Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ryr1a

Gene Name Gene ID Reads Annotation
ryr1a ENSDARG00000011422 2377 ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]










Genes with expression patterns similar to ryr1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ryr1a ENSDARG00000011422 2377 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
2. rif1 ENSDARG00000062650, ENSDARG00000110568 1751 2.528 - 0.808 - - - 0.721 0.999 - - replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
3. gsna ENSDARG00000011459, ENSDARG00000115062, ENSDARG00000116084 1623 2.426 0.987 - - - - 0.720 - 0.719 - gelsolin a [Source:ZFIN;Acc:ZDB-GENE-030131-9653]
4. tnnc1b ENSDARG00000037539 13945 2.411 - 0.917 - - - 0.709 - - 0.785 troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
5. trim55a ENSDARG00000029596 2858 2.373 - 0.795 0.716 - - 0.862 - - - tripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
6. jph1a ENSDARG00000058603 2852 1.87 0.990 0.880 - - - - - - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
7. BX511021.1 ENSDARG00000073936 647 1.869 0.996 0.873 - - - - - - - ferritin, middle subunit-like [Source:NCBI gene;Acc:100006428]
8. phf12a ENSDARG00000074303 1025 1.841 0.995 0.846 - - - - - - - PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
9. vcl vcl 6667 1.837 - 0.839 - - - - 0.998 - -
10. SNORD33 SNORD33 3284 1.802 - - - - - 0.803 0.999 - -
11. sgcb ENSDARG00000052341 4168 1.786 0.983 0.803 - - - - - - - sarcoglycan, beta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-6695]
12. hbbe2 ENSDARG00000045143, ENSDARG00000109554 5244 1.769 - 0.770 - - - - 0.999 - - hemoglobin beta embryonic-2 [Source:ZFIN;Acc:ZDB-GENE-040702-1]
13. rnd3a ENSDARG00000076799 4705 1.765 - 0.766 - - - - 0.999 - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
14. ncl ENSDARG00000002710 16951 1.735 - 0.739 - - - - 0.996 - - nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
15. col11a1b ENSDARG00000009014 9998 1.721 0.978 0.743 - - - - - - - collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
16. AL929007.1 AL929007.1 3649 1.716 0.992 - - - - 0.724 - - -
17. nop2 ENSDARG00000043304 2511 1.714 0.989 0.725 - - - - - - - NOP2 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-050309-7]
18. wdr3 ENSDARG00000011079 1403 1.702 0.995 0.707 - - - - - - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
19. tnnt2d ENSDARG00000002988 7590 1.695 - 0.882 - - - 0.813 - - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
20. taf7 ENSDARG00000019572 1305 1.692 0.988 0.704 - - - - - - - TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-020419-18]
21. hbbe1.1 ENSDARG00000113599 64815 1.692 - 0.751 - - - - 0.941 - - hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
22. tpm3 ENSDARG00000005162 86049 1.69 - - - - - 0.817 0.873 - - tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
23. tob1b ENSDARG00000021372 7048 1.664 0.955 - - - 0.709 - - - - transducer of ERBB2, 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2151]
24. nfya ENSDARG00000042004, ENSDARG00000114231 6606 1.663 0.947 0.716 - - - - - - - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
25. phgdh ENSDARG00000001873 8325 1.663 0.955 0.708 - - - - - - - phosphoglycerate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-647]
26. sptb ENSDARG00000030490 7128 1.659 - 0.902 0.757 - - - - - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
27. crtap ENSDARG00000018010 7722 1.634 0.909 - - - - 0.725 - - - cartilage associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-2619]
28. tgm1l1 ENSDARG00000102106 1437 1.603 - 0.826 0.777 - - - - - - transglutaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-139]
29. ptrhd1 ENSDARG00000016122 2705 1.57 - 0.730 - - - 0.840 - - - peptidyl-tRNA hydrolase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081110-2]
30. AIMP1 ENSDARG00000060036 4136 1.563 - 0.845 - - - - - 0.718 - aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
31. pbxip1a ENSDARG00000071015 4960 1.561 - 0.846 - 0.715 - - - - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
32. LMOD3 ENSDARG00000062662, ENSDARG00000115769 456 1.545 - 0.822 - - 0.723 - - - - leiomodin 3 (fetal) [Source:ZFIN;Acc:ZDB-GENE-090313-353]
33. ptp4a3 ENSDARG00000039997 1964 1.542 - 0.732 - - - 0.810 - - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
34. myod1 ENSDARG00000030110 6019 1.521 - 0.798 - - - - - - 0.723 myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
35. trdn ENSDARG00000041779 4283 1.502 - 0.763 - - - 0.739 - - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
36. sfrp2 ENSDARG00000070050, ENSDARG00000114620 1681 1.501 - 0.708 - - - 0.793 - - - secreted frizzled-related protein 2 [Source:ZFIN;Acc:ZDB-GENE-061013-293]
37. nmrk2 ENSDARG00000067848 10293 1.499 0.709 0.790 - - - - - - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
38. txn2 ENSDARG00000034777 4071 1.496 - 0.725 - - - - - 0.771 - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
39. apobec2a ENSDARG00000018881 4790 1.496 - 0.774 - - - - - - 0.722 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2a [Source:ZFIN;Acc:ZDB-GENE-050306-15]
40. tns1 tns1 5891 1.49 - 0.718 - - - 0.772 - - -
41. si:ch211-242b18.1 ENSDARG00000054723 2929 1.484 - 0.773 - - - - - 0.711 - si:ch211-242b18.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1518]
42. srpk3 ENSDARG00000005916 1546 1.464 - 0.757 - - - 0.707 - - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
43. fgf6a ENSDARG00000009351 799 1.463 - 0.712 - - - 0.751 - - - fibroblast growth factor 6a [Source:ZFIN;Acc:ZDB-GENE-980526-559]
44. trim55b ENSDARG00000058158 586 1.461 - 0.761 - - - 0.700 - - - tripartite motif containing 55b [Source:ZFIN;Acc:ZDB-GENE-060312-37]
45. tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 1.458 - 0.713 - - - 0.745 - - - transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]
46. gmpr ENSDARG00000016160 1537 1.455 - 0.715 - - - 0.740 - - - guanosine monophosphate reductase [Source:ZFIN;Acc:ZDB-GENE-050522-48]
47. EEF1E1 ENSDARG00000071774 3806 1.453 - 0.723 - - - 0.730 - - - eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
48. zgc:158296 ENSDARG00000070923 3935 1.452 - 0.727 0.725 - - - - - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
49. gpx7 ENSDARG00000091511 3045 1.451 - 0.710 - - - 0.741 - - - glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
50. si:ch211-121a2.2 ENSDARG00000039682 1240 1.45 - - - 0.727 - 0.723 - - - si:ch211-121a2.2 [Source:ZFIN;Acc:ZDB-GENE-070705-21]
51. CCK CCK 1826 1.448 - - - 0.703 - 0.745 - - -
52. FSD2 518 1.444 - 0.711 - - - 0.733 - - - fibronectin type III and SPRY domain containing 2
53. tnni2b.1 ENSDARG00000035958 51597 1.406 - - 0.701 - - - - - 0.705 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
54. NDUFB2 ENSDARG00000045490 9141 1 - - - - - - 1.000 - - NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
55. oafa ENSDARG00000075851 2015 1 - - - - - - 1.000 - - OAF homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090917-1]
56. wwp2 ENSDARG00000061345 3459 1 - - - - - - 1.000 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-000607-82]
57. pcif1 ENSDARG00000099084 2851 0.999 - - - - - - 0.999 - - PDX1 C-terminal inhibiting factor 1 [Source:ZFIN;Acc:ZDB-GENE-120920-2]
58. LMLN ENSDARG00000061265 1618 0.999 - - - - - - 0.999 - - leishmanolysin-like (metallopeptidase M8 family) [Source:ZFIN;Acc:ZDB-GENE-081104-298]
59. tmco1 ENSDARG00000069099, ENSDARG00000113013 4698 0.999 - - - - - - 0.999 - - transmembrane and coiled-coil domains 1 [Source:ZFIN;Acc:ZDB-GENE-050417-344]
60. hoxc10a ENSDARG00000070348 2323 0.999 - - - - - - 0.999 - - homeobox C10a [Source:ZFIN;Acc:ZDB-GENE-990415-110]
61. cx44.1 cx44.1 799 0.999 - - - - - - 0.999 - -
62. PREX2 ENSDARG00000071692 827 0.999 - - - - - - 0.999 - - phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 [Source:ZFIN;Acc:ZDB-GENE-091113-37]
63. lepre1 lepre1 5346 0.999 - - - - - - 0.999 - -
64. aldh7a1 ENSDARG00000018426 4637 0.999 - - - - - - 0.999 - - aldehyde dehydrogenase 7 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-6129]
65. si:ch211-32p8.1 si:ch211-32p8.1 3402 0.999 - - - - - - 0.999 - -
66. slc7a4 ENSDARG00000068286 1693 0.999 - - - - - - 0.999 - - solute carrier family 7, member 4 [Source:ZFIN;Acc:ZDB-GENE-030919-2]
67. cenpf ENSDARG00000055133 5267 0.999 - - - - - - 0.999 - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
68. ttll4 ENSDARG00000078935 1663 0.999 - - - - - - 0.999 - - tubulin tyrosine ligase-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-313]
69. si:dkey-184p9.7 ENSDARG00000092726 2679 0.999 - - - - - - 0.999 - - si:dkey-184p9.7 [Source:ZFIN;Acc:ZDB-GENE-091204-97]
70. CCNA2 ENSDARG00000011094 3996 0.999 - - - - - - 0.999 - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
71. thumpd3 ENSDARG00000059634, ENSDARG00000113066 7065 0.999 - - - - - - 0.999 - - THUMP domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9745]
72. FAT1 FAT1 689 0.999 - - - - - - 0.999 - -
73. pinx1 ENSDARG00000023532 4452 0.999 - - - - - - 0.999 - - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
74. CR388095.3 CR388095.3 2548 0.999 - - - - - - 0.999 - -
75. gcn1l1 gcn1l1 6031 0.999 - - - - - - 0.999 - -
76. slc4a2b ENSDARG00000052330 1900 0.999 - - - - - - 0.999 - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
77. rfxap ENSDARG00000076891 1299 0.999 - - - - - - 0.999 - - regulatory factor X-associated protein [Source:ZFIN;Acc:ZDB-GENE-091204-321]
78. plagl2 ENSDARG00000076657 2057 0.999 - - - - - - 0.999 - - pleiomorphic adenoma gene-like 2 [Source:ZFIN;Acc:ZDB-GENE-020806-1]
79. TSG101 TSG101 1686 0.999 - - - - - - 0.999 - -
80. pdlim5b ENSDARG00000027600 4252 0.999 - - - - - - 0.999 - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
81. fam160a1 fam160a1 1445 0.999 - - - - - - 0.999 - -
82. rtf1 ENSDARG00000008947 6596 0.999 - - - - - - 0.999 - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
83. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 0.999 - - - - - - 0.999 - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
84. CR847934.1 CR847934.1 2658 0.999 - - - - - - 0.999 - -
85. dct ENSDARG00000006008 2466 0.998 - - - - - - 0.998 - - dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-000508-1]
86. lhfpl2b_1 ENSDARG00000098153 1596 0.998 - - - - - - 0.998 - - LHFPL tetraspan subfamily member 2b [Source:ZFIN;Acc:ZDB-GENE-050417-10]
87. alcamb ENSDARG00000058538 5672 0.998 - - - - - - 0.998 - - activated leukocyte cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-030131-1768]
88. cep170a cep170a 652 0.997 0.997 - - - - - - - -
89. atp6ap1b ENSDARG00000037153 3970 0.997 - - - - - - 0.997 - - ATPase H+ transporting accessory protein 1b [Source:ZFIN;Acc:ZDB-GENE-020423-2]
90. si:ch211-51e12.7 ENSDARG00000045914 9598 0.997 - - - - - - 0.997 - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
91. lfng ENSDARG00000037879 11783 0.997 - - - - - - 0.997 - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
92. whsc1 1701 0.997 0.997 - - - - - - - - Wolf-Hirschhorn syndrome candidate 1
93. mocs2 ENSDARG00000077202, ENSDARG00000114592, ENSDARG00000114882 942 0.997 0.997 - - - - - - - - molybdenum cofactor synthesis 2 [Source:ZFIN;Acc:ZDB-GENE-110411-53]
94. tmem106bb ENSDARG00000035949, ENSDARG00000113700 1415 0.997 0.997 - - - - - - - - transmembrane protein 106Bb [Source:ZFIN;Acc:ZDB-GENE-050913-37]
95. mnx1 ENSDARG00000035984, ENSDARG00000109419 1014 0.997 0.997 - - - - - - - - motor neuron and pancreas homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040409-1]
96. ABHD12B ABHD12B 1877 0.996 - - - - - - 0.996 - -
97. daam2 ENSDARG00000028393 226 0.996 0.996 - - - - - - - - dishevelled associated activator of morphogenesis 2 [Source:ZFIN;Acc:ZDB-GENE-070709-1]
98. SUSD4 ENSDARG00000026335 195 0.996 0.996 - - - - - - - - sushi domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-110511-1]
99. tctex1d1 ENSDARG00000103545 409 0.996 0.996 - - - - - - - - Tctex1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-49]
100. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 0.996 0.996 - - - - - - - - GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]

There are 923 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA