Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rpusd4

Gene Name Gene ID Reads Annotation
rpusd4 ENSDARG00000012674, ENSDARG00000112436 505 RNA pseudouridylate synthase domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040801-238]










Genes with expression patterns similar to rpusd4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpusd4 ENSDARG00000012674, ENSDARG00000112436 505 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA pseudouridylate synthase domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040801-238]
2. si:ch211-113e8.10 ENSDARG00000079631 498 1.806 0.870 - - - - - - - 0.936 si:ch211-113e8.10 [Source:ZFIN;Acc:ZDB-GENE-090313-11]
3. CR678040.1 CR678040.1 117 1.77 0.807 - - - - - - - 0.963
4. slc16a8 ENSDARG00000045153 478 1.762 - - - - - 0.790 - - 0.972 solute carrier family 16 (monocarboxylate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-121128-1]
5. CU861453.1 ENSDARG00000097192 271 1.724 0.761 - - - - - - - 0.963
6. si:dkey-156k2.6 si:dkey-156k2.6 848 1.722 - 0.754 - - - - - - 0.968
7. NUMA1_2 NUMA1_2 2897 1.669 - - - 0.752 - - - - 0.917
8. CFP ENSDARG00000094451 852 1.666 0.761 - - - - - - - 0.905 complement factor properdin [Source:ZFIN;Acc:ZDB-GENE-030131-9247]
9. pus7 ENSDARG00000031774 195 1.665 - - - - - - 0.707 - 0.958 pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
10. triap1 ENSDARG00000014963 646 1.657 - - - - - 0.713 - - 0.944 TP53 regulated inhibitor of apoptosis 1 [Source:ZFIN;Acc:ZDB-GENE-050417-161]
11. CCDC106 CCDC106 1908 1.653 - 0.706 - - - - - - 0.947
12. bmpr1bb ENSDARG00000102742 1036 1.625 - - - - - - 0.708 - 0.917 bone morphogenetic protein receptor, type IBb [Source:ZFIN;Acc:ZDB-GENE-090610-1]
13. psmg1 ENSDARG00000040620 1359 1.624 - 0.716 - - - - - - 0.908 proteasome (prosome, macropain) assembly chaperone 1 [Source:ZFIN;Acc:ZDB-GENE-040718-469]
14. rbm42 ENSDARG00000039910 1111 1.612 - - - 0.705 - - - - 0.907 RNA binding motif protein 42 [Source:ZFIN;Acc:ZDB-GENE-040809-2]
15. ccdc80 ENSDARG00000000002 1284 1.607 - - - - - - 0.740 - 0.867 coiled-coil domain containing 80 [Source:ZFIN;Acc:ZDB-GENE-030616-56]
16. spag1a ENSDARG00000004017 1140 1.577 0.795 - - 0.782 - - - - - sperm associated antigen 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9443]
17. espl1 ENSDARG00000075354 818 1.5 - 0.720 - - - - - - 0.780 extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
18. ssb ENSDARG00000029252 3394 1.492 - - - - - 0.725 - - 0.767 Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
19. si:dkey-38p12.2 si:dkey-38p12.2 504 1.46 0.734 0.726 - - - - - - -
20. foxa1 ENSDARG00000102138 1797 1.446 - 0.713 - - - - - - 0.733 forkhead box A1 [Source:ZFIN;Acc:ZDB-GENE-990415-78]
21. alpk2 ENSDARG00000079637 1483 1.435 - 0.732 - - - - 0.703 - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
22. HPDL ENSDARG00000113721 264 1.425 0.709 - - - - - 0.716 - - 4-hydroxyphenylpyruvate dioxygenase like [Source:HGNC Symbol;Acc:HGNC:28242]
23. rab11fip3 ENSDARG00000016490 661 0.975 - - - - - - - - 0.975 RAB11 family interacting protein 3 (class II) [Source:ZFIN;Acc:ZDB-GENE-040724-138]
24. oraov1 497 0.973 - - - - - - - - 0.973 oral cancer overexpressed 1
25. RNPEPL1 ENSDARG00000007813 557 0.972 - - - - - - - - 0.972 arginyl aminopeptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5522]
26. zgc:173480 171 0.972 - - - - - - - - 0.972 zgc:173480
27. CABZ01054405.1 CABZ01054405.1 115 0.971 - - - - - - - - 0.971
28. rxrgb ENSDARG00000004697 332 0.971 - - - - - - - - 0.971 retinoid X receptor, gamma b [Source:ZFIN;Acc:ZDB-GENE-040718-34]
29. ZNFX1 ENSDARG00000100280 118 0.97 - - - - - - - - 0.970 zinc finger, NFX1-type containing 1 [Source:ZFIN;Acc:ZDB-GENE-110804-2]
30. ZFAT ENSDARG00000077987 205 0.969 - - - - - - - - 0.969 zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
31. nupl2 ENSDARG00000029043 105 0.969 - - - - - - - - 0.969 nucleoporin like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2292]
32. abcg1 ENSDARG00000063475 97 0.969 - - - - - - - - 0.969 ATP-binding cassette, sub-family G (WHITE), member 1 [Source:ZFIN;Acc:ZDB-GENE-070424-84]
33. slc6a6a ENSDARG00000012534 183 0.968 - - - - - - - - 0.968 solute carrier family 6 (neurotransmitter transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-081104-1]
34. CTIF ENSDARG00000090617 270 0.968 - - - - - - - - 0.968 CBP80/20-dependent translation initiation factor [Source:ZFIN;Acc:ZDB-GENE-130530-1003]
35. AKAP12 AKAP12 140 0.967 - - - - - - - - 0.967
36. PRDM12 PRDM12 133 0.967 - - - - - - - - 0.967
37. C7H11orf68 C7H11orf68 446 0.966 - - - - - - - - 0.966
38. ptprk ENSDARG00000063416 742 0.966 - - - - - - - - 0.966 protein tyrosine phosphatase, receptor type, K [Source:ZFIN;Acc:ZDB-GENE-030131-9834]
39. gpr143 ENSDARG00000034572 559 0.966 - - - - - - - - 0.966 G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
40. dkk3b ENSDARG00000070683 209 0.966 - - - - - - - - 0.966 dickkopf WNT signaling pathway inhibitor 3b [Source:ZFIN;Acc:ZDB-GENE-061207-74]
41. flrt1a 107 0.966 - - - - - - - - 0.966 fibronectin leucine rich transmembrane protein 1a, transcript variant X2
42. dhrs13a.2 ENSDARG00000111240 491 0.965 - - - - - - - - 0.965 dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
43. RABEPK ENSDARG00000112165 112 0.965 - - - - - - - - 0.965 Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
44. KLF8 ENSDARG00000060661 219 0.965 - - - - - - - - 0.965 Kruppel-like factor 8 [Source:ZFIN;Acc:ZDB-GENE-070424-152]
45. wnt2bb ENSDARG00000032234, ENSDARG00000110703 273 0.965 - - - - - - - - 0.965 wingless-type MMTV integration site family, member 2Bb [Source:ZFIN;Acc:ZDB-GENE-060824-6]
46. ltc4s ENSDARG00000062598 138 0.965 - - - - - - - - 0.965 leukotriene C4 synthase [Source:ZFIN;Acc:ZDB-GENE-110411-32]
47. si:dkey-153k10.9 ENSDARG00000004386, ENSDARG00000109564, ENSDARG00000111507 319 0.964 - - - - - - - - 0.964 si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
48. brms1lb ENSDARG00000018047 453 0.964 - - - - - - - - 0.964 BRMS1 like transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-081031-54]
49. SNAP91 ENSDARG00000098809 556 0.964 - - - - - - - - 0.964 synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
50. vcp ENSDARG00000020008, ENSDARG00000116074 2284 0.964 - - - - - - - - 0.964 valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
51. slc25a43 ENSDARG00000102048 489 0.964 - - - - - - - - 0.964 solute carrier family 25, member 43 [Source:ZFIN;Acc:ZDB-GENE-030616-69]
52. rac3a ENSDARG00000090062 394 0.963 - - - - - - - - 0.963 Rac family small GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-040718-256]
53. ptn ENSDARG00000102340 229 0.963 - - - - - - - - 0.963 pleiotrophin [Source:ZFIN;Acc:ZDB-GENE-030624-1]
54. eef2a.1 ENSDARG00000042094 1781 0.963 - - - - - - - - 0.963 eukaryotic translation elongation factor 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-500]
55. prmt6 ENSDARG00000069706 484 0.963 - - - - - - - - 0.963 protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
56. ror1 ENSDARG00000015176 378 0.963 - - - - - - - - 0.963 receptor tyrosine kinase-like orphan receptor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6104]
57. pif1 ENSDARG00000020289 216 0.963 - - - - - - - - 0.963 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
58. ttc21b ENSDARG00000012368 229 0.963 - - - - - - - - 0.963 tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
59. hck ENSDARG00000058647 318 0.963 - - - - - - - - 0.963 HCK proto-oncogene, Src family tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-090313-72]
60. ube3d ENSDARG00000026178 244 0.962 - - - - - - - - 0.962 ubiquitin protein ligase E3D [Source:ZFIN;Acc:ZDB-GENE-091218-3]
61. rnf121 ENSDARG00000060282 1809 0.962 - - - - - - - - 0.962 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
62. nol8 ENSDARG00000044143 425 0.962 - - - - - - - - 0.962 nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
63. umps ENSDARG00000012215 4564 0.962 - - - - - - - - 0.962 uridine monophosphate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-785]
64. trim16 ENSDARG00000010673 519 0.961 - - - - - - - - 0.961 tripartite motif containing 16 [Source:ZFIN;Acc:ZDB-GENE-090512-6]
65. ctnnal1 ENSDARG00000018162 747 0.961 - - - - - - - - 0.961 catenin (cadherin-associated protein), alpha-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-507]
66. cenpk ENSDARG00000039616 744 0.961 - - - - - - - - 0.961 centromere protein K [Source:ZFIN;Acc:ZDB-GENE-090313-204]
67. RFFL_1 RFFL_1 157 0.961 - - - - - - - - 0.961
68. CR376785.2 CR376785.2 175 0.961 - - - - - - - - 0.961
69. TAF2 ENSDARG00000102307 1401 0.961 - - - - - - - - 0.961 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
70. st8sia5 ENSDARG00000036584 529 0.961 - - - - - - - - 0.961 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
71. AL929322.1 AL929322.1 300 0.961 - - - - - - - - 0.961
72. rcbtb1 ENSDARG00000036645 255 0.96 - - - - - - - - 0.960 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7951]
73. si:ch211-133l11.10 ENSDARG00000005626 381 0.96 - - - - - - - - 0.960 si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
74. ncam2 ENSDARG00000017466 175 0.96 - - - - - - - - 0.960 neural cell adhesion molecule 2 [Source:ZFIN;Acc:ZDB-GENE-010822-1]
75. ZNF518B 475 0.96 - - - - - - - - 0.960 zinc finger protein 518B
76. ngly1 ENSDARG00000003205 733 0.96 - - - - - - - - 0.960 N-glycanase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-535]
77. jph3 ENSDARG00000102204 175 0.959 - - - - - - - - 0.959 junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
78. nrxn3b ENSDARG00000062693 192 0.959 - - - - - - - - 0.959 neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
79. dvl1b ENSDARG00000055552 146 0.959 - - - - - - - - 0.959 dishevelled segment polarity protein 1b [Source:ZFIN;Acc:ZDB-GENE-071004-1]
80. fam122b ENSDARG00000036500, ENSDARG00000116582 1408 0.959 - - - - - - - - 0.959 family with sequence similarity 122B [Source:ZFIN;Acc:ZDB-GENE-040801-204]
81. si:dkey-10p5.10 ENSDARG00000099307 371 0.958 - - - - - - - - 0.958 si:dkey-10p5.10 [Source:ZFIN;Acc:ZDB-GENE-120215-130]
82. nsun2 ENSDARG00000056665 740 0.958 - - - - - - - - 0.958 NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
83. dhdds ENSDARG00000039851 1135 0.957 - - - - - - - - 0.957 dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
84. sema4ab ENSDARG00000062352 409 0.957 - - - - - - - - 0.957 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
85. hprt1l ENSDARG00000014866 696 0.957 - - - - - - - - 0.957 hypoxanthine phosphoribosyltransferase 1, like [Source:ZFIN;Acc:ZDB-GENE-040625-17]
86. pigl ENSDARG00000067752, ENSDARG00000116105 282 0.956 - - - - - - - - 0.956 phosphatidylinositol glycan anchor biosynthesis, class L [Source:ZFIN;Acc:ZDB-GENE-050506-60]
87. GANAB_1 GANAB_1 685 0.956 - - - - - - - - 0.956
88. lsm1 ENSDARG00000043177 767 0.955 - - - - - - - - 0.955 LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]
89. TUBB8P7_2 TUBB8P7_2 565 0.955 - - - - - - - - 0.955
90. hdac10 ENSDARG00000086458 676 0.955 - - - - - - - - 0.955 histone deacetylase 10 [Source:ZFIN;Acc:ZDB-GENE-030131-5464]
91. qser1 ENSDARG00000074750 597 0.955 - - - - - - - - 0.955 glutamine and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2978]
92. dopey1 438 0.955 - - - - - - - - 0.955 dopey family member 1, transcript variant X4
93. tspan5b ENSDARG00000070449 1056 0.955 - - - - - - - - 0.955 tetraspanin 5b [Source:ZFIN;Acc:ZDB-GENE-041212-12]
94. smg6 ENSDARG00000100481 493 0.954 - - - - - - - - 0.954 SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
95. CEP152 ENSDARG00000075725 391 0.954 - - - - - - - - 0.954 centrosomal protein 152 [Source:ZFIN;Acc:ZDB-GENE-111005-1]
96. etv1 ENSDARG00000101959 358 0.954 - - - - - - - - 0.954 ets variant 1 [Source:ZFIN;Acc:ZDB-GENE-070104-1]
97. WAPAL_1 WAPAL_1 205 0.953 - - - - - - - - 0.953
98. ZNF337_4 ZNF337_4 409 0.953 - - - - - - - - 0.953
99. mafg2 mafg2 1041 0.953 - - - - - - - - 0.953
100. kcnq5a ENSDARG00000069954 492 0.953 - - - - - - - - 0.953 potassium voltage-gated channel, KQT-like subfamily, member 5a [Source:ZFIN;Acc:ZDB-GENE-090312-185]

There are 951 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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