Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for samm50

Gene Name Gene ID Reads Annotation
samm50 ENSDARG00000045814 4511 SAMM50 sorting and assembly machinery component [Source:ZFIN;Acc:ZDB-GENE-040426-806]










Genes with expression patterns similar to samm50

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. samm50 ENSDARG00000045814 4511 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SAMM50 sorting and assembly machinery component [Source:ZFIN;Acc:ZDB-GENE-040426-806]
2. caspb ENSDARG00000052039 4329 1.972 - - - - - - 0.995 - 0.977 caspase b [Source:ZFIN;Acc:ZDB-GENE-020812-1]
3. zgc:153867 35088 1.924 - - - - - - 0.970 - 0.954 zgc:153867, transcript variant X2
4. MRPL21 ENSDARG00000003846 3244 1.833 - 0.844 - - - - - - 0.989 mitochondrial ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-061027-183]
5. eif2s3 ENSDARG00000008292 17051 1.81 - 0.877 - - - - - - 0.933 eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
6. zgc:123105 ENSDARG00000003127 3061 1.779 - 0.788 - - - - - - 0.991 zgc:123105 [Source:ZFIN;Acc:ZDB-GENE-051113-272]
7. csnk1g2b ENSDARG00000034056, ENSDARG00000114050 3502 1.77 - 0.780 - - - - - - 0.990 casein kinase 1, gamma 2b [Source:ZFIN;Acc:ZDB-GENE-060825-285]
8. prmt5 ENSDARG00000079605, ENSDARG00000116785 4676 1.767 - 0.777 - - - - - - 0.990 protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
9. eif1axb ENSDARG00000057912, ENSDARG00000111310 26395 1.764 - - - - - - - 0.835 0.929 eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
10. ola1 ENSDARG00000044565 22424 1.763 - - - - - 0.770 0.993 - - Obg-like ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5063]
11. rad21a_1 ENSDARG00000006092 4482 1.757 - - - - - 0.778 - - 0.979 RAD21 cohesin complex component a [Source:ZFIN;Acc:ZDB-GENE-030131-994]
12. lin7a ENSDARG00000013414 1589 1.756 - 0.762 - - - - - - 0.994 lin-7 homolog A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-1665]
13. nolc1 ENSDARG00000024561 3457 1.748 - 0.757 - - - - - - 0.991 nucleolar and coiled-body phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6349]
14. ptpn21 ENSDARG00000062248 2010 1.745 - 0.752 - - - - - - 0.993 protein tyrosine phosphatase, non-receptor type 21 [Source:ZFIN;Acc:ZDB-GENE-080102-4]
15. nop56 ENSDARG00000012820 15231 1.734 - - - - - 0.743 0.991 - - NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
16. idh3b ENSDARG00000044753, ENSDARG00000110992 3965 1.723 - - - - - 0.737 - - 0.986 isocitrate dehydrogenase 3 (NAD+) beta [Source:ZFIN;Acc:ZDB-GENE-040625-174]
17. CD99L2 ENSDARG00000056722 5588 1.721 - - - - - - - 0.736 0.985 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
18. hint1 ENSDARG00000103824, ENSDARG00000110789 8302 1.717 - - - - - 0.718 0.999 - - histidine triad nucleotide binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040927-8]
19. zgc:55461 ENSDARG00000116706, ENSDARG00000117112 2835 1.714 - - - - - - - 0.722 0.992 zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]
20. sypl2a ENSDARG00000055307, ENSDARG00000115972 7103 1.71 - 0.729 - - - - - - 0.981 synaptophysin-like 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1434]
21. st3gal3a ENSDARG00000015374 2360 1.703 - 0.703 - - - - 1.000 - - ST3 beta-galactoside alpha-2,3-sialyltransferase 3a [Source:ZFIN;Acc:ZDB-GENE-040426-1322]
22. puf60b ENSDARG00000001241 13827 1.702 - - - - - - 0.996 0.706 - poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
23. ndufs2 ENSDARG00000007526 6516 1.702 - - - - - 0.704 0.998 - - NADH:ubiquinone oxidoreductase core subunit S2 [Source:ZFIN;Acc:ZDB-GENE-050522-273]
24. dnaja1l dnaja1l 1536 1.701 - 0.701 - - - - 1.000 - -
25. akap1b ENSDARG00000006062 4214 1.7 - 0.701 - - - - 0.999 - - A kinase (PRKA) anchor protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6844]
26. psmd4a ENSDARG00000101295 1410 1.699 - - - - - 0.705 - - 0.994 proteasome 26S subunit, non-ATPase 4a [Source:ZFIN;Acc:ZDB-GENE-040625-104]
27. eif2s1b ENSDARG00000052178 11961 1.698 - - - - - 0.757 - - 0.941 eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
28. atp5h 18018 1.689 - 0.825 - - - 0.864 - - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, transcript variant X1
29. acin1b ENSDARG00000026842 3806 1.688 - 0.837 - - - - - 0.851 - apoptotic chromatin condensation inducer 1b [Source:ZFIN;Acc:ZDB-GENE-030826-12]
30. pl10 pl10 10795 1.679 - 0.706 - - - - - - 0.973
31. timm9 ENSDARG00000043865 2456 1.634 - 0.863 - - - 0.771 - - - translocase of inner mitochondrial membrane 9 homolog [Source:ZFIN;Acc:ZDB-GENE-021206-14]
32. atp5d 20825 1.626 - - - - - 0.721 - - 0.905 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
33. klhl21 ENSDARG00000039255 2550 1.615 - 0.818 - - - 0.797 - - - kelch-like family member 21 [Source:ZFIN;Acc:ZDB-GENE-040426-2627]
34. myef2 ENSDARG00000059398 6050 1.587 - 0.799 - - - - - 0.788 - myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
35. dnaja3a ENSDARG00000058494, ENSDARG00000111151 2497 1.587 - 0.789 - - - 0.798 - - - DnaJ (Hsp40) homolog, subfamily A, member 3A [Source:ZFIN;Acc:ZDB-GENE-030131-7837]
36. cdkn2aipnl ENSDARG00000053395 5107 1.58 - 0.816 - - - 0.764 - - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
37. mrpl12 ENSDARG00000038768 5539 1.575 - 0.832 - - - 0.743 - - - mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]
38. C12H10orf118 C12H10orf118 964 1.572 - 0.762 - - - - - 0.810 -
39. nsa2 ENSDARG00000007708 6329 1.568 0.805 - - - - 0.763 - - - NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-488]
40. eif3d ENSDARG00000021257 1524 1.567 - 0.768 - - - 0.799 - - - eukaryotic translation initiation factor 3, subunit D [Source:ZFIN;Acc:ZDB-GENE-030131-8442]
41. CU633479.5 ENSDARG00000114818 1815 1.567 - 0.731 - - - 0.836 - - -
42. cox14 ENSDARG00000092124 2229 1.561 - 0.844 - - - - - 0.717 - cytochrome c oxidase assembly factor COX14 [Source:ZFIN;Acc:ZDB-GENE-060503-626]
43. gipc1 ENSDARG00000104483 2913 1.557 - 0.808 - - - - - 0.749 - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
44. ndufb6 ENSDARG00000037259 6515 1.539 - 0.785 - - - 0.754 - - - NADH:ubiquinone oxidoreductase subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1781]
45. paip2b ENSDARG00000008706 4255 1.539 - 0.821 - - - 0.718 - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
46. hprt1 ENSDARG00000008884, ENSDARG00000117138 2486 1.539 - 0.714 - - - - - 0.825 - hypoxanthine phosphoribosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1918]
47. MYOM3 2720 1.528 - 0.764 - - - 0.764 - - - myomesin 3, transcript variant X2
48. sucla2 ENSDARG00000005359 5992 1.52 - 0.784 - - - 0.736 - - - succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
49. EML4_1 EML4_1 8736 1.52 0.795 0.725 - - - - - - -
50. ndufv3 ENSDARG00000090389 4829 1.519 0.744 - - - - 0.775 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:ZFIN;Acc:ZDB-GENE-030131-6500]
51. ift46 ENSDARG00000011240 2499 1.511 - 0.736 - - - - - 0.775 - intraflagellar transport 46 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-080102-3]
52. slc25a16 ENSDARG00000057287, ENSDARG00000109352 988 1.508 - 0.759 - - - - - 0.749 - solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 [Source:ZFIN;Acc:ZDB-GENE-030131-3299]
53. si:ch73-21k16.6 si:ch73-21k16.6 4896 1.503 - 0.781 - - - 0.722 - - -
54. pcyt1aa ENSDARG00000011233 1985 1.494 - 0.785 - - - - - 0.709 - phosphate cytidylyltransferase 1, choline, alpha a [Source:ZFIN;Acc:ZDB-GENE-050417-108]
55. nae1 ENSDARG00000011301, ENSDARG00000111542 1505 1.494 - 0.735 - - - - - 0.759 - nedd8 activating enzyme E1 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1552]
56. rreb1b ENSDARG00000042652 2731 1.494 - 0.729 - - - 0.765 - - - ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]
57. six1b ENSDARG00000026473 1908 1.493 - 0.732 - - - 0.761 - - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
58. Sep-06 Sep-06 5465 1.492 - 0.706 - - - - - 0.786 -
59. spc25 ENSDARG00000078433 1316 1.486 - 0.770 - - - - - 0.716 - SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-13]
60. ppp6r3 ENSDARG00000013379 2912 1.477 0.750 - - - - - - 0.727 - protein phosphatase 6, regulatory subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3251]
61. ubr5 ENSDARG00000018192 9267 1.474 - 0.729 - - - - - - 0.745 ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
62. nt5c2a ENSDARG00000039399 3062 1.473 - - 0.729 - - - - 0.744 - 5'-nucleotidase, cytosolic IIa [Source:ZFIN;Acc:ZDB-GENE-030131-3566]
63. tomm40l ENSDARG00000036721 1714 1.47 - 0.714 - - - 0.756 - - - translocase of outer mitochondrial membrane 40 homolog, like [Source:ZFIN;Acc:ZDB-GENE-040426-2319]
64. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.466 - 0.738 - - - 0.728 - - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
65. adcy7 ENSDARG00000060070 1878 1.459 - 0.711 - - - 0.748 - - - adenylate cyclase 7 [Source:ZFIN;Acc:ZDB-GENE-040713-1]
66. grpel1 ENSDARG00000010021 3055 1.455 - 0.724 - - - - - 0.731 - GrpE-like 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-051120-111]
67. ndufs6 ENSDARG00000056583 7220 1.449 - 0.701 - - - 0.748 - - - NADH:ubiquinone oxidoreductase subunit S6 [Source:ZFIN;Acc:ZDB-GENE-040912-86]
68. MRPL55 MRPL55 1711 1.448 - 0.713 - - - 0.735 - - -
69. mrps34 ENSDARG00000057910 2007 1.447 - 0.741 - - - 0.706 - - - mitochondrial ribosomal protein S34 [Source:ZFIN;Acc:ZDB-GENE-041114-71]
70. larp1b ENSDARG00000061169 9939 1.424 - 0.721 0.703 - - - - - - La ribonucleoprotein domain family, member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4154]
71. wdr33 ENSDARG00000018272 4076 1 - - - - - - 1.000 - - WD repeat domain 33 [Source:ZFIN;Acc:ZDB-GENE-040924-3]
72. pah ENSDARG00000020143 1551 1 - - - - - - 1.000 - - phenylalanine hydroxylase [Source:ZFIN;Acc:ZDB-GENE-031006-2]
73. ccdc124 ENSDARG00000043502 2420 1 - - - - - - 1.000 - - coiled-coil domain containing 124 [Source:ZFIN;Acc:ZDB-GENE-040426-1483]
74. gpd1a ENSDARG00000043701 1105 1 - - - - - - 1.000 - - glycerol-3-phosphate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-050417-209]
75. stag2a ENSDARG00000011783 1588 1 - - - - - - 1.000 - - stromal antigen 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3432]
76. zgc:110329 ENSDARG00000035532, ENSDARG00000110423 2229 1 - - - - - - 1.000 - - zgc:110329 [Source:ZFIN;Acc:ZDB-GENE-050417-334]
77. yars ENSDARG00000035913, ENSDARG00000113430 2043 1 - - - - - - 1.000 - - tyrosyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030425-2]
78. gtf2f1 ENSDARG00000032129 3041 1 - - - - - - 1.000 - - general transcription factor IIF, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4557]
79. nup133 ENSDARG00000010078 2373 1 - - - - - - 1.000 - - nucleoporin 133 [Source:ZFIN;Acc:ZDB-GENE-040426-2941]
80. NRD1 NRD1 3486 1 - - - - - - 1.000 - -
81. p4ha1b ENSDARG00000071082, ENSDARG00000112774 3198 0.999 - - - - - - 0.999 - - prolyl 4-hydroxylase, alpha polypeptide I b [Source:ZFIN;Acc:ZDB-GENE-030131-4089]
82. slc25a48 ENSDARG00000021250 1057 0.999 - - - - - - 0.999 - - solute carrier family 25, member 48 [Source:ZFIN;Acc:ZDB-GENE-040718-60]
83. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 0.999 - - - - - - 0.999 - - immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
84. cnnm2a ENSDARG00000061195 764 0.999 - - - - - - 0.999 - - cyclin and CBS domain divalent metal cation transport mediator 2a [Source:ZFIN;Acc:ZDB-GENE-050208-36]
85. rab32a ENSDARG00000029036 2157 0.999 - - - - - - 0.999 - - RAB32a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031006-10]
86. inab ENSDARG00000053248 3239 0.999 - - - - - - 0.999 - - internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
87. phf23b ENSDARG00000036305 1073 0.999 - - - - - - 0.999 - - PHD finger protein 23b [Source:ZFIN;Acc:ZDB-GENE-030131-5895]
88. lmf2b ENSDARG00000025859, ENSDARG00000115591 2671 0.999 - - - - - - 0.999 - - lipase maturation factor 2b [Source:ZFIN;Acc:ZDB-GENE-070206-11]
89. mtch2 ENSDARG00000019732 3948 0.999 - - - - - - 0.999 - - mitochondrial carrier homolog 2 [Source:ZFIN;Acc:ZDB-GENE-991008-9]
90. fam32al fam32al 5716 0.999 - - - - - - 0.999 - -
91. C5H8orf4 C5H8orf4 2740 0.999 - - - - - - 0.999 - -
92. ggcx ENSDARG00000067805 3812 0.999 - - - - - - 0.999 - - gamma-glutamyl carboxylase [Source:ZFIN;Acc:ZDB-GENE-030826-27]
93. TATDN3 ENSDARG00000044072 914 0.999 - - - - - - 0.999 - - TatD DNase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:27010]
94. psmb6 ENSDARG00000002240 8015 0.999 - - - - - - 0.999 - - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
95. tbc1d16 ENSDARG00000036994 948 0.999 - - - - - - 0.999 - - TBC1 domain family, member 16 [Source:ZFIN;Acc:ZDB-GENE-041010-179]
96. loxl3b ENSDARG00000039563 1657 0.999 - - - - - - 0.999 - - lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
97. ctns ENSDARG00000008890 887 0.999 - - - - - - 0.999 - - cystinosin, lysosomal cystine transporter [Source:ZFIN;Acc:ZDB-GENE-050522-352]
98. sncb ENSDARG00000104945 8197 0.999 - - - - - - 0.999 - - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
99. NDUFB1 ENSDARG00000087456 8270 0.999 - - - - - - 0.999 - - NADH:ubiquinone oxidoreductase subunit B1 [Source:HGNC Symbol;Acc:HGNC:7695]
100. zgc:65895 ENSDARG00000034086 1258 0.999 - - - - - - 0.999 - - zgc:65895 [Source:ZFIN;Acc:ZDB-GENE-040426-1466]

There are 1082 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA