Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rrp9

Gene Name Gene ID Reads Annotation
rrp9 ENSDARG00000041991, ENSDARG00000112140 1150 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060427-1]










Genes with expression patterns similar to rrp9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rrp9 ENSDARG00000041991, ENSDARG00000112140 1150 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060427-1]
2. pcid2 ENSDARG00000013802 1596 2.422 - - - 0.726 - 0.740 0.956 - - PCI domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041114-79]
3. eftud2 ENSDARG00000012261 3081 1.795 - 0.820 - - - - 0.975 - - elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
4. dhodh ENSDARG00000051889 401 1.747 - - - - - 0.777 0.970 - - dihydroorotate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-3157]
5. agk ENSDARG00000009837, ENSDARG00000113514 811 1.738 - 0.766 - - - - 0.972 - - acylglycerol kinase [Source:ZFIN;Acc:ZDB-GENE-030131-6202]
6. pes ENSDARG00000018902 3286 1.711 - 0.747 - - - - 0.964 - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
7. mob2b ENSDARG00000012005 395 1.701 - 0.732 - - - - 0.969 - - MOB kinase activator 2b [Source:ZFIN;Acc:ZDB-GENE-060616-319]
8. b9d1 ENSDARG00000011727 580 1.701 - - - - - 0.953 - 0.748 - B9 protein domain 1 [Source:ZFIN;Acc:ZDB-GENE-050522-467]
9. mrpl27 ENSDARG00000032985 2158 1.699 - 0.772 - - - - 0.927 - - mitochondrial ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-050522-129]
10. ccdc102a ENSDARG00000003872 791 1.699 - - - - - 0.725 0.974 - - coiled-coil domain containing 102A [Source:ZFIN;Acc:ZDB-GENE-030131-4044]
11. wbscr22 wbscr22 644 1.697 - 0.757 - - - - 0.940 - -
12. mrpl12 ENSDARG00000038768 5539 1.689 - - - - - 0.754 0.935 - - mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]
13. dnmt1 ENSDARG00000030756 2741 1.688 - 0.712 - - - - 0.976 - - DNA (cytosine-5-)-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-990714-15]
14. cdkn2aipnl ENSDARG00000053395 5107 1.678 - 0.750 - - - - 0.928 - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
15. fbp1a ENSDARG00000021366 1778 1.661 - - - 0.716 - - 0.945 - - fructose-1,6-bisphosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7171]
16. mfn1b ENSDARG00000079219 1699 1.66 - 0.767 - - - - 0.893 - - mitofusin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1553]
17. CU929431.1 CU929431.1 2234 1.653 - 0.702 - - - - 0.951 - -
18. si:dkey-258f14.2 ENSDARG00000094874 297 1.578 - 0.806 - - - 0.772 - - - si:dkey-258f14.2 [Source:ZFIN;Acc:ZDB-GENE-081104-395]
19. fam213aa 1986 1.563 - 0.710 - - - - 0.853 - - family with sequence similarity 213, member Aa
20. kcnn3 ENSDARG00000019753 461 1.542 - 0.832 - - - 0.710 - - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 [Source:ZFIN;Acc:ZDB-GENE-100921-56]
21. zgc:110655 zgc:110655 4237 1.522 - 0.727 - - - - 0.795 - -
22. mrps18b ENSDARG00000007065 2121 1.52 - 0.726 - - - 0.794 - - - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
23. ssbp1 ENSDARG00000039350 809 1.498 - 0.732 - - - 0.766 - - - single-stranded DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-340]
24. smad1 ENSDARG00000027199, ENSDARG00000112617, ENSDARG00000115674 2791 1.491 - 0.700 - 0.791 - - - - - SMAD family member 1 [Source:ZFIN;Acc:ZDB-GENE-991119-8]
25. hspd1 ENSDARG00000056160 13690 1.49 - - - - - 0.744 0.746 - - heat shock 60 protein 1 [Source:ZFIN;Acc:ZDB-GENE-021206-1]
26. ncl ENSDARG00000002710 16951 1.441 - 0.734 - - - - - - 0.707 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
27. snx7 ENSDARG00000105185 2977 0.988 - - - - - - 0.988 - - sorting nexin 7 [Source:ZFIN;Acc:ZDB-GENE-040704-77]
28. nhp2l1a nhp2l1a 993 0.986 - - - - - - 0.986 - -
29. creb3l1 ENSDARG00000015793 1988 0.984 - - - - - - 0.984 - - cAMP responsive element binding protein 3-like 1 [Source:ZFIN;Acc:ZDB-GENE-030219-181]
30. ik ENSDARG00000004161 3132 0.983 - - - - - - 0.983 - - IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
31. srrm2 ENSDARG00000037965 1967 0.983 - - - - - - 0.983 - - serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
32. abl1 ENSDARG00000035187 3553 0.983 - - - - - - 0.983 - - c-abl oncogene 1, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-100812-9]
33. fbxl2 ENSDARG00000012135 577 0.983 - - - - - - 0.983 - - F-box and leucine-rich repeat protein 2 [Source:ZFIN;Acc:ZDB-GENE-030925-12]
34. dnttip2 ENSDARG00000057648 2381 0.983 - - - - - - 0.983 - - deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
35. zgc:66014 817 0.982 - - - - - - 0.982 - - zgc:66014, transcript variant X6
36. dnajc9 ENSDARG00000031293, ENSDARG00000111989 4082 0.982 - - - - - - 0.982 - - DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:ZFIN;Acc:ZDB-GENE-040718-130]
37. rras2 ENSDARG00000036252, ENSDARG00000111642 1714 0.982 - - - - - - 0.982 - - RAS related 2 [Source:ZFIN;Acc:ZDB-GENE-050417-352]
38. cux1b ENSDARG00000043134 641 0.981 - - - - - - 0.981 - - cut-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040801-260]
39. mmab ENSDARG00000068344 526 0.981 - - - - - - 0.981 - - methylmalonic aciduria (cobalamin deficiency) cblB type [Source:ZFIN;Acc:ZDB-GENE-060526-232]
40. zc3h18 ENSDARG00000062506 1676 0.98 - - - - - - 0.980 - - zinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
41. zgc:162612 ENSDARG00000079699 244 0.98 - - - - - - 0.980 - - zgc:162612 [Source:ZFIN;Acc:ZDB-GENE-070410-88]
42. dlx4b ENSDARG00000071560 446 0.979 - - - - - - 0.979 - - distal-less homeobox 4b [Source:ZFIN;Acc:ZDB-GENE-990415-50]
43. rac3b ENSDARG00000020795 1523 0.979 - - - - - - 0.979 - - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
44. CABZ01078889.1 CABZ01078889.1 911 0.979 - - - - - - 0.979 - -
45. nrg2a ENSDARG00000077818 854 0.979 - - - - - - 0.979 - - neuregulin 2a [Source:ZFIN;Acc:ZDB-GENE-070615-10]
46. sult3st1 ENSDARG00000009885 218 0.979 - - - - - - 0.979 - - sulfotransferase family 3, cytosolic sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-061207-52]
47. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 0.978 - - - - - - 0.978 - - ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
48. armc1l ENSDARG00000020887 1219 0.978 - - - - - - 0.978 - - armadillo repeat containing 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-9819]
49. unk ENSDARG00000000935 353 0.978 - - - - - - 0.978 - - unkempt family zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-707]
50. si:ch211-149l1.2 ENSDARG00000079501 440 0.978 - - - - - - 0.978 - - si:ch211-149l1.2 [Source:ZFIN;Acc:ZDB-GENE-090313-40]
51. si:ch211-241o7.5 si:ch211-241o7.5 1387 0.978 - - - - - - 0.978 - -
52. ICT1 356 0.977 - - - - - - 0.977 - - immature colon carcinoma transcript 1
53. fgfr3 ENSDARG00000004782, ENSDARG00000114756 1791 0.977 - - - - - - 0.977 - - fibroblast growth factor receptor 3 [Source:ZFIN;Acc:ZDB-GENE-000816-1]
54. FAR2 FAR2 1459 0.977 - - - - - - 0.977 - -
55. VPS37C ENSDARG00000031836 906 0.977 - - - - - - 0.977 - - vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061110-126]
56. lrpap1 ENSDARG00000033604, ENSDARG00000116453 1389 0.977 - - - - - - 0.977 - - low density lipoprotein receptor-related protein associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5871]
57. smc5 ENSDARG00000044282 779 0.977 - - - - - - 0.977 - - structural maintenance of chromosomes 5 [Source:ZFIN;Acc:ZDB-GENE-061013-288]
58. si:ch211-198d23.1 ENSDARG00000092574 104 0.976 - - - - - - 0.976 - - si:ch211-198d23.1 [Source:ZFIN;Acc:ZDB-GENE-081104-163]
59. suds3 ENSDARG00000073737, ENSDARG00000116918 2416 0.976 - - - - - - 0.976 - - SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]
60. NTAN1 ENSDARG00000105182 844 0.976 - - - - - - 0.976 - - N-terminal asparagine amidase [Source:ZFIN;Acc:ZDB-GENE-040426-1896]
61. zgc:162816 ENSDARG00000070416 974 0.976 - - - - - - 0.976 - - zgc:162816 [Source:ZFIN;Acc:ZDB-GENE-070410-94]
62. usp43a ENSDARG00000103494, ENSDARG00000111546, ENSDARG00000112146 211 0.975 - - - - - - 0.975 - - ubiquitin specific peptidase 43a [Source:ZFIN;Acc:ZDB-GENE-100211-1]
63. mpdu1b ENSDARG00000040265 1968 0.975 - - - - - - 0.975 - - mannose-P-dolichol utilization defect 1b [Source:ZFIN;Acc:ZDB-GENE-040625-135]
64. srm ENSDARG00000055760 6572 0.975 - - - - - - 0.975 - - spermidine synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1183]
65. SLITRK6 ENSDARG00000098769 217 0.975 - - - - - - 0.975 - - SLIT and NTRK-like family, member 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2816]
66. prkaa1 ENSDARG00000060596 1448 0.975 - - - - - - 0.975 - - protein kinase, AMP-activated, alpha 1 catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030325-1]
67. cpsf2 ENSDARG00000028971 841 0.975 - - - - - - 0.975 - - cleavage and polyadenylation specific factor 2 [Source:ZFIN;Acc:ZDB-GENE-040718-79]
68. PDZD8 ENSDARG00000088699 844 0.975 - - - - - - 0.975 - - PDZ domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-110310-2]
69. smurf1 ENSDARG00000016086 878 0.975 - - - - - - 0.975 - - SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]
70. trappc13 ENSDARG00000033768 1311 0.975 - - - - - - 0.975 - - trafficking protein particle complex 13 [Source:ZFIN;Acc:ZDB-GENE-030131-9775]
71. PSD PSD 367 0.975 - - - - - - 0.975 - -
72. pan3 ENSDARG00000031637, ENSDARG00000111004 613 0.975 - - - - - - 0.975 - - poly(A) specific ribonuclease subunit PAN3 [Source:ZFIN;Acc:ZDB-GENE-070928-13]
73. lnx2b ENSDARG00000071478 654 0.975 - - - - - - 0.975 - - ligand of numb-protein X 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2500]
74. actr10 ENSDARG00000038432 1598 0.975 - - - - - - 0.975 - - ARP10 actin related protein 10 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-768]
75. ZNF337_10 ZNF337_10 183 0.975 - - - - - - 0.975 - -
76. ZFYVE1 ENSDARG00000078652 631 0.975 - - - - - - 0.975 - - zinc finger, FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-131205-1]
77. slc45a2 ENSDARG00000002593, ENSDARG00000111365 776 0.975 - - - - - - 0.975 - - solute carrier family 45, member 2 [Source:ZFIN;Acc:ZDB-GENE-050208-97]
78. si:ch73-108h4.3 si:ch73-108h4.3 193 0.974 - - - - - - 0.974 - -
79. asb6 ENSDARG00000007125 389 0.974 - - - - - - 0.974 - - ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
80. bin2b ENSDARG00000010255 2649 0.974 - - - - - - 0.974 - - bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
81. igbp1 ENSDARG00000002184, ENSDARG00000117141 879 0.974 - - - - - - 0.974 - - immunoglobulin (CD79A) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2928]
82. ncapg2 ENSDARG00000060023 993 0.974 - - - - - - 0.974 - - non-SMC condensin II complex, subunit G2 [Source:ZFIN;Acc:ZDB-GENE-070410-100]
83. PRR5 PRR5 630 0.974 - - - - - - 0.974 - -
84. dennd5b ENSDARG00000003789 1152 0.974 - - - - - - 0.974 - - DENN/MADD domain containing 5B [Source:ZFIN;Acc:ZDB-GENE-030131-2248]
85. gnsb ENSDARG00000098296 1075 0.973 - - - - - - 0.973 - - glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b [Source:ZFIN;Acc:ZDB-GENE-030131-5846]
86. AL844567.1 AL844567.1 1605 0.973 - - - - - - 0.973 - -
87. dnajb9a ENSDARG00000052072 578 0.973 - - - - - - 0.973 - - DnaJ (Hsp40) homolog, subfamily B, member 9a [Source:ZFIN;Acc:ZDB-GENE-050626-115]
88. FBXO31 ENSDARG00000062195 753 0.973 - - - - - - 0.973 - - F-box protein 31 [Source:ZFIN;Acc:ZDB-GENE-070628-4]
89. slc43a1a ENSDARG00000037393, ENSDARG00000113118 5797 0.973 - - - - - - 0.973 - - solute carrier family 43 (amino acid system L transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6327]
90. zgc:63691 zgc:63691 180 0.973 - - - - - - 0.973 - -
91. SEMA4B SEMA4B 1259 0.973 - - - - - - 0.973 - -
92. ap1s1 ENSDARG00000056803 3854 0.973 - - - - - - 0.973 - - adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
93. socs3a ENSDARG00000025428 349 0.973 - - - - - - 0.973 - - suppressor of cytokine signaling 3a [Source:ZFIN;Acc:ZDB-GENE-030131-7349]
94. socs5a ENSDARG00000100717 6927 0.973 - - - - - - 0.973 - - suppressor of cytokine signaling 5a [Source:ZFIN;Acc:ZDB-GENE-061013-408]
95. illr4 ENSDARG00000008075 164 0.973 - - - - - - 0.973 - - immune-related, lectin-like receptor 4 [Source:ZFIN;Acc:ZDB-GENE-050311-5]
96. ubap2l ENSDARG00000063219 1147 0.973 - - - - - - 0.973 - - ubiquitin associated protein 2-like [Source:ZFIN;Acc:ZDB-GENE-060503-244]
97. adipor1b ENSDARG00000042717 1348 0.973 - - - - - - 0.973 - - adiponectin receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2896]
98. nfya ENSDARG00000042004, ENSDARG00000114231 6606 0.973 - - - - - - 0.973 - - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
99. CAPN5 CAPN5 357 0.973 - - - - - - 0.973 - -
100. itpkcb ENSDARG00000067741 2370 0.973 - - - - - - 0.973 - - inositol-trisphosphate 3-kinase Cb [Source:ZFIN;Acc:ZDB-GENE-080225-27]

There are 1057 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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