Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rrn3

Gene Name Gene ID Reads Annotation
rrn3 ENSDARG00000102997 721 RRN3 homolog, RNA polymerase I transcription factor [Source:ZFIN;Acc:ZDB-GENE-080225-1]










Genes with expression patterns similar to rrn3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rrn3 ENSDARG00000102997 721 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RRN3 homolog, RNA polymerase I transcription factor [Source:ZFIN;Acc:ZDB-GENE-080225-1]
2. fbln5 ENSDARG00000039273 105 1.689 - 0.881 - - - - - 0.808 - fibulin 5 [Source:ZFIN;Acc:ZDB-GENE-041010-54]
3. ARHGEF15 ENSDARG00000100293 553 1.672 - 0.860 - - - - - 0.812 - Rho guanine nucleotide exchange factor (GEF) 15 [Source:ZFIN;Acc:ZDB-GENE-060526-292]
4. bloc1s1 ENSDARG00000014171 597 1.529 - 0.799 - - - - - 0.730 - biogenesis of lysosomal organelles complex-1, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050208-569]
5. MAD2L1BP ENSDARG00000104943 351 1.513 - - - - - - 0.750 0.763 - MAD2L1 binding protein [Source:ZFIN;Acc:ZDB-GENE-161230-19]
6. znf292b ENSDARG00000043973 3791 1.493 - 0.740 - - - - 0.753 - - zinc finger protein 292b [Source:ZFIN;Acc:ZDB-GENE-030131-9559]
7. cdc27 ENSDARG00000056258 1836 1.458 - 0.755 - - - - - 0.703 - cell division cycle 27 [Source:ZFIN;Acc:ZDB-GENE-990706-2]
8. cdc42ep3 ENSDARG00000052783 1485 0.964 - 0.964 - - - - - - - CDC42 effector protein (Rho GTPase binding) 3 [Source:ZFIN;Acc:ZDB-GENE-040912-89]
9. cxxc1 cxxc1 914 0.954 - 0.954 - - - - - - -
10. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 0.952 - 0.952 - - - - - - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
11. endog ENSDARG00000058865 679 0.945 - 0.945 - - - - - - - endonuclease G [Source:ZFIN;Acc:ZDB-GENE-050522-402]
12. ppp1r14bb ENSDARG00000030161 2349 0.935 - 0.935 - - - - - - - protein phosphatase 1, regulatory (inhibitor) subunit 14Bb [Source:ZFIN;Acc:ZDB-GENE-030616-595]
13. slc25a5 ENSDARG00000092553 626 0.934 - 0.934 - - - - - - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 [Source:ZFIN;Acc:ZDB-GENE-020419-9]
14. si:ch211-218g4.2 ENSDARG00000078145 778 0.934 - 0.934 - - - - - - - si:ch211-218g4.2 [Source:ZFIN;Acc:ZDB-GENE-090312-60]
15. loxl2b ENSDARG00000044074 1919 0.933 - 0.933 - - - - - - - lysyl oxidase-like 2b [Source:ZFIN;Acc:ZDB-GENE-050208-29]
16. hspb9 ENSDARG00000078674 2755 0.931 - 0.931 - - - - - - - heat shock protein, alpha-crystallin-related, 9 [Source:ZFIN;Acc:ZDB-GENE-080214-6]
17. rab22a ENSDARG00000015807, ENSDARG00000114826 1627 0.931 - 0.931 - - - - - - - RAB22A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-161]
18. gspt1 ENSDARG00000031048, ENSDARG00000109388 2735 0.93 - 0.930 - - - - - - - G1 to S phase transition 1 [Source:ZFIN;Acc:ZDB-GENE-040822-36]
19. ldb1a ENSDARG00000010137 3035 0.928 - 0.928 - - - - - - - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
20. KIAA0355 3250 0.927 - 0.927 - - - - - - - KIAA0355 ortholog, transcript variant X1
21. bcs1l ENSDARG00000012295 664 0.926 - 0.926 - - - - - - - BC1 (ubiquinol-cytochrome c reductase) synthesis-like [Source:ZFIN;Acc:ZDB-GENE-040426-938]
22. insrb ENSDARG00000071524 1820 0.925 - 0.925 - - - - - - - insulin receptor b [Source:ZFIN;Acc:ZDB-GENE-020503-4]
23. lhfp 700 0.924 - 0.924 - - - - - - - lipoma HMGIC fusion partner
24. ankrd50l ENSDARG00000007077 1115 0.922 - 0.922 - - - - - - - ankyrin repeat domain 50-like [Source:ZFIN;Acc:ZDB-GENE-041008-117]
25. si:dkey-57k17.1 ENSDARG00000104697 442 0.922 - 0.922 - - - - - - - si:dkey-57k17.1 [Source:ZFIN;Acc:ZDB-GENE-110913-105]
26. coq3 ENSDARG00000069857, ENSDARG00000110000 708 0.921 - 0.921 - - - - - - - coenzyme Q3 methyltransferase [Source:ZFIN;Acc:ZDB-GENE-040718-364]
27. arid1aa ENSDARG00000101710 3644 0.921 - 0.921 - - - - - - - AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
28. katnb1 ENSDARG00000005456, ENSDARG00000110223, ENSDARG00000116933 630 0.92 - 0.920 - - - - - - - katanin p80 (WD repeat containing) subunit B 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1954]
29. exo1 ENSDARG00000056832, ENSDARG00000112534 186 0.917 - 0.917 - - - - - - - exonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2828]
30. surf1 ENSDARG00000003592 551 0.917 - 0.917 - - - - - - - surfeit 1 [Source:ZFIN;Acc:ZDB-GENE-041108-2]
31. NAIF1 ENSDARG00000062753 696 0.917 - 0.917 - - - - - - - nuclear apoptosis inducing factor 1 [Source:ZFIN;Acc:ZDB-GENE-081104-236]
32. tdrd3 ENSDARG00000025421 633 0.917 - 0.917 - - - - - - - tudor domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-19]
33. DLGAP4 DLGAP4 443 0.917 - 0.917 - - - - - - -
34. fam43a ENSDARG00000043009 792 0.916 - 0.916 - - - - - - - family with sequence similarity 43, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6098]
35. bcl7a ENSDARG00000052907, ENSDARG00000111533 962 0.915 - 0.915 - - - - - - - BCL tumor suppressor 7A [Source:ZFIN;Acc:ZDB-GENE-000607-16]
36. kif2c ENSDARG00000076228 2281 0.915 - 0.915 - - - - - - - kinesin family member 2C [Source:ZFIN;Acc:ZDB-GENE-070912-298]
37. mto1 ENSDARG00000055679 859 0.915 - 0.915 - - - - - - - mitochondrial tRNA translation optimization 1 [Source:ZFIN;Acc:ZDB-GENE-070209-253]
38. slc30a9 ENSDARG00000057272 766 0.915 - 0.915 - - - - - - - solute carrier family 30 (zinc transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-040724-254]
39. znrd1 ENSDARG00000036070 684 0.915 - 0.915 - - - - - - - zinc ribbon domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050320-131]
40. ENSDARG00000074705 ENSDARG00000074705 507 0.914 - 0.914 - - - - - - -
41. mlst8 ENSDARG00000003167, ENSDARG00000116280 541 0.914 - 0.914 - - - - - - - MTOR associated protein, LST8 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6176]
42. ncapd3 ENSDARG00000034773, ENSDARG00000111405 823 0.912 - 0.912 - - - - - - - non-SMC condensin II complex, subunit D3 [Source:ZFIN;Acc:ZDB-GENE-040426-737]
43. gna14 ENSDARG00000035178 618 0.912 - 0.912 - - - - - - - guanine nucleotide binding protein (G protein), alpha 14 [Source:ZFIN;Acc:ZDB-GENE-040808-7]
44. zzz3 ENSDARG00000077581 1343 0.912 - 0.912 - - - - - - - zinc finger, ZZ-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6450]
45. prelid1b ENSDARG00000044169 501 0.911 - 0.911 - - - - - - - PRELI domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050522-169]
46. rab34b ENSDARG00000010977 590 0.911 - 0.911 - - - - - - - RAB34, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-091118-61]
47. pou4f1 ENSDARG00000005559 821 0.911 - 0.911 - - - - - - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
48. COL4A3BP COL4A3BP 3288 0.91 - 0.910 - - - - - - -
49. HUS1 ENSDARG00000101611 187 0.91 - 0.910 - - - - - - - HUS1 checkpoint clamp component [Source:HGNC Symbol;Acc:HGNC:5309]
50. sema5a ENSDARG00000058821 333 0.909 - 0.909 - - - - - - - sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Source:ZFIN;Acc:ZDB-GENE-030131-8969]
51. pphln1 ENSDARG00000045692 1023 0.909 - - - - - - - 0.909 - periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873]
52. ankra2 ENSDARG00000035399, ENSDARG00000111289 1303 0.908 - 0.908 - - - - - - - ankyrin repeat, family A (RFXANK-like), 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2141]
53. epb41l4a ENSDARG00000040087 1013 0.908 - 0.908 - - - - - - - erythrocyte membrane protein band 4.1 like 4A [Source:ZFIN;Acc:ZDB-GENE-990415-20]
54. CR548630.1 CR548630.1 3301 0.908 - 0.908 - - - - - - -
55. faub ENSDARG00000043663, ENSDARG00000111416, ENSDARG00000113054 1451 0.908 - 0.908 - - - - - - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b [Source:ZFIN;Acc:ZDB-GENE-050417-416]
56. C18H16orf70 C18H16orf70 542 0.907 - 0.907 - - - - - - -
57. hs6st1b ENSDARG00000071501, ENSDARG00000116688 843 0.907 - 0.907 - - - - - - - heparan sulfate 6-O-sulfotransferase 1b [Source:ZFIN;Acc:ZDB-GENE-070103-2]
58. hdac6 ENSDARG00000008384 144 0.906 - 0.906 - - - - - - - histone deacetylase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3232]
59. sppl2 ENSDARG00000030448 1040 0.906 - 0.906 - - - - - - - signal peptide peptidase-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4265]
60. WNT7A WNT7A 320 0.906 - 0.906 - - - - - - -
61. pnpla7a ENSDARG00000062986 1793 0.906 - 0.906 - - - - - - - patatin-like phospholipase domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-070112-1812]
62. lyrm1 ENSDARG00000026281 303 0.906 - 0.906 - - - - - - - LYR motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-210]
63. map2k2a ENSDARG00000006609 856 0.905 - 0.905 - - - - - - - mitogen-activated protein kinase kinase 2a [Source:ZFIN;Acc:ZDB-GENE-041027-1]
64. CU861453.1 ENSDARG00000097192 271 0.905 - 0.905 - - - - - - -
65. ndst2a ENSDARG00000086269 754 0.905 - 0.905 - - - - - - - N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a [Source:ZFIN;Acc:ZDB-GENE-060810-182]
66. cry5 ENSDARG00000019498 90 0.904 - 0.904 - - - - - - - cryptochrome circadian clock 5 [Source:ZFIN;Acc:ZDB-GENE-010426-8]
67. wwp2 ENSDARG00000061345 3459 0.904 - 0.904 - - - - - - - WW domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-000607-82]
68. pdk1 ENSDARG00000013128 526 0.904 - 0.904 - - - - - - - pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
69. C11H9orf89 C11H9orf89 477 0.904 - 0.904 - - - - - - -
70. bccip ENSDARG00000004948 593 0.904 - 0.904 - - - - - - - BRCA2 and CDKN1A interacting protein [Source:ZFIN;Acc:ZDB-GENE-050320-39]
71. fahd1 ENSDARG00000031657 521 0.903 - 0.903 - - - - - - - fumarylacetoacetate hydrolase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050522-448]
72. ZNF628 1104 0.903 - 0.903 - - - - - - - zinc finger protein 628, transcript variant X3
73. vdac1 ENSDARG00000045132 8051 0.903 - 0.903 - - - - - - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
74. tmem243a ENSDARG00000042214, ENSDARG00000110407 527 0.902 - 0.902 - - - - - - - transmembrane protein 243, mitochondrial a [Source:ZFIN;Acc:ZDB-GENE-050417-264]
75. qtrtd1 243 0.902 - 0.902 - - - - - - - queuine tRNA-ribosyltransferase domain containing 1, transcript variant X1
76. asmtl ENSDARG00000021433, ENSDARG00000114151 550 0.902 - 0.902 - - - - - - - acetylserotonin O-methyltransferase-like [Source:ZFIN;Acc:ZDB-GENE-030131-2854]
77. dus4l ENSDARG00000006567 261 0.901 - 0.901 - - - - - - - dihydrouridine synthase 4-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040801-233]
78. Metazoa_SRP_7 Metazoa_SRP_7 513 0.901 - 0.901 - - - - - - -
79. ilf3a ENSDARG00000058660, ENSDARG00000116860 3760 0.901 - 0.901 - - - - - - - interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
80. nfyal ENSDARG00000001621 521 0.901 - 0.901 - - - - - - - nuclear transcription factor Y, alpha, like [Source:ZFIN;Acc:ZDB-GENE-040718-491]
81. crcp ENSDARG00000069373 730 0.901 - 0.901 - - - - - - - calcitonin gene-related peptide-receptor component protein [Source:ZFIN;Acc:ZDB-GENE-060825-150]
82. cul5a ENSDARG00000069742, ENSDARG00000112542, ENSDARG00000116292 955 0.9 - 0.900 - - - - - - - cullin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-5426]
83. TMEM184B TMEM184B 1280 0.9 - - - - - - - 0.900 -
84. ZNF281 ZNF281 1946 0.9 - 0.900 - - - - - - -
85. si:ch211-149b19.3 ENSDARG00000076011 306 0.9 - 0.900 - - - - - - - si:ch211-149b19.3 [Source:ZFIN;Acc:ZDB-GENE-110411-37]
86. skiv2l ENSDARG00000062206 268 0.899 - 0.899 - - - - - - - SKI2 homolog, superkiller viralicidic activity 2-like [Source:ZFIN;Acc:ZDB-GENE-010430-5]
87. zdhhc6 ENSDARG00000075721 1494 0.899 - 0.899 - - - - - - - zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
88. si:ch211-198b3.1 si:ch211-198b3.1 765 0.898 - 0.898 - - - - - - -
89. si:ch73-138e16.8 175 0.898 - 0.898 - - - - - - - si:ch73-138e16.8
90. dmrt2a ENSDARG00000015072, ENSDARG00000113160 895 0.898 - 0.898 - - - - - - - doublesex and mab-3 related transcription factor 2a [Source:ZFIN;Acc:ZDB-GENE-990621-7]
91. rab9b ENSDARG00000103391 813 0.898 - 0.898 - - - - - - - RAB9B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-091118-112]
92. usp1 ENSDARG00000056414 1816 0.898 - 0.898 - - - - - - - ubiquitin specific peptidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-726]
93. ttc9c ENSDARG00000007025 463 0.898 - 0.898 - - - - - - - tetratricopeptide repeat domain 9C [Source:ZFIN;Acc:ZDB-GENE-040426-1053]
94. pcnxl4 377 0.898 - 0.898 - - - - - - - pecanex-like 4 (Drosophila), transcript variant X2
95. C18H15orf61 C18H15orf61 104 0.897 - 0.897 - - - - - - -
96. zgc:162232 zgc:162232 251 0.897 - 0.897 - - - - - - -
97. PHF13 ENSDARG00000102023 1102 0.897 - 0.897 - - - - - - - PHD finger protein 13 [Source:ZFIN;Acc:ZDB-GENE-121113-2]
98. NTAN1 ENSDARG00000105182 844 0.896 - 0.896 - - - - - - - N-terminal asparagine amidase [Source:ZFIN;Acc:ZDB-GENE-040426-1896]
99. nol9 ENSDARG00000077751 2471 0.896 - 0.896 - - - - - - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
100. drd3 ENSDARG00000032131, ENSDARG00000110679 25 0.896 - 0.896 - - - - - - - dopamine receptor D3 [Source:ZFIN;Acc:ZDB-GENE-021119-1]

There are 731 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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