Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rufy3

Gene Name Gene ID Reads Annotation
rufy3 ENSDARG00000029692 3031 RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]










Genes with expression patterns similar to rufy3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rufy3 ENSDARG00000029692 3031 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
2. pcdh1gc5 ENSDARG00000104826 10052 3.453 0.867 - - - - 0.759 0.867 - 0.960 protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
3. rbfox3 rbfox3 1443 3.302 0.818 0.819 - - - 0.833 0.832 - -
4. gng3 ENSDARG00000009553 2530 3.274 0.872 0.748 - - - 0.796 0.858 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
5. stx1b ENSDARG00000000503 2724 3.205 0.795 0.722 - - - 0.844 0.844 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
6. scrt2 ENSDARG00000056175 4331 3.13 0.866 0.736 - - - 0.753 0.775 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
7. nrarpb ENSDARG00000018958 6225 3.126 0.729 0.743 - - - 0.783 0.871 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
8. slc1a2b ENSDARG00000102453 3136 3.112 0.760 0.705 - - - 0.835 0.812 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
9. amph ENSDARG00000007663 599 3.089 0.839 0.733 - - - 0.707 0.810 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
10. MCTP1 MCTP1 219 3.009 0.758 0.720 - - - 0.806 0.725 - -
11. si:ch211-152f6.6 si:ch211-152f6.6 278 2.997 0.771 0.732 - - - 0.755 0.739 - -
12. rtn1b ENSDARG00000021143 1682 2.992 0.752 0.768 - - - 0.700 0.772 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
13. AGO1 ENSDARG00000092644 4521 2.637 0.883 - - - - 0.862 0.892 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
14. cspg5a ENSDARG00000069981 1699 2.603 0.879 - - - - 0.863 0.861 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
15. ckbb ENSDARG00000043257 3503 2.591 0.834 - - - - 0.861 0.896 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
16. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 2.563 - - - - - 0.786 0.793 - 0.984 TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
17. IGLON5 ENSDARG00000022176 1353 2.547 - - - - - 0.719 0.829 - 0.999 IgLON family member 5 [Source:HGNC Symbol;Acc:HGNC:34550]
18. dpysl3 ENSDARG00000002587 4381 2.547 0.815 - - - - 0.881 0.851 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
19. tuba1c ENSDARG00000055216 8384 2.547 0.859 - - - - 0.832 0.856 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
20. cdc25 cdc25 3913 2.54 - - - - - 0.753 0.788 - 0.999
21. epha4b ENSDARG00000011600 3110 2.537 0.852 - - - - 0.846 0.839 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
22. nova2 ENSDARG00000017673 7685 2.535 0.831 - - - - 0.843 0.861 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
23. CABZ01111990.1 CABZ01111990.1 4374 2.524 0.795 - - - - 0.846 0.883 - -
24. dnajc5aa ENSDARG00000042948 2885 2.522 0.812 - - - - 0.869 0.841 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
25. rab3ab ENSDARG00000043835 1267 2.522 0.861 - - - - 0.799 0.862 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
26. clstn3 ENSDARG00000073883 590 2.5 0.835 - - - - 0.862 0.803 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
27. slc8a2b ENSDARG00000100592 598 2.495 0.803 - - - - 0.838 0.854 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
28. UBE2QL1 ENSDARG00000079276 3474 2.491 0.871 - - - - 0.822 0.798 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
29. SPOCK1 ENSDARG00000074644 794 2.491 0.754 - - - - 0.876 0.861 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
30. C8H1orf106 C8H1orf106 2690 2.49 0.840 - - - - 0.822 0.828 - -
31. nes ENSDARG00000088805 2710 2.489 0.810 - - - - 0.815 0.864 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
32. irx1b ENSDARG00000056594 2224 2.488 0.842 - - - - 0.793 0.853 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
33. gfap ENSDARG00000025301 5584 2.486 0.835 - - - - 0.781 0.870 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
34. vgf ENSDARG00000105529 247 2.485 0.788 - - - - 0.821 0.876 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
35. cadpsb ENSDARG00000070567 458 2.484 0.769 - - - - 0.862 0.853 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
36. EPB41L1 EPB41L1 1896 2.483 0.844 - - - - 0.815 0.824 - -
37. ZFHX3 ENSDARG00000103057 7759 2.482 0.820 - - - - 0.837 0.825 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
38. hmgb3a ENSDARG00000056725 15668 2.479 0.867 - - - - 0.783 0.829 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
39. reep2 ENSDARG00000031382, ENSDARG00000112622 563 2.477 0.796 - - - - 0.786 - 0.895 - receptor accessory protein 2 [Source:ZFIN;Acc:ZDB-GENE-050706-125]
40. her2 ENSDARG00000038205 3219 2.474 0.866 - - - - 0.760 0.848 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
41. tmem35 ENSDARG00000052567 5685 2.466 0.845 - - - - 0.765 0.856 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
42. kcnc3a ENSDARG00000055855 1821 2.464 0.817 - - - - 0.812 0.835 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
43. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.456 0.833 - - - - 0.829 0.794 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
44. neurog1 ENSDARG00000056130 3924 2.456 0.782 - - - - 0.800 0.874 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
45. TUBB8P7_1 TUBB8P7_1 2722 2.456 0.781 - - - - 0.809 0.866 - -
46. vsnl1a ENSDARG00000023228 1584 2.454 0.820 - - - - 0.712 0.922 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
47. gap43 ENSDARG00000099744 4114 2.454 0.832 - - - - 0.796 0.826 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
48. EFCC1 ENSDARG00000077826 1359 2.453 0.812 - - - - 0.808 0.833 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
49. hoxa9b ENSDARG00000056819 3081 2.451 0.742 - - - - 0.851 0.858 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
50. slc1a3a ENSDARG00000104431 9888 2.449 0.854 - - - - 0.776 0.819 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
51. msi1 ENSDARG00000010710 2634 2.449 0.804 - - - - 0.806 0.839 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
52. snap25a ENSDARG00000020609 4537 2.448 0.825 - - - - 0.783 0.840 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
53. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.445 0.838 - - - - 0.775 0.832 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
54. neflb ENSDARG00000012426 298 2.444 - 0.746 - - - 0.823 0.875 - - neurofilament, light polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060312-44]
55. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.443 0.862 - - - - 0.730 0.851 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
56. CHL1 CHL1 1553 2.441 0.807 - - - - 0.865 0.769 - -
57. GLRA3 ENSDARG00000011066 242 2.438 0.827 - - - - 0.756 0.855 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
58. dbx2 2971 2.437 0.734 - - - - 0.846 0.857 - - developing brain homeobox 2
59. slc35g2b ENSDARG00000045447 378 2.437 0.769 - - - - 0.837 0.831 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
60. syngr3a ENSDARG00000014871 405 2.429 0.778 - - - - 0.844 0.807 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
61. bhlhe22 ENSDARG00000058039 1673 2.425 0.810 - - - - 0.783 0.832 - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
62. nbeaa ENSDARG00000070080 862 2.421 0.791 - - - - 0.803 0.827 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
63. scn2b ENSDARG00000101713 796 2.418 - 0.733 - - - 0.803 0.882 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
64. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.418 0.722 - - - - 0.864 0.832 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
65. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.411 0.747 - - - - 0.789 0.875 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
66. adam23a ENSDARG00000062323 580 2.409 0.820 - - - - 0.755 0.834 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
67. pou4f1 ENSDARG00000005559 821 2.407 0.760 - - - - 0.781 0.866 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
68. negr1 ENSDARG00000021607 1051 2.406 0.853 - - - - 0.790 0.763 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
69. mllt11 ENSDARG00000071026 2518 2.404 0.773 - - - - 0.767 0.864 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
70. vim ENSDARG00000010008 3551 2.401 0.811 - - - - 0.801 0.789 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
71. sypb ENSDARG00000002230 262 2.401 0.712 - - - - 0.854 0.835 - - synaptophysin b [Source:ZFIN;Acc:ZDB-GENE-040718-205]
72. lgi1a ENSDARG00000020493 1218 2.398 - 0.732 - - - 0.854 0.812 - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
73. sept5a ENSDARG00000013843 1206 2.397 0.790 - - - - 0.789 0.818 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
74. nefmb ENSDARG00000043697 2052 2.397 0.751 - - - - 0.863 0.783 - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
75. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.396 0.778 - - - - 0.751 0.867 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
76. rusc1 ENSDARG00000078125 617 2.394 0.731 - - - - 0.860 0.803 - - RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
77. tubb5 ENSDARG00000037997 18691 2.393 0.816 - - - - - 0.836 0.741 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
78. hoxa3a ENSDARG00000103862 2239 2.393 0.843 0.706 - - - - 0.844 - - homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
79. syt11b ENSDARG00000056105 578 2.393 - 0.750 - - - 0.833 0.810 - - synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
80. nadl1.1 1200 2.392 0.743 - - - - 0.771 0.878 - - neural adhesion molecule L1.1, transcript variant X1
81. scn8aa ENSDARG00000005775 792 2.388 0.738 - - - - 0.853 0.797 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
82. syt11a ENSDARG00000057913 1145 2.385 0.769 0.748 - - - - 0.868 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
83. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 2.375 0.739 - - - - 0.818 0.818 - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
84. ctnnd2b ENSDARG00000003779 964 2.374 0.760 - - - - 0.759 0.855 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
85. si:ch73-21g5.7 ENSDARG00000093156 9412 2.372 0.768 0.734 - - - - 0.870 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
86. sncb ENSDARG00000104945 8197 2.371 0.753 0.807 - - - 0.811 - - - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
87. tmem59l ENSDARG00000003655 1536 2.37 0.789 - - - - 0.783 0.798 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
88. FP016176.1 FP016176.1 7030 2.369 0.719 - - - - 0.791 0.859 - -
89. STMN3 ENSDARG00000038465 1009 2.368 0.742 - - - - 0.771 0.855 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
90. slc32a1 ENSDARG00000059775 1092 2.366 0.807 - - - - 0.747 0.812 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
91. NTRK3 NTRK3 163 2.365 0.842 0.746 - - - - 0.777 - -
92. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.364 0.769 - - - - 0.836 0.759 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
93. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.364 0.830 - - - - 0.753 0.781 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
94. SYT2 ENSDARG00000014169 265 2.364 0.788 - - - - 0.839 0.737 - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
95. necap1 ENSDARG00000020798 612 2.363 0.798 - - - - 0.709 0.856 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
96. pax6a ENSDARG00000103379 3061 2.363 0.718 - - - - 0.837 0.808 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
97. tox ENSDARG00000032317 9126 2.363 0.753 - - - - 0.769 0.841 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
98. tmie ENSDARG00000069423 305 2.362 0.796 - - - - 0.721 0.845 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
99. snap25b ENSDARG00000058117 469 2.36 0.799 - - - - 0.764 0.797 - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
100. marcksa ENSDARG00000004049 2518 2.353 - 0.818 - - - 0.793 0.742 - - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]

There are 1703 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA