Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for samm50l

Gene Name Gene ID Reads Annotation
samm50l ENSDARG00000039681 2465 sorting and assembly machinery component 50 homolog, like [Source:ZFIN;Acc:ZDB-GENE-041114-30]










Genes with expression patterns similar to samm50l

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. samm50l ENSDARG00000039681 2465 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sorting and assembly machinery component 50 homolog, like [Source:ZFIN;Acc:ZDB-GENE-041114-30]
2. ranbp9 ENSDARG00000061048 2687 2.721 - - 0.956 - 0.941 - - - 0.824 RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
3. paxip1 ENSDARG00000005606 1417 2.658 0.791 - 0.967 - - - - - 0.900 PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
4. eif4a1b ENSDARG00000003032, ENSDARG00000116907 14301 2.644 - 0.982 - - 0.912 - - - 0.750 eukaryotic translation initiation factor 4A1B [Source:ZFIN;Acc:ZDB-GENE-040120-6]
5. ezrb ENSDARG00000025091 2861 2.58 - 0.986 - - - 0.706 - - 0.888 ezrin b [Source:ZFIN;Acc:ZDB-GENE-050803-1]
6. max ENSDARG00000024844 6035 2.57 - 0.975 0.864 - - - 0.731 - - myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
7. pabpn1 ENSDARG00000045373 4876 2.546 - - 0.869 - - 0.735 - - 0.942 poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
8. nop10 ENSDARG00000104227 2463 2.54 - - 0.894 - 0.909 - 0.737 - - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
9. mrpl3 ENSDARG00000103318 2308 2.514 - - - - - 0.756 0.868 - 0.890 mitochondrial ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-8227]
10. smg7 ENSDARG00000060767 2759 2.513 - - - - 0.936 0.816 0.761 - - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
11. gstm gstm 4064 2.46 - - 0.920 - - 0.815 0.725 - -
12. pvrl1b 1645 2.431 - - - - - 0.813 0.728 - 0.890 poliovirus receptor-related 1b
13. phf16 phf16 1116 2.379 0.702 - - - 0.967 - 0.710 - -
14. WDR83OS ENSDARG00000025554 7117 2.353 - - - - 0.833 - 0.796 - 0.724 WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
15. dyrk1ab ENSDARG00000023814 1769 1.973 - 0.998 0.975 - - - - - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A, b [Source:ZFIN;Acc:ZDB-GENE-030131-5677]
16. zgc:111974 zgc:111974 1386 1.946 - 0.997 - - 0.949 - - - -
17. xylt1 ENSDARG00000061248 2357 1.945 - 0.998 0.947 - - - - - - xylosyltransferase I [Source:ZFIN;Acc:ZDB-GENE-111017-2]
18. bmpr1bb ENSDARG00000102742 1036 1.934 - 0.996 - - - - - - 0.938 bone morphogenetic protein receptor, type IBb [Source:ZFIN;Acc:ZDB-GENE-090610-1]
19. pdzrn3b ENSDARG00000073869 1566 1.933 - - 0.976 - - - - - 0.957 PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]
20. CPEB4 CPEB4 3249 1.932 - 0.983 - - 0.949 - - - -
21. nol8 ENSDARG00000044143 425 1.905 - - - - 0.963 - - - 0.942 nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
22. tpcn1 ENSDARG00000062362 563 1.895 - - - - 0.961 - - - 0.934 two pore segment channel 1 [Source:ZFIN;Acc:ZDB-GENE-060526-199]
23. ikbkb ENSDARG00000079123 498 1.886 - - - - 0.957 - - - 0.929 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:ZFIN;Acc:ZDB-GENE-071115-2]
24. polb ENSDARG00000003749 2049 1.886 - - 0.952 - 0.934 - - - - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
25. cdan1 ENSDARG00000042261 658 1.883 - - - - 0.960 - - - 0.923 codanin 1 [Source:ZFIN;Acc:ZDB-GENE-110411-280]
26. anapc11 ENSDARG00000102531, ENSDARG00000116987 1769 1.872 - - 0.966 - - - - - 0.906 APC11 anaphase promoting complex subunit 11 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-061013-383]
27. olig2 ENSDARG00000040946 1405 1.867 - - 0.963 - - - - - 0.904 oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
28. tdg tdg 3269 1.865 - - 0.939 - 0.926 - - - -
29. nploc4 ENSDARG00000100487 1262 1.864 - - 0.972 - - - - - 0.892 NPL4 homolog, ubiquitin recognition factor [Source:ZFIN;Acc:ZDB-GENE-030131-5658]
30. flot2a ENSDARG00000004830 5276 1.86 - - 0.964 - 0.896 - - - - flotillin 2a [Source:ZFIN;Acc:ZDB-GENE-020430-3]
31. fbxo28 ENSDARG00000027159 9602 1.852 - 0.958 0.894 - - - - - - F-box protein 28 [Source:ZFIN;Acc:ZDB-GENE-030131-4665]
32. phc2b_1 ENSDARG00000013224 1316 1.851 - - 0.965 - - - - - 0.886 polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
33. gdi1 ENSDARG00000056122 4106 1.848 - - 0.968 - - - - - 0.880 GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
34. eif4e3 ENSDARG00000005078 1624 1.839 - - 0.967 - - - - - 0.872 eukaryotic translation initiation factor 4E family member 3 [Source:ZFIN;Acc:ZDB-GENE-040912-156]
35. arfip1 ENSDARG00000070055, ENSDARG00000116473 3113 1.824 - - - - 0.911 - - - 0.913 ADP-ribosylation factor interacting protein 1 (arfaptin 1) [Source:ZFIN;Acc:ZDB-GENE-040426-2690]
36. KRT18 ENSDARG00000018404, ENSDARG00000109528 6022 1.819 - - 0.948 - - - - - 0.871 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
37. eya3 ENSDARG00000036100 1965 1.819 - - - - 0.922 - - - 0.897 EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
38. tmem248 ENSDARG00000018825 1560 1.815 - - 0.969 - - - - - 0.846 transmembrane protein 248 [Source:ZFIN;Acc:ZDB-GENE-050320-103]
39. wif1 ENSDARG00000005541 1689 1.805 - - - - 0.942 - - - 0.863 wnt inhibitory factor 1 [Source:ZFIN;Acc:ZDB-GENE-990712-17]
40. nrg1 ENSDARG00000104314 1081 1.805 - - 0.976 - - 0.829 - - - neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
41. mcts1 ENSDARG00000025972 4662 1.799 - - 0.946 - - - - - 0.853 malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
42. pld1b ENSDARG00000057125 325 1.795 0.820 - 0.975 - - - - - - phospholipase D1b [Source:ZFIN;Acc:ZDB-GENE-070510-3]
43. tufm ENSDARG00000104173 9292 1.791 - 0.946 0.845 - - - - - - Tu translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050320-73]
44. gpr143 ENSDARG00000034572 559 1.788 - - - - - 0.846 - - 0.942 G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
45. arid1b ENSDARG00000092503 1376 1.786 - - 0.967 - - - - - 0.819 AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459]
46. STARD4 ENSDARG00000102477 411 1.775 - 0.997 - - - 0.778 - - - StAR-related lipid transfer (START) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-050417-168]
47. utp6 ENSDARG00000098433, ENSDARG00000114878, ENSDARG00000116788 1262 1.768 - - 0.973 - - 0.795 - - - UTP6, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-769]
48. mier1a ENSDARG00000041072 1690 1.765 - - - - 0.928 - - - 0.837 mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
49. ndufa4 ENSDARG00000056108, ENSDARG00000116304 2355 1.76 - - - - 0.936 - 0.824 - - NADH:ubiquinone oxidoreductase subunit A4 [Source:ZFIN;Acc:ZDB-GENE-040426-1962]
50. pbxip1b ENSDARG00000011824 3726 1.76 - - 0.905 - - - - - 0.855 pre-B-cell leukemia homeobox interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2032]
51. mcrs1 ENSDARG00000020840 3232 1.759 - - - - 0.956 - - - 0.803 microspherule protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2434]
52. arhgap29b ENSDARG00000017748 812 1.747 - - - - 0.962 0.785 - - - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
53. hig1 hig1 2493 1.746 - 0.988 - - - 0.758 - - -
54. slc31a1 ENSDARG00000013961, ENSDARG00000110656 4072 1.746 - 0.933 - - - 0.813 - - - solute carrier family 31 (copper transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040415-3]
55. smarce1 ENSDARG00000016871 9628 1.739 - 0.988 0.751 - - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
56. derl1 ENSDARG00000021905 4698 1.739 - - - - - - 0.860 - 0.879 derlin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2793]
57. srsf6b ENSDARG00000016783 9926 1.738 - 0.970 - - - - - - 0.768 serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
58. snx5 ENSDARG00000020442 2463 1.738 - - - - 0.931 - - - 0.807 sorting nexin 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2857]
59. kifc1 ENSDARG00000001558 6658 1.733 - - 0.837 - - - - - 0.896 kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
60. pcdh18a ENSDARG00000089805 1096 1.728 - - - - 0.963 - - - 0.765 protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
61. KIF1A KIF1A 1686 1.728 - - - - 0.944 - - - 0.784
62. gbas gbas 735 1.726 - - 0.968 - - 0.758 - - -
63. acap3a ENSDARG00000075990 9652 1.723 - 0.982 - - 0.741 - - - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a [Source:ZFIN;Acc:ZDB-GENE-030131-1711]
64. TRIP10 TRIP10 1079 1.721 - - - - - 0.783 - - 0.938
65. matr3l1.1 ENSDARG00000000394, ENSDARG00000001162 3757 1.721 - 0.992 - - - - 0.729 - - matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
66. cbfa2t2 ENSDARG00000074337 4323 1.719 - - 0.950 - - 0.769 - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
67. smurf2 ENSDARG00000038067 2057 1.719 - - - - 0.959 0.760 - - - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
68. si:dkey-19e4.5 ENSDARG00000089886 2562 1.712 - - - - 0.954 - 0.758 - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
69. ss18 ENSDARG00000002970 2618 1.711 - - 0.952 - - - 0.759 - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
70. mfap2 ENSDARG00000059367 3774 1.705 - - - - 0.857 - 0.848 - - microfibril associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6710]
71. si:dkey-95p16.2 ENSDARG00000093484 3413 1.703 - - 0.870 - 0.833 - - - - si:dkey-95p16.2 [Source:ZFIN;Acc:ZDB-GENE-081105-65]
72. strn3 ENSDARG00000001729 4608 1.701 - - 0.957 - - - 0.744 - - striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
73. taz ENSDARG00000041421 985 1.701 - - - - - 0.766 - - 0.935 tafazzin [Source:ZFIN;Acc:ZDB-GENE-030131-684]
74. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.696 - - - - 0.854 - - - 0.842 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
75. ywhah ENSDARG00000005560 11079 1.693 0.736 0.957 - - - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-2191]
76. pex13 ENSDARG00000071037 738 1.693 - - - - - 0.800 - - 0.893 peroxisomal biogenesis factor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1544]
77. PATZ1 ENSDARG00000076584 1116 1.691 - - 0.971 - - - 0.720 - - POZ (BTB) and AT hook containing zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-111223-4]
78. RAB39B RAB39B 482 1.687 0.712 - 0.975 - - - - - -
79. cln6a ENSDARG00000077584 1090 1.683 - - 0.967 - - 0.716 - - - CLN6, transmembrane ER protein a [Source:ZFIN;Acc:ZDB-GENE-041010-57]
80. gid8b ENSDARG00000037589 2121 1.682 - - - - - 0.752 - - 0.930 GID complex subunit 8 homolog b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030515-4]
81. rwdd ENSDARG00000068256 964 1.678 - - - - - 0.786 - - 0.892 RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
82. nupl2 ENSDARG00000029043 105 1.672 0.731 - - - - - - - 0.941 nucleoporin like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2292]
83. ppig ENSDARG00000044431 3427 1.668 - - - - - 0.865 0.803 - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
84. rnf121 ENSDARG00000060282 1809 1.666 - - - - - - 0.717 - 0.949 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
85. ZBTB16 ZBTB16 3385 1.664 - - 0.903 - - - - - 0.761
86. lysmd2 ENSDARG00000091771, ENSDARG00000112692 1102 1.663 0.712 - - - 0.951 - - - - LysM, putative peptidoglycan-binding, domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040801-250]
87. ik ENSDARG00000004161 3132 1.662 - - - - - 0.777 - - 0.885 IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
88. cmip ENSDARG00000062933 4521 1.661 - - 0.940 - - 0.721 - - - c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
89. srebf1 ENSDARG00000067607 1537 1.657 - - - - - - 0.777 - 0.880 sterol regulatory element binding transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-090812-3]
90. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.655 - - - - 0.900 - 0.755 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
91. ngly1 ENSDARG00000003205 733 1.655 - - - - - 0.735 - - 0.920 N-glycanase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-535]
92. vcp ENSDARG00000020008, ENSDARG00000116074 2284 1.653 - - 0.712 - - - - - 0.941 valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
93. rbm34 ENSDARG00000101877 1573 1.651 - - - - - 0.728 - - 0.923 RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77]
94. atp2b4 5891 1.649 - 0.934 - - - - 0.715 - - ATPase, Ca++ transporting, plasma membrane 4
95. taf11 ENSDARG00000037855 2624 1.642 - - - - 0.940 - 0.702 - - TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-040718-283]
96. dhrs13a.2 ENSDARG00000111240 491 1.64 - - - - - 0.721 - - 0.919 dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
97. araf ENSDARG00000054533 1132 1.639 - - - - - - 0.713 - 0.926 A-Raf proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050102-2]
98. cnot3a ENSDARG00000007135 3084 1.637 - - 0.871 - - - - - 0.766 CCR4-NOT transcription complex, subunit 3a [Source:ZFIN;Acc:ZDB-GENE-040927-6]
99. otub1b ENSDARG00000011462 4329 1.632 - - - - - - 0.743 - 0.889 OTU deubiquitinase, ubiquitin aldehyde binding 1b [Source:ZFIN;Acc:ZDB-GENE-040718-204]
100. dazap2 ENSDARG00000007867 1805 1.619 - - - - - - 0.791 - 0.828 DAZ associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3036]

There are 1804 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA