Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rtca

Gene Name Gene ID Reads Annotation
rtca ENSDARG00000002215 3558 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]










Genes with expression patterns similar to rtca

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rtca ENSDARG00000002215 3558 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
2. nfya ENSDARG00000042004, ENSDARG00000114231 6606 3.76 - 0.734 0.709 0.851 - 0.747 - 0.719 - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
3. nkain1 ENSDARG00000006859 1961 3.725 - - - 0.759 - 0.711 0.701 0.763 0.791 sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
4. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 3.168 - - - - 0.706 - 0.814 0.736 0.912 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
5. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 3.125 - - 0.802 - - 0.773 0.826 0.724 - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
6. hnrpl 6412 3.123 - - 0.758 - - 0.802 0.774 - 0.789 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
7. AGO1 ENSDARG00000092644 4521 3.122 - 0.730 - - - 0.766 0.871 - 0.755 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
8. dpysl5a ENSDARG00000011141 1827 3.121 - - 0.712 - - - 0.822 0.707 0.880 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
9. fam60al 2846 3.112 - - - - 0.762 0.795 0.812 - 0.743 family with sequence similarity 60, member A, like
10. dpysl3 ENSDARG00000002587 4381 3.1 - 0.728 - - - 0.732 0.850 - 0.790 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
11. puf60a ENSDARG00000032175 5618 3.096 - 0.782 0.740 - - - 0.710 - 0.864 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
12. CR936437.1 CR936437.1 6465 3.079 - - 0.742 0.734 - - 0.780 - 0.823
13. mllt11 ENSDARG00000071026 2518 3.05 - - - - - 0.742 0.806 0.721 0.781 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
14. sumo3a ENSDARG00000028119 13447 3.021 - - - 0.745 - 0.701 0.743 - 0.832 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
15. tmsb ENSDARG00000054911 6411 3.011 0.704 0.732 - - - 0.765 0.810 - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
16. rap2ip rap2ip 681 3.002 - - - - - 0.718 0.824 0.712 0.748
17. si:ch211-10a23.2 ENSDARG00000060656 471 2.956 - - - - - 0.705 0.758 0.748 0.745 si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
18. gipc1 ENSDARG00000104483 2913 2.867 - 0.706 0.726 - - 0.708 0.727 - - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
19. tmem35 ENSDARG00000052567 5685 2.573 - - - - - 0.836 0.858 - 0.879 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
20. msi1 ENSDARG00000010710 2634 2.503 - - - 0.882 - 0.801 0.820 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
21. SNRPG ENSDARG00000099667 18697 2.491 - - - 0.841 - - 0.797 - 0.853 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
22. smarca5 ENSDARG00000052348 15433 2.45 - - - - - 0.778 0.825 - 0.847 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
23. nrarpb ENSDARG00000018958 6225 2.441 - - - - - 0.741 0.859 - 0.841 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
24. nhlh2 ENSDARG00000025495 1860 2.432 - - - - - 0.741 0.822 - 0.869 nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
25. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.42 - - - - - 0.782 0.816 - 0.822 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
26. FP016176.1 FP016176.1 7030 2.417 - - - - - 0.824 0.845 - 0.748
27. hmgb3a ENSDARG00000056725 15668 2.41 - - - - - 0.837 0.796 - 0.777 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
28. hmgb1b ENSDARG00000030479 10398 2.407 - - 0.741 - - 0.760 0.906 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
29. celf3a ENSDARG00000034668 2432 2.395 - - - - - 0.764 - 0.772 0.859 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
30. tmpob ENSDARG00000022978 8121 2.393 - - 0.717 - - - 0.824 - 0.852 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
31. tuba1c ENSDARG00000055216 8384 2.393 - - - - - 0.713 0.849 - 0.831 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
32. dnaja2l ENSDARG00000010745 2367 2.39 - - 0.757 - - 0.768 - - 0.865 DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
33. pou3f3a ENSDARG00000042032 2835 2.378 - - - - - 0.782 0.812 - 0.784 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
34. nadl1.1 1200 2.377 - - - - - 0.794 0.833 - 0.750 neural adhesion molecule L1.1, transcript variant X1
35. her4.3 ENSDARG00000070770 613 2.363 - - - - - 0.778 0.824 - 0.761 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
36. CABZ01070258.1 ENSDARG00000105687 3643 2.36 - 0.792 0.722 - - - 0.846 - -
37. CABZ01111990.1 CABZ01111990.1 4374 2.358 - 0.759 - - - 0.757 0.842 - -
38. atp6v0cb ENSDARG00000036577 3472 2.356 - - - - - 0.771 0.855 - 0.730 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
39. neurog1 ENSDARG00000056130 3924 2.356 - - 0.709 - - 0.805 0.842 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
40. dnajc5aa ENSDARG00000042948 2885 2.351 - - - - - 0.731 0.834 - 0.786 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
41. nova2 ENSDARG00000017673 7685 2.35 - - - - - 0.807 0.825 - 0.718 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
42. C8H1orf106 C8H1orf106 2690 2.347 - - - - - 0.764 0.812 - 0.771
43. wfikkn2a ENSDARG00000013460 859 2.346 - - - - - 0.793 0.723 - 0.830 info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-120914-1]
44. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 2.342 - - - - 0.717 - 0.842 - 0.783 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
45. her13 ENSDARG00000007097 2000 2.335 - - - - - - 0.774 0.817 0.744 hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
46. snrpd3l ENSDARG00000076283 7655 2.334 - - - 0.714 - - 0.782 - 0.838 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
47. ddx39ab ENSDARG00000015111 11619 2.333 - - - - - 0.728 0.799 - 0.806 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
48. C24H17orf96 C24H17orf96 1538 2.325 - 0.712 - - - - 0.784 - 0.829
49. tgif1 ENSDARG00000059337 4020 2.323 - - 0.701 - - - 0.821 - 0.801 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
50. pcdh1gc5 ENSDARG00000104826 10052 2.323 - - - - - 0.702 0.845 0.776 - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
51. srsf4 ENSDARG00000105293 9657 2.321 - - - 0.788 - 0.805 0.728 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
52. ndrg4 ENSDARG00000103937 1234 2.316 - - - - - 0.711 0.772 - 0.833 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
53. negr1 ENSDARG00000021607 1051 2.314 - - - - - 0.802 0.737 - 0.775 neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
54. khsrp ENSDARG00000026489 15738 2.311 - - - - - 0.705 0.838 - 0.768 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
55. arnt2 ENSDARG00000103697 5731 2.311 - - - - - 0.758 0.782 - 0.771 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
56. pcdh19 ENSDARG00000034344 2378 2.308 - - - - - 0.726 0.725 - 0.857 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
57. AP3B2 1874 2.308 - - - - - 0.710 0.830 - 0.768 adaptor related protein complex 3 beta 2 subunit, transcript variant X2
58. pacsin1b ENSDARG00000042128 1051 2.305 - - - - - 0.765 0.812 - 0.728 protein kinase C and casein kinase substrate in neurons 1b [Source:ZFIN;Acc:ZDB-GENE-050913-35]
59. uba1 ENSDARG00000037559 11579 2.295 - - - - 0.727 0.757 0.811 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
60. SPOCK1 ENSDARG00000074644 794 2.295 - - - - - 0.719 0.813 - 0.763 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
61. fzd3a ENSDARG00000021664 1958 2.294 - - - 0.704 - - 0.823 - 0.767 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
62. dync1i1 ENSDARG00000060948 554 2.293 - - - - - 0.746 0.778 - 0.769 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
63. PRIMA1 PRIMA1 459 2.29 - 0.760 - - - 0.747 0.783 - -
64. sae1 ENSDARG00000010487 2028 2.289 - 0.768 - 0.788 - - 0.733 - - SUMO1 activating enzyme subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040625-21]
65. gdf11 ENSDARG00000044924 534 2.287 - - - - - 0.704 0.831 - 0.752 growth differentiation factor 11 [Source:ZFIN;Acc:ZDB-GENE-040427-2]
66. rtn1b ENSDARG00000021143 1682 2.284 - - - - - 0.719 0.786 - 0.779 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
67. kif5bb 1645 2.282 - 0.732 - - - 0.748 - - 0.802 kinesin family member 5B, b
68. rbb4 rbb4 15541 2.28 - - 0.748 - - - 0.730 - 0.802
69. MKI67 ENSDARG00000091150 11038 2.278 - - - 0.702 - 0.808 0.768 - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
70. ylpm1 ENSDARG00000043680 7676 2.278 - - 0.761 - - 0.776 0.741 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
71. APBB3 ENSDARG00000053771 654 2.274 - - - - - 0.702 0.800 - 0.772 amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
72. hoxa9a ENSDARG00000105013 1509 2.272 - 0.740 - - - 0.761 0.771 - - homeobox A9a [Source:ZFIN;Acc:ZDB-GENE-000823-1]
73. top2b ENSDARG00000034195 3715 2.267 - 0.718 0.738 - - - 0.811 - - DNA topoisomerase II beta [Source:ZFIN;Acc:ZDB-GENE-041008-136]
74. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 2.266 - - - - - 0.710 0.770 - 0.786 G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
75. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.262 - - - - - 0.731 0.767 - 0.764 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
76. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.262 - - - - - 0.713 0.739 - 0.810 cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
77. ddx19 ENSDARG00000005699 4602 2.261 - - 0.749 - - 0.718 - - 0.794 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
78. hdac1 ENSDARG00000015427 19804 2.255 - - 0.745 - - 0.732 - - 0.778 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
79. kif22 ENSDARG00000102624 3694 2.255 - - 0.705 - - - 0.739 - 0.811 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
80. FNBP4 ENSDARG00000051800 2839 2.246 - - 0.740 - - - - 0.727 0.779 formin binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-130530-633]
81. pak2b ENSDARG00000018476 4331 2.244 - - - - - 0.723 0.789 - 0.732 p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
82. foxk2 ENSDARG00000030583 2982 2.227 - - - - - 0.729 0.738 - 0.760 forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
83. ZNF646 ENSDARG00000061424 1549 2.225 - - - 0.732 - - 0.716 - 0.777 zinc finger protein 646 [Source:ZFIN;Acc:ZDB-GENE-160627-3]
84. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 2.225 - - - - - 0.751 0.771 - 0.703 chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
85. CBFA2T3 ENSDARG00000079012 6799 2.221 - 0.703 - - - 0.703 0.815 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
86. fmnl2b ENSDARG00000075041 1744 2.21 - - - - - 0.720 0.711 - 0.779 formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
87. r3hcc1l ENSDARG00000089243 1254 2.21 - 0.744 - 0.735 - - 0.731 - - R3H domain and coiled-coil containing 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-4156]
88. nexmifb ENSDARG00000029296 416 2.205 - - - 0.737 - - 0.749 - 0.719 neurite extension and migration factor b [Source:ZFIN;Acc:ZDB-GENE-140106-18]
89. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 2.189 - - 0.727 0.758 - - - - 0.704 nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
90. pop7 ENSDARG00000036394 1684 2.16 - 0.708 - - - - - 0.704 0.748 POP7 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-041010-88]
91. raver1 ENSDARG00000052617 1189 2.14 - 0.703 0.709 - - - - - 0.728 ribonucleoprotein, PTB-binding 1 [Source:ZFIN;Acc:ZDB-GENE-050522-99]
92. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.766 - - - - - - 0.874 - 0.892 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
93. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.733 - - - - - - 0.848 - 0.885 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
94. hnrnpub ENSDARG00000004735 16496 1.727 - - - - - - 0.838 - 0.889 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
95. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.725 - - - - - - 0.832 - 0.893 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
96. golga7ba ENSDARG00000036295 1460 1.706 - - - - - - 0.844 - 0.862 golgin A7 family, member Ba [Source:ZFIN;Acc:ZDB-GENE-050417-14]
97. hmgb2b ENSDARG00000053990 11519 1.698 - - - - - - 0.835 - 0.863 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
98. kif11 ENSDARG00000010948 4973 1.695 - - - - - 0.861 - - 0.834 kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
99. coe2 coe2 1633 1.688 - 0.865 - - - - - - 0.823
100. skib ENSDARG00000008034 6518 1.686 - - - - - 0.837 0.849 - - v-ski avian sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-990715-10]

There are 1976 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA