Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for runx3

Gene Name Gene ID Reads Annotation
runx3 ENSDARG00000052826 247 runt-related transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-000605-2]










Genes with expression patterns similar to runx3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. runx3 ENSDARG00000052826 247 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 runt-related transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-000605-2]
2. nptx1l ENSDARG00000074671 569 3.255 0.764 0.905 0.701 - - 0.885 - - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
3. KCNAB2 KCNAB2 129 3.084 0.849 0.751 - - - 0.760 - 0.724 -
4. mettl5 ENSDARG00000068893 159 2.585 - 0.892 - 0.849 - - 0.844 - - methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
5. si:dkey-245p14.4 ENSDARG00000070320 418 2.582 0.867 0.887 - - - 0.828 - - - si:dkey-245p14.4 [Source:ZFIN;Acc:ZDB-GENE-061207-63]
6. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.531 0.754 0.911 - - - 0.866 - - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
7. atp2b3b ENSDARG00000023445 1424 2.432 0.850 - - - - 0.866 0.716 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
8. ENSDARG00000086878 ENSDARG00000086878 332 2.403 - 0.892 - 0.731 - 0.780 - - -
9. htr3a ENSDARG00000089212 51 2.402 0.874 0.751 - - - 0.777 - - - 5-hydroxytryptamine (serotonin) receptor 3A [Source:ZFIN;Acc:ZDB-GENE-071012-5]
10. calb1 ENSDARG00000031598 252 2.392 0.855 0.751 - - - 0.786 - - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
11. TRPC4_1 TRPC4_1 212 2.386 - 0.751 - - - 0.787 0.848 - -
12. BEGAIN BEGAIN 39 2.383 0.824 - - - - - 0.848 0.711 -
13. pou4f2 ENSDARG00000069737 451 2.381 0.888 0.733 - - - 0.760 - - - POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
14. zic1 ENSDARG00000015567 2520 2.372 0.734 0.730 - - - 0.908 - - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
15. TUBB2A TUBB2A 142 2.366 0.860 0.751 - - - 0.755 - - -
16. ksr2 ENSDARG00000094526 134 2.364 - 0.814 - - - 0.802 0.748 - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
17. si:dkey-100n10.2 101 2.358 0.737 - - - - 0.812 0.809 - - si:dkey-100n10.2
18. FUT9 FUT9 91 2.349 0.824 0.751 - - - - 0.774 - -
19. ATP6AP1L ATP6AP1L 164 2.321 0.833 - - - - - 0.742 0.746 -
20. MCF2L2 ENSDARG00000079742 52 2.314 0.720 0.751 - - - - 0.843 - - MCF.2 cell line derived transforming sequence-like 2 [Source:ZFIN;Acc:ZDB-GENE-100812-1]
21. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.31 0.758 - - - - 0.839 0.713 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
22. MAP4 MAP4 315 2.308 - 0.781 - - - 0.793 0.734 - -
23. zgc:113307 ENSDARG00000044894 17 2.307 0.824 0.751 - - - 0.732 - - - zgc:113307 [Source:ZFIN;Acc:ZDB-GENE-050522-29]
24. syt11a ENSDARG00000057913 1145 2.298 0.729 0.780 - - - 0.789 - - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
25. CLDN20 26 2.296 0.824 0.751 - - - 0.721 - - - claudin 20, transcript variant X2
26. slc1a2b ENSDARG00000102453 3136 2.292 0.793 0.736 - - - 0.763 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
27. CT025910.1 CT025910.1 143 2.27 - 0.751 0.705 - - 0.814 - - -
28. scdb ENSDARG00000030265 271 2.26 0.750 0.737 - - - 0.773 - - - stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]
29. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 2.226 0.718 0.740 - 0.768 - - - - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
30. stx1b ENSDARG00000000503 2724 2.113 0.707 0.701 - - - 0.705 - - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
31. CR388231.1 ENSDARG00000098710 153 1.708 - - - - - 0.861 0.847 - -
32. fam175b fam175b 37 1.705 - - 0.758 - - - 0.947 - -
33. hspb15 ENSDARG00000078411 6 1.698 - 0.751 - - - - 0.947 - - heat shock protein, alpha-crystallin-related, b15 [Source:ZFIN;Acc:ZDB-GENE-080214-5]
34. adarb1a ENSDARG00000041609 476 1.693 - - - 0.861 - 0.832 - - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
35. syt9a ENSDARG00000003994 298 1.692 0.826 - - - - 0.866 - - - synaptotagmin IXa [Source:ZFIN;Acc:ZDB-GENE-031002-18]
36. entpd3 ENSDARG00000035309 263 1.69 - 0.893 - - - 0.797 - - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
37. si:ch211-11c15.3 si:ch211-11c15.3 1279 1.689 0.872 - - - - 0.817 - - -
38. fzd9b ENSDARG00000014673, ENSDARG00000116739 155 1.678 0.834 - - - - - 0.844 - - frizzled class receptor 9b [Source:ZFIN;Acc:ZDB-GENE-000906-4]
39. si:dkey-199m13.8 si:dkey-199m13.8 61 1.672 0.824 - - - - - 0.848 - -
40. TUSC5 TUSC5 1436 1.669 0.790 - - - - 0.879 - - -
41. chrna2a ENSDARG00000006602 163 1.666 - - 0.820 - - - 0.846 - - cholinergic receptor, nicotinic, alpha 2a (neuronal) [Source:ZFIN;Acc:ZDB-GENE-040108-2]
42. mdkb ENSDARG00000020708 5393 1.665 0.802 - - - - 0.863 - - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
43. zic2b ENSDARG00000037178, ENSDARG00000112354 993 1.665 0.788 - - - - 0.877 - - - zic family member 2 (odd-paired homolog, Drosophila) b [Source:ZFIN;Acc:ZDB-GENE-030219-92]
44. stmn2a ENSDARG00000033234 2272 1.662 0.796 - - - - 0.866 - - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
45. FAXC FAXC 102 1.659 0.824 - - - - - 0.835 - -
46. si:dkey-235h8.1 si:dkey-235h8.1 2457 1.654 - - - - - 0.806 0.848 - -
47. ascc2 ENSDARG00000013058 228 1.651 - 0.751 - 0.900 - - - - - activating signal cointegrator 1 complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1223]
48. gnb5b ENSDARG00000055377 98 1.646 - 0.892 - - - - 0.754 - - guanine nucleotide binding protein (G protein), beta 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1712]
49. hs3st3l ENSDARG00000059903 184 1.646 0.829 - - - - 0.817 - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [Source:ZFIN;Acc:ZDB-GENE-070202-6]
50. lhx5 ENSDARG00000057936 785 1.644 0.777 - - - - 0.867 - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
51. ppp2r2ba 321 1.643 - - - 0.864 - 0.779 - - - protein phosphatase 2, regulatory subunit B, beta a, transcript variant X2
52. wnt11r ENSDARG00000014796 2860 1.634 0.763 - - - - 0.871 - - - wingless-type MMTV integration site family, member 11, related [Source:ZFIN;Acc:ZDB-GENE-980526-249]
53. slc1a1 ENSDARG00000020212 104 1.634 0.867 - - - - 0.767 - - - solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:ZFIN;Acc:ZDB-GENE-040718-414]
54. cbln1 ENSDARG00000057296 165 1.631 0.863 - - - - 0.768 - - - cerebellin 1 precursor [Source:ZFIN;Acc:ZDB-GENE-040718-226]
55. TTBK1_1 TTBK1_1 132 1.628 - - - - - 0.852 0.776 - -
56. atpv0e2 ENSDARG00000059057 585 1.626 0.844 - - - - 0.782 - - - ATPase H+ transporting V0 subunit e2 [Source:ZFIN;Acc:ZDB-GENE-050522-135]
57. FAM196A 82 1.624 - 0.832 - - - - 0.792 - - family with sequence similarity 196 member A
58. cacng3b ENSDARG00000076401 91 1.623 0.872 0.751 - - - - - - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
59. kif3cb ENSDARG00000079500 935 1.623 - - - - - 0.775 0.848 - - kinesin family member 3Cb [Source:ZFIN;Acc:ZDB-GENE-080709-4]
60. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 1.62 0.782 - - - - 0.838 - - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
61. thbs3b ENSDARG00000012060 922 1.619 0.867 - - - - 0.752 - - - thrombospondin 3b [Source:ZFIN;Acc:ZDB-GENE-060503-84]
62. CU694372.1 ENSDARG00000097988 105 1.618 - - - 0.898 - - - 0.720 -
63. pcloa ENSDARG00000063299 353 1.616 0.898 - - - - - 0.718 - - piccolo presynaptic cytomatrix protein a [Source:ZFIN;Acc:ZDB-GENE-030131-8115]
64. zic3 ENSDARG00000071497 1448 1.616 - - - - - 0.803 0.813 - - zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030708-2]
65. SV2B SV2B 208 1.615 0.791 - - - - 0.824 - - -
66. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 1.612 0.859 - - - - 0.753 - - - zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
67. nrn1a ENSDARG00000071860 1311 1.61 0.805 - - - - 0.805 - - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
68. phyhipla ENSDARG00000003998, ENSDARG00000115785 262 1.606 0.762 - - - - 0.844 - - - phytanoyl-CoA 2-hydroxylase interacting protein-like a [Source:ZFIN;Acc:ZDB-GENE-061215-64]
69. si:ch73-257c13.2 ENSDARG00000074305 197 1.605 0.738 - - 0.867 - - - - - si:ch73-257c13.2 [Source:ZFIN;Acc:ZDB-GENE-081104-269]
70. ndrg4 ENSDARG00000103937 1234 1.603 0.848 - - - - 0.755 - - - NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
71. CR391967.1 CR391967.1 135 1.599 - 0.751 - - - - 0.848 - -
72. si:ch211-113a14.19_4 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 18 1.599 - 0.751 - - - - 0.848 - - si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
73. ptf1a ENSDARG00000014479 349 1.599 - 0.751 - - - - 0.848 - - pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
74. aplp1 ENSDARG00000098368 2317 1.597 0.795 - - - - 0.802 - - - amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
75. rtn4r ENSDARG00000090035 46 1.595 0.824 - - - - - 0.771 - - reticulon 4 receptor [Source:ZFIN;Acc:ZDB-GENE-040310-1]
76. rbfox3 rbfox3 1443 1.593 0.771 0.822 - - - - - - -
77. lgi3 ENSDARG00000041358 46 1.591 - - - - - 0.817 0.774 - - leucine-rich repeat LGI family, member 3 [Source:ZFIN;Acc:ZDB-GENE-060217-4]
78. TUSC5_1 TUSC5_1 320 1.59 0.750 - - - - 0.840 - - -
79. dtnbb ENSDARG00000013020 280 1.589 - - - - - 0.840 0.749 - - dystrobrevin, beta b [Source:ZFIN;Acc:ZDB-GENE-070117-3]
80. DLK1 60 1.587 0.824 - - - - 0.763 - - - delta like non-canonical Notch ligand 1
81. ankrd37 ENSDARG00000056376 131 1.585 0.834 0.751 - - - - - - - ankyrin repeat domain 37 [Source:ZFIN;Acc:ZDB-GENE-070308-1]
82. synpo2b ENSDARG00000077157 1009 1.585 - 0.732 0.853 - - - - - - synaptopodin 2b [Source:ZFIN;Acc:ZDB-GENE-101230-1]
83. DENND6A DENND6A 648 1.582 - 0.812 - - - 0.770 - - -
84. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.581 - - - - - 0.746 0.835 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
85. 5S_rRNA_22 5S_rRNA_22 45 1.581 0.824 - - - - - 0.757 - -
86. CABZ01021433.1 ENSDARG00000105696 74 1.58 0.824 - - - 0.756 - - - - si:cabz01021433.2 [Source:NCBI gene;Acc:100333857]
87. kctd16a ENSDARG00000004648, ENSDARG00000114292, ENSDARG00000117199 80 1.578 0.861 - - - - 0.717 - - - potassium channel tetramerization domain containing 16a [Source:ZFIN;Acc:ZDB-GENE-060117-1]
88. MAP1A MAP1A 847 1.576 0.789 - - - - 0.787 - - -
89. KCNS3 KCNS3 82 1.576 - 0.751 - - - 0.825 - - -
90. zgc:113210 ENSDARG00000002872 99 1.575 0.824 0.751 - - - - - - - zgc:113210 [Source:ZFIN;Acc:ZDB-GENE-050320-83]
91. si:dkey-200l5.4 ENSDARG00000095294 13 1.575 0.824 0.751 - - - - - - - si:dkey-200l5.4 [Source:ZFIN;Acc:ZDB-GENE-091204-393]
92. CABZ01084273.1 CABZ01084273.1 16 1.575 0.824 0.751 - - - - - - -
93. cdk10 ENSDARG00000034256 166 1.572 - 0.856 - - - 0.716 - - - cyclin-dependent kinase 10 [Source:ZFIN;Acc:ZDB-GENE-050417-94]
94. gabrg2 ENSDARG00000053665 434 1.572 0.757 - - 0.815 - - - - - gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65]
95. KCNJ3_1 KCNJ3_1 30 1.57 0.824 - - - - 0.746 - - -
96. slc17a6b ENSDARG00000041150 823 1.569 - 0.751 - - - 0.818 - - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
97. zic4 ENSDARG00000031307 1228 1.568 - - - - - 0.779 0.789 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
98. CABZ01065506.1 CABZ01065506.1 204 1.568 0.824 - - - - 0.744 - - -
99. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.568 - - - - - 0.825 0.743 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
100. adcyap1b ENSDARG00000027740 1539 1.567 0.788 - - - - 0.779 - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]

There are 2052 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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