Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rtf1

Gene Name Gene ID Reads Annotation
rtf1 ENSDARG00000008947 6596 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]










Genes with expression patterns similar to rtf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rtf1 ENSDARG00000008947 6596 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
2. lfng ENSDARG00000037879 11783 3.321 0.811 - - - - - 0.997 0.764 0.749 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
3. zswim5 ENSDARG00000055900 4243 3.129 - - 0.884 - 0.820 0.704 - - 0.721 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
4. u2af1 ENSDARG00000015325 3217 3.07 0.748 - - - 0.789 0.757 - - 0.776 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
5. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 3.05 - - - - 0.824 0.743 - 0.752 0.731 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
6. SNORD72 SNORD72 4018 2.693 - - - - 0.899 0.803 0.991 - -
7. ankhd1 ENSDARG00000077860 5510 2.646 - 0.954 - 0.978 - 0.714 - - - ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
8. rbm39b ENSDARG00000041853 1421 2.612 - - 0.848 - 0.905 0.859 - - - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
9. nr2f1a ENSDARG00000052695 5037 2.605 - 0.930 0.867 - - - - - 0.808 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
10. dip2ba ENSDARG00000005350, ENSDARG00000111011, ENSDARG00000111214 1640 2.585 - - - 0.982 0.897 0.706 - - - disco-interacting protein 2 homolog Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
11. yaf2 ENSDARG00000015966 1905 2.554 - - 0.855 0.978 - - - - 0.721 YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
12. rnf10 ENSDARG00000079687 6768 2.512 - 0.838 0.860 - - 0.814 - - - ring finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-2969]
13. ncl ENSDARG00000002710 16951 2.509 - - - - - 0.721 0.997 - 0.791 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
14. kdm5c ENSDARG00000006124 4389 2.498 - - 0.830 - 0.928 0.740 - - - lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
15. ncapd2 ENSDARG00000005058 2819 2.498 - 0.951 - - - - - 0.814 0.733 non-SMC condensin I complex, subunit D2 [Source:ZFIN;Acc:ZDB-GENE-050506-59]
16. CABZ01087568.1 CABZ01087568.1 1487 2.462 - - 0.825 - 0.922 0.715 - - -
17. nup93 ENSDARG00000003487, ENSDARG00000111433 2474 2.461 - 0.948 - - 0.813 - - - 0.700 nucleoporin 93 [Source:ZFIN;Acc:ZDB-GENE-990415-46]
18. myh10 ENSDARG00000000103 7522 2.454 0.739 - - - - 0.729 0.986 - - myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
19. arih2 ENSDARG00000012848 7087 2.447 - - - 0.975 0.761 0.711 - - - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
20. eif3ba ENSDARG00000059654 22960 2.407 - - 0.876 - - 0.822 - - 0.709 eukaryotic translation initiation factor 3, subunit Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2748]
21. gpm6bb ENSDARG00000001676 2005 2.393 0.749 - 0.861 - - - - - 0.783 glycoprotein M6Bb [Source:ZFIN;Acc:ZDB-GENE-030710-10]
22. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 2.388 0.717 - - 0.947 - - - - 0.724 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
23. sipa1l2 ENSDARG00000061640 4545 2.382 - - 0.852 - - 0.745 - - 0.785 signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
24. hnrnpub ENSDARG00000004735 16496 2.341 0.787 - - - 0.724 - - - 0.830 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
25. lypla2 ENSDARG00000053656 8971 2.329 - - 0.871 - - 0.711 - - 0.747 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
26. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 2.299 - - - - 0.791 0.753 - - 0.755 immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
27. polr2d ENSDARG00000076509 3386 2.289 - - 0.842 - 0.746 - - - 0.701 polymerase (RNA) II (DNA directed) polypeptide D [Source:ZFIN;Acc:ZDB-GENE-040714-2]
28. ddx39ab ENSDARG00000015111 11619 2.284 - - 0.802 - - 0.726 - - 0.756 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
29. khsrp ENSDARG00000026489 15738 2.258 0.710 - - 0.845 - 0.703 - - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
30. creb1a ENSDARG00000053586 5068 2.229 - - - - - 0.703 - 0.726 0.800 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
31. prnprs3 ENSDARG00000003705 1854 2.221 0.713 - - - 0.732 - - 0.776 - prion protein, related sequence 3 [Source:ZFIN;Acc:ZDB-GENE-041221-3]
32. casp3a ENSDARG00000017905, ENSDARG00000113754 2819 2.198 - - - - 0.783 0.714 - - 0.701 caspase 3, apoptosis-related cysteine peptidase a [Source:ZFIN;Acc:ZDB-GENE-011210-1]
33. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 2.175 0.705 - 0.721 - 0.749 - - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
34. pdlim5b ENSDARG00000027600 4252 1.954 - 0.955 - - - - 0.999 - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
35. si:ch211-160e1.5 5586 1.945 - 0.954 - - - - 0.991 - - si:ch211-160e1.5
36. slc1a5 ENSDARG00000099186 7580 1.937 - 0.956 - 0.981 - - - - - solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
37. aamp ENSDARG00000045019 2818 1.933 - 0.966 - 0.967 - - - - - angio-associated, migratory cell protein [Source:ZFIN;Acc:ZDB-GENE-040426-2370]
38. ttll4 ENSDARG00000078935 1663 1.932 - - - - 0.933 - 0.999 - - tubulin tyrosine ligase-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-313]
39. dct ENSDARG00000006008 2466 1.93 - - - - 0.931 - 0.999 - - dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-000508-1]
40. atp6ap1b ENSDARG00000037153 3970 1.921 - 0.923 - - - - 0.998 - - ATPase H+ transporting accessory protein 1b [Source:ZFIN;Acc:ZDB-GENE-020423-2]
41. DUSP28 ENSDARG00000059695 1135 1.919 - 0.938 - 0.981 - - - - - dual specificity phosphatase 28 [Source:ZFIN;Acc:ZDB-GENE-131127-257]
42. TSG101 TSG101 1686 1.898 - - - - 0.899 - 0.999 - -
43. prelid1a ENSDARG00000098671 4745 1.894 - - - 0.959 0.935 - - - - PRELI domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1341]
44. tecrb ENSDARG00000025904 4612 1.891 - 0.932 - 0.959 - - - - - trans-2,3-enoyl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-030131-5154]
45. pacsin2 ENSDARG00000078014 1582 1.883 - 0.959 - - 0.924 - - - - protein kinase C and casein kinase substrate in neurons 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2596]
46. tpi1a ENSDARG00000025012 562 1.877 - 0.933 - - 0.944 - - - - triosephosphate isomerase 1a [Source:ZFIN;Acc:ZDB-GENE-020416-3]
47. mis18a ENSDARG00000035333 555 1.875 - 0.929 - - 0.946 - - - - MIS18 kinetochore protein A [Source:ZFIN;Acc:ZDB-GENE-091204-314]
48. si:ch211-51e12.7 ENSDARG00000045914 9598 1.849 - - - - - 0.851 0.998 - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
49. copg2 ENSDARG00000034823 4162 1.837 - 0.967 - - 0.870 - - - - coatomer protein complex, subunit gamma 2 [Source:ZFIN;Acc:ZDB-GENE-000208-8]
50. phax ENSDARG00000044298 2302 1.829 - - - 0.982 0.847 - - - - phosphorylated adaptor for RNA export [Source:ZFIN;Acc:ZDB-GENE-040822-42]
51. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.822 - - 0.823 - - - 0.999 - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
52. ttc3 ENSDARG00000086075 2157 1.818 - - 0.859 - 0.959 - - - - tetratricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-090313-3]
53. tfap4 ENSDARG00000103923 2203 1.81 - - 0.847 - 0.963 - - - - transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
54. tp53 ENSDARG00000035559, ENSDARG00000115148 4362 1.809 - 0.954 - - 0.855 - - - - tumor protein p53 [Source:ZFIN;Acc:ZDB-GENE-990415-270]
55. gna12a ENSDARG00000025826 1769 1.809 - 0.954 - - 0.855 - - - - guanine nucleotide binding protein (G protein) alpha 12a [Source:ZFIN;Acc:ZDB-GENE-050221-1]
56. exoc6 ENSDARG00000020521 1533 1.808 - - 0.828 0.980 - - - - - exocyst complex component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-2511]
57. hopx ENSDARG00000089368 2342 1.806 - - 0.827 0.979 - - - - - HOP homeobox [Source:ZFIN;Acc:ZDB-GENE-031016-2]
58. sp1 ENSDARG00000088347 1697 1.797 - 0.947 - - 0.850 - - - - sp1 transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-2829]
59. hnrnpk ENSDARG00000018914 8841 1.788 - 0.902 0.886 - - - - - - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
60. meis1 meis1 6937 1.785 0.812 - - 0.973 - - - - -
61. tmco1 ENSDARG00000069099, ENSDARG00000113013 4698 1.785 - - - - 0.786 - 0.999 - - transmembrane and coiled-coil domains 1 [Source:ZFIN;Acc:ZDB-GENE-050417-344]
62. u2surp ENSDARG00000061490 2814 1.785 - 0.945 - - - 0.840 - - - U2 snRNP-associated SURP domain containing [Source:ZFIN;Acc:ZDB-GENE-070912-400]
63. pcca ENSDARG00000028982, ENSDARG00000110281 3212 1.784 - - - 0.980 0.804 - - - - propionyl-CoA carboxylase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-040718-246]
64. pinx1 ENSDARG00000023532 4452 1.782 - - - - 0.782 - 1.000 - - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
65. cdk11b ENSDARG00000102546 1579 1.781 - 0.941 0.840 - - - - - - cyclin-dependent kinase 11B [Source:ZFIN;Acc:ZDB-GENE-041212-74]
66. ddx27 ENSDARG00000091831 1471 1.773 - - 0.843 - 0.930 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
67. xpo1b ENSDARG00000063229 2529 1.771 - - 0.889 - 0.882 - - - - exportin 1 (CRM1 homolog, yeast) b [Source:ZFIN;Acc:ZDB-GENE-070530-6]
68. eya3 ENSDARG00000036100 1965 1.768 - 0.949 0.819 - - - - - - EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
69. strn3 ENSDARG00000001729 4608 1.763 - 0.957 - - 0.806 - - - - striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
70. GTSE1 ENSDARG00000013719 1115 1.762 - - 0.828 - 0.934 - - - - G-2 and S-phase expressed 1 [Source:ZFIN;Acc:ZDB-GENE-050522-493]
71. mgaa ENSDARG00000078784 1344 1.761 - - 0.848 - 0.913 - - - - MGA, MAX dimerization protein a [Source:ZFIN;Acc:ZDB-GENE-030603-1]
72. pfdn4 ENSDARG00000061228 8266 1.757 - 0.924 0.833 - - - - - - prefoldin subunit 4 [Source:ZFIN;Acc:ZDB-GENE-100922-122]
73. esrp1 ENSDARG00000011245 2097 1.75 - 0.918 - - - - - 0.832 - epithelial splicing regulatory protein 1 [Source:ZFIN;Acc:ZDB-GENE-070112-1732]
74. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.75 - - - - 0.930 - - 0.820 - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
75. TNRC6A ENSDARG00000079688 14433 1.748 - - - 0.955 - 0.793 - - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
76. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.747 - - - - 0.941 0.806 - - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
77. snrpc ENSDARG00000009871 9567 1.737 - 0.952 - - - - - - 0.785 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
78. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 1.736 - 0.954 - - - - - - 0.782 bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
79. atf4b2 atf4b2 4734 1.734 - 0.933 - - 0.801 - - - -
80. TUBGCP6 1991 1.734 - - 0.817 - 0.917 - - - - tubulin, gamma complex associated protein 6
81. zgc:92107 ENSDARG00000044874, ENSDARG00000115497 5938 1.731 0.794 0.937 - - - - - - - zgc:92107 [Source:ZFIN;Acc:ZDB-GENE-041114-4]
82. necap2 ENSDARG00000046002 4372 1.726 - - - - 0.859 - - 0.867 - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
83. ptbp2b ENSDARG00000015901 2458 1.726 - - - 0.987 - - - - 0.739 polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
84. si:dkey-9i23.11 si:dkey-9i23.11 3818 1.722 - 0.950 - - 0.772 - - - -
85. eif4ebp2 ENSDARG00000031819 13168 1.722 - 0.956 - - - 0.766 - - - eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
86. CORO1C CORO1C 5554 1.721 0.836 - - 0.885 - - - - -
87. ndufb4 ENSDARG00000019332, ENSDARG00000110786, ENSDARG00000113951 11340 1.72 - - - 0.932 - 0.788 - - - NADH:ubiquinone oxidoreductase subunit B4 [Source:ZFIN;Acc:ZDB-GENE-040426-1973]
88. ddx42 ENSDARG00000037928 1659 1.719 - - - - 0.892 - - 0.827 - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
89. scaf4a ENSDARG00000077093 2408 1.717 - - - - 0.880 - - 0.837 - SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
90. safb ENSDARG00000020467 5608 1.716 - - 0.887 - - - - - 0.829 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
91. srp72 ENSDARG00000014139 5221 1.713 - 0.935 - - - 0.778 - - - signal recognition particle 72 [Source:ZFIN;Acc:ZDB-GENE-030131-5546]
92. atpif1a 6030 1.704 - 0.934 - - - 0.770 - - - ATPase inhibitory factor 1a
93. cdkn1c cdkn1c 17427 1.702 0.728 - - 0.974 - - - - -
94. rbm25 rbm25 3629 1.7 - - 0.916 - - - - - 0.784
95. PSIP1 PSIP1 5252 1.698 0.731 0.967 - - - - - - -
96. drap1 ENSDARG00000041203 6749 1.698 0.714 - - 0.984 - - - - - DR1-associated protein 1 (negative cofactor 2 alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-400]
97. ptbp3 ENSDARG00000043757 6760 1.697 - 0.952 - - - 0.745 - - - polypyrimidine tract binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-091116-1]
98. max ENSDARG00000024844 6035 1.694 - - - - 0.879 - - - 0.815 myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
99. psmd14 ENSDARG00000063100 15711 1.691 - 0.955 - - - 0.736 - - - proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
100. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 1.69 - 0.942 - - - 0.748 - - - PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]

There are 1911 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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