Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rtn1b

Gene Name Gene ID Reads Annotation
rtn1b ENSDARG00000021143 1682 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]










Genes with expression patterns similar to rtn1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rtn1b ENSDARG00000021143 1682 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
2. mllt11 ENSDARG00000071026 2518 4.982 0.881 0.779 - - - 0.977 0.839 0.755 0.751 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
3. gap43 ENSDARG00000099744 4114 4.928 0.832 0.756 - - - 0.943 0.891 0.729 0.777 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
4. si:ch73-21g5.7 ENSDARG00000093156 9412 4.11 0.792 0.813 - - - 0.899 0.893 0.713 - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
5. slc17a6b ENSDARG00000041150 823 4.012 0.717 0.783 - - - 0.948 0.862 - 0.702 solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
6. st18 663 3.973 - - - 0.705 - 0.951 0.875 0.716 0.726 suppression of tumorigenicity 18, zinc finger
7. nrxn2a ENSDARG00000061454 291 3.788 0.774 0.766 - - - 0.793 0.747 - 0.708 neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
8. syt11a ENSDARG00000057913 1145 3.588 0.916 0.852 - - - 0.937 0.883 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
9. TUBB8P7_1 TUBB8P7_1 2722 3.573 0.904 0.881 - - - 0.956 0.832 - -
10. pcsk1nl ENSDARG00000076170 1232 3.54 0.904 0.833 - - - 0.953 0.850 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
11. snap25a ENSDARG00000020609 4537 3.532 0.827 0.896 - - - 0.962 0.847 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
12. stx1b ENSDARG00000000503 2724 3.508 0.883 0.839 - - - 0.922 0.864 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
13. scn8aa ENSDARG00000005775 792 3.504 0.901 0.838 - - - 0.921 0.844 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
14. zic1 ENSDARG00000015567 2520 3.465 0.806 0.856 - - - 0.944 0.859 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
15. hpca ENSDARG00000018397, ENSDARG00000110115 3866 3.423 0.862 0.710 - - - 0.926 0.925 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
16. MAP1A MAP1A 847 3.421 0.892 0.753 - - - 0.966 0.810 - -
17. nadl1.1 1200 3.42 0.888 0.779 - - - 0.904 0.849 - - neural adhesion molecule L1.1, transcript variant X1
18. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 3.413 0.808 0.762 - - - 0.953 0.890 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
19. tuba1c ENSDARG00000055216 8384 3.413 0.819 - - - - 0.953 0.881 - 0.760 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
20. ppp3ca ENSDARG00000004988 615 3.4 0.880 0.731 - - - 0.919 0.870 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
21. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 3.389 0.909 0.734 - - - 0.969 0.777 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
22. scrt2 ENSDARG00000056175 4331 3.385 0.803 0.803 - - - 0.970 0.809 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
23. adam23a ENSDARG00000062323 580 3.383 0.805 0.765 - - - 0.938 0.875 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
24. stmn2a ENSDARG00000033234 2272 3.383 0.844 0.726 - - - 0.971 0.842 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
25. calb1 ENSDARG00000031598 252 3.381 0.797 0.783 - - - 0.880 0.921 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
26. amph ENSDARG00000007663 599 3.375 0.790 0.821 - - - 0.920 0.844 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
27. myt1b ENSDARG00000102879 5411 3.354 0.794 0.736 - - - 0.933 0.891 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
28. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 3.348 0.844 0.793 - - - 0.837 0.874 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
29. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 3.343 - 0.791 - - - 0.912 0.863 0.777 - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
30. fez1 ENSDARG00000023174 701 3.339 0.935 - - - - 0.907 0.779 0.718 - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
31. gng3 ENSDARG00000009553 2530 3.336 0.922 0.828 - - - 0.716 0.870 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
32. rbfox3 rbfox3 1443 3.336 0.760 0.851 - - - 0.875 0.850 - -
33. nova2 ENSDARG00000017673 7685 3.335 0.738 0.809 - - - 0.879 0.909 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
34. slc1a2b ENSDARG00000102453 3136 3.33 0.811 0.745 - - - 0.937 0.837 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
35. stmn2b ENSDARG00000070537 1586 3.326 0.859 - - 0.747 - 0.946 0.774 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
36. CLIP3 ENSDARG00000054456 734 3.309 0.891 - - 0.729 - 0.831 0.858 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
37. SPOCK1 ENSDARG00000074644 794 3.309 0.864 - - - - 0.831 0.878 - 0.736 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
38. C7H4orf48 C7H4orf48 1455 3.307 0.772 - - - - 0.957 0.861 0.717 -
39. SV2B SV2B 208 3.299 0.779 0.821 - - - 0.950 0.749 - -
40. aplp1 ENSDARG00000098368 2317 3.295 0.834 0.763 - - - 0.956 - - 0.742 amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
41. TUSC5 TUSC5 1436 3.281 0.780 0.745 - - - 0.957 0.799 - -
42. vsnl1a ENSDARG00000023228 1584 3.261 0.775 0.784 - - - 0.966 0.736 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
43. atp2b3b ENSDARG00000023445 1424 3.26 0.764 0.707 - - - 0.943 0.846 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
44. Sep-03 Sep-03 1124 3.258 - 0.805 - - - 0.920 0.763 - 0.770
45. adcyap1b ENSDARG00000027740 1539 3.252 0.778 - - - - 0.948 0.788 0.738 - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
46. mir10d-1 mir10d-1 860 3.252 0.791 0.713 - - - 0.911 0.837 - -
47. rap2ip rap2ip 681 3.252 - 0.740 - - - 0.946 0.855 - 0.711
48. ZFHX3 ENSDARG00000103057 7759 3.251 0.769 - - - - 0.876 0.861 0.745 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
49. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 3.248 0.834 0.705 - - - 0.866 0.843 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
50. ndrg4 ENSDARG00000103937 1234 3.244 - - - 0.717 - 0.932 0.794 - 0.801 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
51. msi1 ENSDARG00000010710 2634 3.239 0.815 0.707 - - - 0.842 0.875 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
52. zic2b ENSDARG00000037178, ENSDARG00000112354 993 3.239 0.718 0.797 - - - 0.875 0.849 - - zic family member 2 (odd-paired homolog, Drosophila) b [Source:ZFIN;Acc:ZDB-GENE-030219-92]
53. si:ch211-11c15.3 si:ch211-11c15.3 1279 3.239 0.709 - - - - 0.975 0.821 - 0.734
54. dpysl3 ENSDARG00000002587 4381 3.223 0.775 - - - - 0.870 0.878 - 0.700 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
55. lhx5 ENSDARG00000057936 785 3.221 0.719 - - - - 0.958 0.801 0.743 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
56. negr1 ENSDARG00000021607 1051 3.221 0.765 - - - - 0.858 0.897 - 0.701 neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
57. tox ENSDARG00000032317 9126 3.221 0.744 - - - - 0.830 0.917 - 0.730 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
58. scn2b ENSDARG00000101713 796 3.216 0.836 0.821 - - - 0.710 0.849 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
59. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 3.214 0.743 - - - - 0.882 0.872 - 0.717 zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
60. zic4 ENSDARG00000031307 1228 3.204 0.735 0.730 - - - 0.942 0.797 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
61. rgs20 ENSDARG00000038859 331 3.194 0.711 - - 0.831 - 0.857 0.795 - - regulator of G protein signaling 20 [Source:ZFIN;Acc:ZDB-GENE-040718-128]
62. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 3.182 0.726 0.724 - - - 0.928 0.804 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
63. add2 ENSDARG00000074581 1402 3.182 0.726 - - - - 0.879 0.850 0.727 - adducin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-080718-4]
64. fzd3a ENSDARG00000021664 1958 3.179 0.836 - - - - 0.776 0.865 - 0.702 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
65. clvs2 ENSDARG00000053122 1390 3.175 0.828 - - - - - 0.880 0.751 0.716 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
66. KCNAB2 KCNAB2 129 3.172 0.847 0.783 - - - 0.768 0.774 - -
67. sema6a ENSDARG00000102165 1401 3.168 - - - - - 0.860 0.793 0.754 0.761 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:ZFIN;Acc:ZDB-GENE-030131-8004]
68. tmem35 ENSDARG00000052567 5685 3.166 0.746 - - - - 0.764 0.908 - 0.748 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
69. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 3.163 - - - - - 0.852 0.845 0.734 0.732 cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
70. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 3.155 0.772 - - 0.713 - 0.815 0.855 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
71. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 3.147 0.730 - - - - 0.895 0.817 - 0.705 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
72. nbeaa ENSDARG00000070080 862 3.146 0.801 - - - - 0.775 0.861 - 0.709 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
73. jag1a ENSDARG00000030289 1275 3.128 0.786 0.739 - - - 0.786 0.817 - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
74. nes ENSDARG00000088805 2710 3.127 0.703 0.757 - - - 0.776 0.891 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
75. nkx1.2lb ENSDARG00000099427 220 3.125 0.804 0.766 - - - 0.847 0.708 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
76. stmn4l ENSDARG00000043932 654 3.124 0.707 - - - - 0.925 0.724 0.768 - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
77. syt11b ENSDARG00000056105 578 3.084 0.797 0.779 - - - - - 0.781 0.727 synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
78. syngr3a ENSDARG00000014871 405 3.07 0.771 0.726 - 0.704 - - 0.869 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
79. lhx1a ENSDARG00000014018 958 3.063 - 0.738 - - - 0.830 0.777 - 0.718 LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
80. sept5a ENSDARG00000013843 1206 3.057 0.726 - - - - 0.806 0.773 0.752 - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
81. LDLRAD4 LDLRAD4 1237 3.052 - - - 0.847 - 0.743 0.709 - 0.753
82. SV2A ENSDARG00000059945 1278 3.014 0.737 - - - - - 0.810 0.706 0.761 synaptic vesicle glycoprotein 2A [Source:ZFIN;Acc:ZDB-GENE-131001-1]
83. rufy3 ENSDARG00000029692 3031 2.992 0.752 0.768 - - - 0.700 0.772 - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
84. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 2.985 0.718 - - 0.719 - 0.790 0.758 - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
85. slc1a3a ENSDARG00000104431 9888 2.727 0.849 - - - - 0.975 0.903 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
86. pcdh1gc5 ENSDARG00000104826 10052 2.693 0.826 - - - - 0.973 0.894 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
87. stmn1b ENSDARG00000033655 9491 2.685 0.864 - - - - 0.945 0.876 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
88. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.677 0.824 - - - - 0.964 0.889 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
89. stxbp1a ENSDARG00000001994 5154 2.66 - 0.833 - - - 0.966 0.861 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
90. atp6v0cb ENSDARG00000036577 3472 2.648 0.792 - - - - 0.950 0.906 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
91. olfm1b ENSDARG00000014053 1392 2.647 0.837 - - - - 0.966 0.844 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
92. nrn1a ENSDARG00000071860 1311 2.645 0.820 - - - - 0.943 0.882 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
93. BX957337.1 BX957337.1 1685 2.632 0.831 - - - - 0.958 0.843 - -
94. rab3ab ENSDARG00000043835 1267 2.628 0.816 - - - - 0.943 0.869 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
95. kcnc3a ENSDARG00000055855 1821 2.621 0.834 - - - - 0.943 0.844 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
96. sncgb ENSDARG00000109715 1014 2.619 0.851 - - - - 0.971 0.797 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
97. nova1 ENSDARG00000020178 4129 2.617 - 0.823 - - - 0.950 0.844 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
98. gabra5 ENSDARG00000070730 156 2.617 0.816 - - - - 0.931 0.870 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
99. eno2 ENSDARG00000014287 2162 2.611 0.807 - - - - 0.916 0.888 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
100. kif1ab ENSDARG00000062024 794 2.61 - 0.765 - - - 0.944 0.901 - - kinesin family member 1Ab [Source:ZFIN;Acc:ZDB-GENE-070912-480]

There are 2207 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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