 - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
81. igfbp3 ENSDARG00000099144 269 1.654 - - - - - 0.716 0.938 - - insulin-like growth factor binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040412-1]
82. MFAP3L ENSDARG00000062752, ENSDARG00000115337 1373 1.653 - 0.731 - - - - 0.922 - - microfibril associated protein 3 like [Source:ZFIN;Acc:ZDB-GENE-111229-2]
83. cpsf1 ENSDARG00000034178 2036 1.652 - - - - - 0.721 0.931 - - cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]
84. arpc1a ENSDARG00000008383 7353 1.651 - 0.736 - - - - - 0.915 - actin related protein 2/3 complex, subunit 1A [Source:ZFIN;Acc:ZDB-GENE-040116-1]
85. srsf5b ENSDARG00000027734 6996 1.647 - - - - - - 0.904 - 0.743 serine/arginine-rich splicing factor 5b [Source:ZFIN;Acc:ZDB-GENE-040718-354]
86. pkma ENSDARG00000099730 1314 1.642 - - - - - 0.723 - 0.919 - pyruvate kinase M1/2a [Source:ZFIN;Acc:ZDB-GENE-031201-4]
87. hsbp1b ENSDARG00000041921 6170 1.641 - - - - 0.725 - - - 0.916 heat shock factor binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1721]
88. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 1.625 - - - - 0.914 - - - 0.711 ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
89. arf5 ENSDARG00000070472, ENSDARG00000115687 12490 1.616 - - - - - - 0.855 0.761 - ADP-ribosylation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030910-5]
90. CU915738.1 CU915738.1 3723 1.609 - - - - - - - 0.798 0.811
91. calr ENSDARG00000076290 13987 1.598 - - - - 0.856 - 0.742 - - calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
92. CABZ01081490.1 ENSDARG00000111653 11892 1.593 - - - - - - 0.784 0.809 -
93. prpf8 ENSDARG00000026180 7026 1.586 - 0.862 - - - - - - 0.724 pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
94. mibp2 ENSDARG00000101844 17444 1.581 - - - - 0.824 - - 0.757 - muscle-specific beta 1 integrin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031113-14]
95. serpinh1a ENSDARG00000075954 6488 1.561 - - - - - - - 0.850 0.711 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a [Source:ZFIN;Acc:ZDB-GENE-080219-21]
96. zgc:162356 zgc:162356 5115 1.538 - 0.745 - - - - 0.793 - -
97. col16a1 ENSDARG00000009194 5600 1.514 - 0.704 - - - - - - 0.810 collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
98. si:dkey-69o16.5 ENSDARG00000070057 3628 1.508 - - - - - - 0.752 0.756 - si:dkey-69o16.5 [Source:ZFIN;Acc:ZDB-GENE-081104-432]
99. DTX4 ENSDARG00000076302 2642 1.498 - - - - - 0.722 - - 0.776 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
100. TMEM45A ENSDARG00000070743 1669 1.477 - 0.752 - - - 0.725 - - - transmembrane protein 45a [Source:ZFIN;Acc:ZDB-GENE-050522-34]

There are 1318 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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