Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rtn4a

Gene Name Gene ID Reads Annotation
rtn4a ENSDARG00000044601, ENSDARG00000112237 24526 reticulon 4a [Source:ZFIN;Acc:ZDB-GENE-030710-1]










Genes with expression patterns similar to rtn4a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rtn4a ENSDARG00000044601, ENSDARG00000112237 24526 8 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 reticulon 4a [Source:ZFIN;Acc:ZDB-GENE-030710-1]
2. CR847973.1 ENSDARG00000115516 8754 3.164 0.775 - - 0.823 - - - 0.709 0.857
3. cnbpb ENSDARG00000070922 14606 3.091 0.722 0.816 - 0.786 - - - - 0.767 CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
4. mybpc2b ENSDARG00000021265 9618 2.951 0.716 - - 0.755 - - - 0.742 0.738 myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
5. mybpc3 ENSDARG00000011615 7271 2.466 - - - - - - 0.963 0.713 0.790 myosin binding protein C, cardiac [Source:ZFIN;Acc:ZDB-GENE-070112-2362]
6. casq2 ENSDARG00000008982 21802 2.386 0.723 - - 0.854 - - - 0.809 - calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
7. atp2a1 ENSDARG00000020574 291561 2.349 - - - 0.824 - - - 0.771 0.754 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
8. nexn ENSDARG00000057317 10972 2.346 0.735 0.842 - - - - - - 0.769 nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
9. jph2 ENSDARG00000028625 6706 2.341 - - - 0.773 - - - 0.750 0.818 junctophilin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9848]
10. srl ENSDARG00000104587 11126 2.33 0.786 - - 0.834 - - - 0.710 - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
11. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 27188 2.324 0.728 - - 0.748 - - - - 0.848 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
12. murca murca 6614 2.318 0.756 0.856 - 0.706 - - - - -
13. murcb murcb 13655 2.304 0.751 - - 0.832 - - - 0.721 -
14. CR354540.2 ENSDARG00000117517 18452 2.3 0.733 - - 0.775 - - - - 0.792
15. SYNPO2L SYNPO2L 6697 2.278 0.733 - - 0.753 - - - - 0.792
16. cap2 ENSDARG00000104478 3266 2.228 0.732 - - 0.711 - - - - 0.785 CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
17. si:ch211-156j16.1 ENSDARG00000092035 7441 2.227 0.747 - - 0.758 - - - - 0.722 si:ch211-156j16.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4106]
18. atp5g1 51897 2.214 0.711 - - 0.708 - - - - 0.795 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
19. znf106a ENSDARG00000016651 6049 2.202 0.704 - - 0.737 - - - - 0.761 zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
20. vbp1 ENSDARG00000030241 10619 1.777 0.812 - - - - - 0.965 - - von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
21. rpl39 ENSDARG00000036316, ENSDARG00000117167 80631 1.747 0.781 - - - - - 0.966 - - ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
22. atp2a1l ENSDARG00000035458 6222 1.737 - - - - - - 0.992 - 0.745 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like [Source:ZFIN;Acc:ZDB-GENE-041229-2]
23. smyd2b ENSDARG00000005629 8181 1.728 - - - - - - 0.963 - 0.765 SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
24. rps13 ENSDARG00000036298, ENSDARG00000112818 58520 1.689 - 0.718 - - - - 0.971 - - ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
25. si:ch211-226o13.2 84923 1.68 - - - 0.828 - - - - 0.852 si:ch211-226o13.2
26. neb ENSDARG00000032630, ENSDARG00000109273 19493 1.674 - - - 0.865 - - - - 0.809 nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
27. sdprb sdprb 13647 1.661 - 0.704 - - - - 0.957 - -
28. tmod4 ENSDARG00000020890 17436 1.65 - - - 0.830 - - - - 0.820 tropomodulin 4 (muscle) [Source:ZFIN;Acc:ZDB-GENE-991019-9]
29. col11a1a ENSDARG00000026165, ENSDARG00000115341 43138 1.636 0.702 - - - - - 0.934 - - collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
30. tegt ENSDARG00000077934 27182 1.634 - 0.706 - - - - 0.928 - - testis enhanced gene transcript (BAX inhibitor 1) [Source:ZFIN;Acc:ZDB-GENE-030826-10]
31. actn3a ENSDARG00000013755, ENSDARG00000111128 22706 1.633 0.784 - - 0.849 - - - - - actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
32. eno3 ENSDARG00000039007 11355 1.593 - - - 0.751 - - - - 0.842 enolase 3, (beta, muscle) [Source:ZFIN;Acc:ZDB-GENE-031006-5]
33. tnnt2d ENSDARG00000002988 7590 1.592 - - - 0.815 - - - - 0.777 troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
34. rpl10a ENSDARG00000042905, ENSDARG00000115649 202994 1.587 0.754 - - - - - 0.833 - - ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
35. myoz1b ENSDARG00000071445 13381 1.583 - - - 0.757 - - - - 0.826 myozenin 1b [Source:ZFIN;Acc:ZDB-GENE-040718-146]
36. rps27.1 ENSDARG00000023298 86382 1.576 0.738 0.838 - - - - - - - ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
37. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 1.567 0.781 - - 0.786 - - - - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
38. ttnb ttnb 73721 1.565 - - - 0.865 - - - - 0.700
39. vdac2 ENSDARG00000013623 37765 1.562 - - - - - - 0.708 - 0.854 voltage-dependent anion channel 2 [Source:ZFIN;Acc:ZDB-GENE-030131-845]
40. smtnl1 ENSDARG00000041257 7410 1.561 0.733 0.828 - - - - - - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
41. hhatla ENSDARG00000039051 6598 1.56 - - - 0.734 - - - - 0.826 hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
42. cfl2 ENSDARG00000014106 8051 1.558 - - - 0.774 - - - - 0.784 cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
43. tnnt3a ENSDARG00000030270 112506 1.558 - - - 0.710 - - - - 0.848 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
44. PTPLA PTPLA 4044 1.55 0.765 - - - - - - - 0.785
45. ank1 ank1 5209 1.548 - - - 0.747 - - - - 0.801
46. SPEG SPEG 4017 1.545 - - - 0.827 - - - - 0.718
47. pvalb4 ENSDARG00000024433 35736 1.542 0.707 - - 0.835 - - - - - parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
48. prx ENSDARG00000017246 6183 1.531 - - - 0.759 - - - - 0.772 periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
49. tpma ENSDARG00000033683 752432 1.529 - - - 0.807 - - - 0.722 - alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
50. klhl31 ENSDARG00000039066 13656 1.529 - - - 0.742 - - - - 0.787 kelch-like family member 31 [Source:ZFIN;Acc:ZDB-GENE-030131-2052]
51. tmem161a ENSDARG00000012790 16094 1.525 0.709 - - - - - - - 0.816 transmembrane protein 161A [Source:ZFIN;Acc:ZDB-GENE-041111-267]
52. actn3b ENSDARG00000001431 15747 1.52 0.728 - - 0.792 - - - - - actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
53. SYNPO2 SYNPO2 7382 1.512 - - - 0.709 - - - - 0.803
54. tnnt3b ENSDARG00000068457 101827 1.505 - - - 0.793 - - - 0.712 - troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
55. trdn ENSDARG00000041779 4283 1.492 0.722 - - - - - - - 0.770 triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
56. BX324201.1 BX324201.1 3302 1.492 0.741 - - - - - - - 0.751
57. pabpc4 ENSDARG00000059259, ENSDARG00000111312 2392 1.484 0.748 - - - - - - - 0.736 poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
58. rpl14 ENSDARG00000103433 69914 1.482 - - - - 0.717 - 0.765 - - ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
59. EHBP1L1 EHBP1L1 2500 1.476 - - - 0.738 - - - - 0.738
60. ckma ENSDARG00000035327, ENSDARG00000114671 418792 1.476 - - - 0.739 - - - - 0.737 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
61. mdh1b ENSDARG00000018008 3196 1.474 0.702 - - - - - - - 0.772 malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
62. pygma ENSDARG00000055518 15972 1.467 0.757 - - - - - - 0.710 - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
63. tgm2a ENSDARG00000070157 4516 1.458 0.753 - - - - - - - 0.705 transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
64. si:ch211-114n24.7 si:ch211-114n24.7 2544 1.458 0.700 - - 0.758 - - - - -
65. mylz3 ENSDARG00000017441 303597 1.449 - - - 0.728 - - - - 0.721 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
66. tnni2a.4 ENSDARG00000029069 122344 1.449 0.723 - - - - - - 0.726 - troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
67. myod1 ENSDARG00000030110 6019 1.448 0.718 - - - - - - - 0.730 myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
68. dtnba ENSDARG00000077694 5483 1.444 0.739 - - 0.705 - - - - - dystrobrevin, beta a [Source:ZFIN;Acc:ZDB-GENE-030131-3967]
69. sar1ab ENSDARG00000033320 3984 1.439 0.722 - - 0.717 - - - - - secretion associated, Ras related GTPase 1Ab [Source:ZFIN;Acc:ZDB-GENE-050417-437]
70. stac3 ENSDARG00000098883 1765 1.435 0.725 - - 0.710 - - - - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
71. rpl21 ENSDARG00000010516, ENSDARG00000110263 152264 1.434 - - - - - 0.708 0.726 - - ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
72. casq1b ENSDARG00000018105 2643 1.434 - - - 0.726 - - - - 0.708 calsequestrin 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1070]
73. pbxip1a ENSDARG00000071015 4960 1.433 0.710 - - 0.723 - - - - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
74. atp5ib 19664 1.431 0.728 - - 0.703 - - - - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit Eb
75. actc1b ENSDARG00000099197 324665 1.425 - - - 0.717 - - - 0.708 - actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
76. tnni1al 8272 0.978 - - - - - - 0.978 - - troponin I, skeletal, slow like, transcript variant X1
77. pvalb3 ENSDARG00000022817, ENSDARG00000117131 4180 0.976 - - - - - - 0.976 - - parvalbumin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-945]
78. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 25449 0.972 - - - - - - 0.972 - - proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
79. rpl4 ENSDARG00000041182 18655 0.97 - - - - - - 0.970 - - ribosomal protein L4 [Source:ZFIN;Acc:ZDB-GENE-030131-9034]
80. rpsa ENSDARG00000019181 93440 0.966 - - - - - - 0.966 - - ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
81. selt2 12741 0.962 - - - - - - 0.962 - - selenoprotein T, 2
82. glulb ENSDARG00000100003, ENSDARG00000113742 19292 0.962 - - - - - - 0.962 - - glutamate-ammonia ligase (glutamine synthase) b [Source:ZFIN;Acc:ZDB-GENE-030131-8417]
83. hspe1 ENSDARG00000056167 21636 0.961 - - - - - - 0.961 - - heat shock 10 protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-2]
84. psmb1 ENSDARG00000009640 8628 0.96 - - - - - - 0.960 - - proteasome subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-040618-2]
85. kpnb1 ENSDARG00000104889 9282 0.96 - - - - - - 0.960 - - karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
86. si:dkeyp-13a3.7 si:dkeyp-13a3.7 3422 0.96 - - - - - - 0.960 - -
87. rhoad rhoad 8007 0.959 - - - - - - 0.959 - -
88. prmt5 ENSDARG00000079605, ENSDARG00000116785 4676 0.958 - - - - - - 0.958 - - protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
89. CR548630.1 CR548630.1 3301 0.958 - - - - - - 0.958 - -
90. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 0.958 - - - - - - 0.958 - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
91. srsf1a ENSDARG00000057691, ENSDARG00000111226 15525 0.958 - - - - - - 0.958 - - serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
92. map7d3 ENSDARG00000060771 1739 0.958 - - - - - - 0.958 - - MAP7 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-121129-3]
93. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 0.958 - - - - - - 0.958 - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
94. fam133b ENSDARG00000013863 5070 0.958 - - - - - - 0.958 - - family with sequence similarity 133, member B [Source:ZFIN;Acc:ZDB-GENE-060503-229]
95. clasp2 ENSDARG00000020345 3382 0.958 - - - - - - 0.958 - - cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
96. SEMA5B SEMA5B 1316 0.957 - - - - - - 0.957 - -
97. si:ch211-71n6.4 ENSDARG00000102234 2499 0.957 - - - - - - 0.957 - - si:ch211-71n6.4 [Source:ZFIN;Acc:ZDB-GENE-091204-213]
98. snx9b ENSDARG00000069302, ENSDARG00000116107 5673 0.957 - - - - - - 0.957 - - sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]
99. foxp1a ENSDARG00000004843 3961 0.957 - - - - - - 0.957 - - forkhead box P1a [Source:ZFIN;Acc:ZDB-GENE-060929-624]
100. sfrp5 ENSDARG00000039041 1777 0.957 - - - - - - 0.957 - - secreted frizzled-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-011108-2]

There are 326 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA