Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scaf1

Gene Name Gene ID Reads Annotation
scaf1 ENSDARG00000054010 3752 SR-related CTD-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-120215-214]










Genes with expression patterns similar to scaf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scaf1 ENSDARG00000054010 3752 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SR-related CTD-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-120215-214]
2. paip2b ENSDARG00000008706 4255 3.02 0.815 0.722 - - - 0.709 - - 0.774 poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
3. smc1al ENSDARG00000058203 8838 2.294 - - 0.750 - - - 0.834 - 0.710 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
4. anp32b ENSDARG00000023330 25013 2.284 - - - - - 0.711 0.823 0.750 - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
5. srrm1 ENSDARG00000001244 4972 2.251 - 0.731 0.724 - - - 0.796 - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
6. rnps1 ENSDARG00000116743 9994 2.233 - - 0.701 - - 0.784 0.748 - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
7. CABZ01092303.1 CABZ01092303.1 8825 1.723 0.904 - - - - - 0.819 - -
8. kif1b ENSDARG00000037020 2124 1.682 0.875 0.807 - - - - - - - kinesin family member 1B [Source:ZFIN;Acc:ZDB-GENE-030820-1]
9. tshz3a ENSDARG00000087394 2455 1.663 0.793 0.870 - - - - - - - teashirt zinc finger homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-100322-1]
10. osgn1 ENSDARG00000052279 5607 1.653 0.862 0.791 - - - - - - - oxidative stress induced growth inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-864]
11. mapre1b ENSDARG00000002659 9119 1.649 0.860 - - - - - - - 0.789 microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
12. rbms1a ENSDARG00000074023 2742 1.636 - 0.802 - - - 0.834 - - - RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
13. znf207a ENSDARG00000015538 2630 1.63 0.817 - - - - - 0.813 - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
14. aup1 ENSDARG00000092609 2431 1.629 0.861 - - - - 0.768 - - - ancient ubiquitous protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3375]
15. gmfb ENSDARG00000028327 6522 1.622 0.837 0.785 - - - - - - - glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
16. vps11 ENSDARG00000036338 421 1.617 0.876 0.741 - - - - - - - vacuolar protein sorting 11 [Source:ZFIN;Acc:ZDB-GENE-050731-5]
17. bub3 ENSDARG00000075883 1333 1.615 0.863 - - - - 0.752 - - - BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210]
18. sumo3b ENSDARG00000035993 3414 1.609 0.836 - 0.773 - - - - - - small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
19. kdm4b ENSDARG00000099675 2037 1.608 0.851 - - - - - - - 0.757 lysine (K)-specific demethylase 4B [Source:ZFIN;Acc:ZDB-GENE-060503-664]
20. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.607 - - - - - - 0.765 - 0.842 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
21. ZBTB16 ZBTB16 3385 1.604 0.845 - - - - - 0.759 - -
22. mllt4 mllt4 2939 1.603 0.780 - - - - - 0.823 - -
23. ptenb ENSDARG00000056623 5783 1.599 - 0.822 - - - - 0.777 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
24. gpm6ab ENSDARG00000004621 5825 1.598 0.880 - - - - - 0.718 - - glycoprotein M6Ab [Source:ZFIN;Acc:ZDB-GENE-030710-8]
25. sdc4 ENSDARG00000059906 10105 1.597 - 0.753 - - - - 0.844 - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
26. rnf11a ENSDARG00000010442 592 1.587 0.849 0.738 - - - - - - - ring finger protein 11a [Source:ZFIN;Acc:ZDB-GENE-040426-1277]
27. atad5a ENSDARG00000070568 1840 1.586 0.882 - - - - - - - 0.704 ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
28. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 1.581 - 0.877 - - - - - 0.704 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
29. ncoa5 ENSDARG00000016345 5765 1.573 - - - - - 0.835 - - 0.738 nuclear receptor coactivator 5 [Source:ZFIN;Acc:ZDB-GENE-040912-155]
30. gnb4b ENSDARG00000115383 7457 1.563 0.851 - - - - - 0.712 - - guanine nucleotide binding protein (G protein), beta polypeptide 4b [Source:ZFIN;Acc:ZDB-GENE-041114-167]
31. myef2 ENSDARG00000059398 6050 1.562 - - - - - - 0.774 - 0.788 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
32. ing4 ENSDARG00000030716 5908 1.558 0.829 - - - - - - 0.729 - inhibitor of growth family, member 4 [Source:ZFIN;Acc:ZDB-GENE-050522-47]
33. bckdk ENSDARG00000016904 3775 1.554 0.733 - - - - - 0.821 - - branched chain ketoacid dehydrogenase kinase [Source:ZFIN;Acc:ZDB-GENE-021204-1]
34. ube2e3 ENSDARG00000012244 8909 1.55 - - 0.780 - - 0.770 - - - ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-408]
35. si:ch211-198a12.6 ENSDARG00000074624, ENSDARG00000114808 8911 1.55 0.825 0.725 - - - - - - - si:ch211-198a12.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1683]
36. CBFA2T3 ENSDARG00000079012 6799 1.54 0.838 - - 0.702 - - - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
37. zmpste24 ENSDARG00000044090, ENSDARG00000115387 3873 1.536 - - - - - - 0.813 - 0.723 zinc metallopeptidase, STE24 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-6312]
38. TTL ENSDARG00000062418 3043 1.526 - 0.757 - - - - - - 0.769 tubulin tyrosine ligase [Source:ZFIN;Acc:ZDB-GENE-060929-608]
39. abat ENSDARG00000006031 2143 1.522 0.808 - - - - - 0.714 - - 4-aminobutyrate aminotransferase [Source:ZFIN;Acc:ZDB-GENE-031006-4]
40. rerea ENSDARG00000077353 4162 1.521 0.747 - - - - - 0.774 - - arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
41. cbfb ENSDARG00000040917 1422 1.52 0.774 - - - - 0.746 - - - core-binding factor, beta subunit [Source:ZFIN;Acc:ZDB-GENE-980526-440]
42. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.519 - - - - - - 0.733 - 0.786 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
43. stmn1a ENSDARG00000004169 21169 1.514 - - - - - - 0.795 - 0.719 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
44. ubtf ENSDARG00000035066 4070 1.508 - - - - - - 0.785 - 0.723 upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
45. lsm14ab ENSDARG00000100553 3837 1.505 - - - - - 0.788 - 0.717 - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
46. ppih ENSDARG00000041530 2085 1.503 0.790 - - - - - 0.713 - - peptidylprolyl isomerase H (cyclophilin H) [Source:ZFIN;Acc:ZDB-GENE-040625-127]
47. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.501 - - - - - - - 0.769 0.732 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
48. tgif1 ENSDARG00000059337 4020 1.501 - - 0.717 - - - - - 0.784 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
49. nucks1a ENSDARG00000078473 28285 1.498 - - 0.776 - - - - 0.722 - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
50. rbx1 ENSDARG00000038030 14611 1.495 0.739 - - - - 0.756 - - - ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
51. tcea1 ENSDARG00000003531 2912 1.495 0.732 - - - - - - 0.763 - transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
52. cdc34b ENSDARG00000012627 3879 1.493 - 0.748 - - - - - 0.745 - cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
53. tmpoa ENSDARG00000007315 3638 1.491 - - - - - - 0.719 0.772 - thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
54. lmnb2 ENSDARG00000101624 11304 1.49 - - - - - - - 0.725 0.765 lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
55. golga7 ENSDARG00000057676 4691 1.488 0.767 - - - - - 0.721 - - golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
56. copz1 ENSDARG00000017844 7277 1.487 - - - - - - 0.717 - 0.770 coatomer protein complex, subunit zeta 1 [Source:ZFIN;Acc:ZDB-GENE-000406-6]
57. arpp19b ENSDARG00000039880 4823 1.484 - - - - - 0.719 - - 0.765 cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
58. GANAB_2 GANAB_2 3210 1.482 - - - - - - - 0.714 0.768
59. usp10 ENSDARG00000103422 4247 1.479 0.708 - 0.771 - - - - - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
60. znf319 znf319 3027 1.475 - - - - - - 0.726 - 0.749
61. hspa4b ENSDARG00000018989, ENSDARG00000112727, ENSDARG00000116230 7043 1.466 - - - - - - 0.715 0.751 - heat shock protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6018]
62. ahctf1 ENSDARG00000077530 2315 1.465 0.760 - - - - - 0.705 - - AT hook containing transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-070521-2]
63. sf3a1 ENSDARG00000041887 6702 1.464 - - - - - - - 0.728 0.736 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
64. hif1an ENSDARG00000031915 2098 1.462 - - - - - - - 0.711 0.751 hypoxia inducible factor 1 subunit alpha inhibitor [Source:ZFIN;Acc:ZDB-GENE-030826-19]
65. u2af2b ENSDARG00000011740 6946 1.462 - - 0.745 - - 0.717 - - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
66. BX511086.1 BX511086.1 8308 1.461 - - 0.734 - - - 0.727 - -
67. polr2k ENSDARG00000075616 2047 1.46 0.757 - - - - - 0.703 - - polymerase (RNA) II (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-070820-18]
68. tbca ENSDARG00000016754 6427 1.459 0.751 0.708 - - - - - - - tubulin cofactor a [Source:ZFIN;Acc:ZDB-GENE-040426-962]
69. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.459 - - - - - 0.732 0.727 - - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
70. TNRC6A ENSDARG00000079688 14433 1.458 - - 0.719 - - - 0.739 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
71. akirin2 ENSDARG00000058729 13245 1.454 0.716 - - - - - 0.738 - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
72. rtf1 ENSDARG00000008947 6596 1.453 - - - - - 0.727 - - 0.726 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
73. mxi1 ENSDARG00000040884, ENSDARG00000111950 3239 1.451 - - 0.720 - - - - - 0.731 max interactor 1, dimerization protein [Source:ZFIN;Acc:ZDB-GENE-990415-151]
74. gps1 ENSDARG00000040650 3893 1.45 - - - - - - 0.701 - 0.749 G protein pathway suppressor 1 [Source:ZFIN;Acc:ZDB-GENE-041111-240]
75. atf7ip ENSDARG00000069619 5495 1.447 - - - - - - 0.710 0.737 - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
76. top1l ENSDARG00000070545 40529 1.447 - - - - - - 0.737 0.710 - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
77. ubap2 ubap2 4167 1.444 - - - - - - - 0.728 0.716
78. ylpm1 ENSDARG00000043680 7676 1.443 - - 0.721 - - - 0.722 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
79. pgam1b ENSDARG00000014068 1830 1.443 - 0.709 - - - - 0.734 - - phosphoglycerate mutase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5376]
80. kdm1a ENSDARG00000060679 6152 1.442 - - 0.728 - - - - 0.714 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
81. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 1.44 - - - - - 0.717 0.723 - - SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
82. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.439 - - 0.709 - - - - - 0.730 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
83. fkbp2 ENSDARG00000044540 1615 1.438 - 0.728 - - - - 0.710 - - FK506 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-126]
84. smc3 ENSDARG00000019000, ENSDARG00000112055 6553 1.435 - - 0.720 - - - - 0.715 - structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]
85. ap1b1 ENSDARG00000020621 3874 1.434 - 0.703 - - - - - - 0.731 adaptor related protein complex 1 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-061025-1]
86. snrnp70 ENSDARG00000077126 5921 1.434 - - 0.725 - - - - 0.709 - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
87. snrpf ENSDARG00000105037 10241 1.434 - - - - - 0.707 0.727 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
88. cited4a ENSDARG00000035990 2762 1.433 - 0.725 - - - 0.708 - - - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a [Source:ZFIN;Acc:ZDB-GENE-030131-7661]
89. pafah1b1a ENSDARG00000032013 3183 1.428 - - 0.708 - - - 0.720 - - platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a [Source:ZFIN;Acc:ZDB-GENE-040116-2]
90. ccnf ENSDARG00000105046 1790 1.425 - - - - - - 0.713 - 0.712 cyclin F [Source:ZFIN;Acc:ZDB-GENE-021030-2]
91. tcf7l1a ENSDARG00000038159 2288 1.417 - - - - - - 0.702 - 0.715 transcription factor 7 like 1a [Source:ZFIN;Acc:ZDB-GENE-980605-30]
92. fen1 ENSDARG00000011404 3358 1.417 - - - - - - 0.711 - 0.706 flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
93. snrpa ENSDARG00000018890 4593 1.416 - - - - - - 0.707 - 0.709 small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
94. srsf5a ENSDARG00000029818 15600 1.414 - - - - - 0.710 - 0.704 - serine/arginine-rich splicing factor 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7336]
95. dpy19l1l ENSDARG00000069995 584 1.412 - 0.703 - 0.709 - - - - - dpy-19-like 1, like (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030521-11]
96. gro2 gro2 1404 1.41 - - - - - 0.702 - - 0.708
97. arhgef2 ENSDARG00000075819 2173 1.41 - 0.704 - - - - - - 0.706 rho/rac guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030717-1]
98. CHST5 CHST5 1293 0.916 0.916 - - - - - - - -
99. elovl6l ENSDARG00000038639 1184 0.912 0.912 - - - - - - - - ELOVL family member 6, elongation of long chain fatty acids like [Source:ZFIN;Acc:ZDB-GENE-031110-3]
100. tmem110l ENSDARG00000045518 1783 0.899 0.899 - - - - - - - - transmembrane protein 110, like [Source:ZFIN;Acc:ZDB-GENE-040426-912]

There are 1150 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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