Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rpusd1

Gene Name Gene ID Reads Annotation
rpusd1 ENSDARG00000060192 86 RNA pseudouridylate synthase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-444]










Genes with expression patterns similar to rpusd1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpusd1 ENSDARG00000060192 86 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA pseudouridylate synthase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-444]
2. si:ch211-92l17.1 ENSDARG00000094584 18 1.867 0.993 0.874 - - - - - - - si:ch211-92l17.1 [Source:ZFIN;Acc:ZDB-GENE-041210-113]
3. kdr ENSDARG00000017321 31 1.83 0.948 0.882 - - - - - - - kinase insert domain receptor (a type III receptor tyrosine kinase) [Source:ZFIN;Acc:ZDB-GENE-041001-112]
4. si:dkeyp-30e7.2 ENSDARG00000094387 87 1.772 0.964 - - - 0.808 - - - - si:dkeyp-30e7.2 [Source:ZFIN;Acc:ZDB-GENE-081104-498]
5. ftr64 ENSDARG00000101514 33 1.763 0.959 - - - - 0.804 - - - finTRIM family, member 64 [Source:ZFIN;Acc:ZDB-GENE-090508-8]
6. AGAP3_1 AGAP3_1 18 1.743 1.000 0.743 - - - - - - -
7. sv2 ENSDARG00000091833 22 1.737 0.993 0.744 - - - - - - - synaptic vesicle glycoprotein 2 [Source:ZFIN;Acc:ZDB-GENE-000607-80]
8. CU041398.1 CU041398.1 17 1.726 0.993 0.733 - - - - - - -
9. sh3bp5b ENSDARG00000103978 513 1.718 0.803 0.915 - - - - - - - SH3-domain binding protein 5b (BTK-associated) [Source:ZFIN;Acc:ZDB-GENE-040426-2813]
10. CEACAM7 CEACAM7 46 1.708 0.950 - - - 0.758 - - - -
11. si:busm1-266f07.2 ENSDARG00000031745 19 1.667 0.873 - - - - 0.794 - - - si:busm1-266f07.2 [Source:ZFIN;Acc:ZDB-GENE-030616-436]
12. b3gnt7 ENSDARG00000038489 29 1.625 0.909 0.716 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:ZFIN;Acc:ZDB-GENE-021210-4]
13. JTB ENSDARG00000070150 135 1.623 0.802 - - - - - 0.821 - - jumping translocation breakpoint [Source:ZFIN;Acc:ZDB-GENE-060503-674]
14. her11 ENSDARG00000002707 29 1.602 - - - - 0.751 0.851 - - - hairy-related 11 [Source:ZFIN;Acc:ZDB-GENE-040824-4]
15. paqr6 ENSDARG00000041483 795 1.587 0.829 0.758 - - - - - - - progestin and adipoQ receptor family member VI [Source:ZFIN;Acc:ZDB-GENE-090714-1]
16. CLN5 ENSDARG00000076339 377 1.568 0.799 - - - - - 0.769 - - CLN5, intracellular trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060908-1]
17. sass6 ENSDARG00000058346 225 1.543 0.838 0.705 - - - - - - - SAS-6 centriolar assembly protein [Source:ZFIN;Acc:ZDB-GENE-040426-2784]
18. med30 ENSDARG00000101115 133 1.541 - - - - 0.792 0.749 - - - mediator complex subunit 30 [Source:ZFIN;Acc:ZDB-GENE-040426-1676]
19. kif16ba ENSDARG00000100225 114 1.535 0.811 0.724 - - - - - - - kinesin family member 16Ba [Source:ZFIN;Acc:ZDB-GENE-090313-233]
20. zgc:114037_4 57 1.519 - 0.782 - - 0.737 - - - - zgc:114037
21. got2a ENSDARG00000041068, ENSDARG00000114282 693 1.518 0.802 0.716 - - - - - - - glutamic-oxaloacetic transaminase 2a, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040426-2703]
22. ptges ENSDARG00000020136, ENSDARG00000115727 747 1.502 0.755 0.747 - - - - - - - prostaglandin E synthase [Source:ZFIN;Acc:ZDB-GENE-050407-2]
23. CABZ01081748.1 ENSDARG00000102139 31 1.493 - 0.716 - - 0.777 - - - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100007471]
24. zhx2 zhx2 365 1.463 0.717 - - - 0.746 - - - -
25. CABZ01074899.1 CABZ01074899.1 89 1.459 - - - - 0.746 0.713 - - -
26. zgc:162344 ENSDARG00000070040 126 1.444 - 0.731 - - 0.713 - - - - zgc:162344 [Source:ZFIN;Acc:ZDB-GENE-030131-6058]
27. fabp6 ENSDARG00000044566 46 1.441 - 0.713 - - - - 0.728 - - fatty acid binding protein 6, ileal (gastrotropin) [Source:ZFIN;Acc:ZDB-GENE-040625-49]
28. si:dkey-56m15.5 ENSDARG00000103420 229 1.42 - 0.707 - - - 0.713 - - - si:dkey-56m15.5 [Source:ZFIN;Acc:ZDB-GENE-110913-134]
29. tmem129 ENSDARG00000075346 109 1.413 0.712 - - - - - - - 0.701 transmembrane protein 129, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-2796]
30. LARS2 ENSDARG00000075337 181 1 1.000 - - - - - - - - leucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070928-3]
31. si:dkeyp-123a12.2 ENSDARG00000115029 78 1 1.000 - - - - - - - - si:dkeyp-123a12.2 [Source:ZFIN;Acc:ZDB-GENE-041210-271]
32. PLXNB2_1 PLXNB2_1 10 1 1.000 - - - - - - - -
33. zgc:123297 ENSDARG00000056798, ENSDARG00000102158 62 1 1.000 - - - - - - - - zgc:123297 [Source:ZFIN;Acc:ZDB-GENE-051127-9]
34. large 9 0.993 0.993 - - - - - - - - like-glycosyltransferase, transcript variant X1
35. TRIM14_3 TRIM14_3 7 0.993 0.993 - - - - - - - -
36. BICD2_1 BICD2_1 18 0.993 0.993 - - - - - - - -
37. si:ch211-89f22.1 si:ch211-89f22.1 11 0.993 0.993 - - - - - - - -
38. CU367845.1_1 CU367845.1_1 43 0.993 0.993 - - - - - - - -
39. CLCN2 CLCN2 8 0.993 0.993 - - - - - - - -
40. si:dkey-88e10.2 si:dkey-88e10.2 7 0.993 0.993 - - - - - - - -
41. si:ch211-165f21.6 si:ch211-165f21.6 5 0.993 0.993 - - - - - - - -
42. AGO3 AGO3 12 0.993 0.993 - - - - - - - -
43. xpnpep2 ENSDARG00000026017 16 0.993 0.993 - - - - - - - - X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound [Source:ZFIN;Acc:ZDB-GENE-040426-1151]
44. si:ch211-145h19.2 7 0.993 0.993 - - - - - - - - si:ch211-145h19.2
45. PKN1 PKN1 42 0.993 0.993 - - - - - - - -
46. cenpv ENSDARG00000092285 10 0.993 0.993 - - - - - - - - centromere protein V [Source:ZFIN;Acc:ZDB-GENE-060526-76]
47. irf4b ENSDARG00000055374, ENSDARG00000115381 4 0.993 0.993 - - - - - - - - interferon regulatory factor 4b [Source:ZFIN;Acc:ZDB-GENE-041001-131]
48. abhd2b ENSDARG00000045804, ENSDARG00000115068 23 0.993 0.993 - - - - - - - - abhydrolase domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-061027-74]
49. gba2 ENSDARG00000061472 171 0.993 0.993 - - - - - - - - glucosidase, beta (bile acid) 2 [Source:ZFIN;Acc:ZDB-GENE-070522-3]
50. gata4 ENSDARG00000098952 11 0.993 0.993 - - - - - - - - GATA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-980526-476]
51. bspry ENSDARG00000104875 63 0.993 0.993 - - - - - - - - B-box and SPRY domain containing [Source:ZFIN;Acc:ZDB-GENE-060526-219]
52. cgna ENSDARG00000055607 11 0.993 0.993 - - - - - - - - cingulin a [Source:ZFIN;Acc:ZDB-GENE-100921-78]
53. si:ch211-199c19.4 si:ch211-199c19.4 27 0.993 0.993 - - - - - - - -
54. BX323448.1 ENSDARG00000116236 10 0.993 0.993 - - - - - - - -
55. soul5l ENSDARG00000089879 20 0.989 0.989 - - - - - - - - heme-binding protein soul5, like [Source:ZFIN;Acc:ZDB-GENE-121214-315]
56. fam129aa ENSDARG00000042055 222 0.988 0.988 - - - - - - - - family with sequence similarity 129, member Aa [Source:ZFIN;Acc:ZDB-GENE-041014-181]
57. casp3b ENSDARG00000055045 54 0.987 0.987 - - - - - - - - caspase 3, apoptosis-related cysteine peptidase b [Source:ZFIN;Acc:ZDB-GENE-070607-1]
58. ano5b ENSDARG00000036147 89 0.985 0.985 - - - - - - - - anoctamin 5b [Source:ZFIN;Acc:ZDB-GENE-061215-108]
59. im:7136021 ENSDARG00000054128 79 0.983 0.983 - - - - - - - - im:7136021 [Source:ZFIN;Acc:ZDB-GENE-041008-74]
60. si:ch211-281g2.4 si:ch211-281g2.4 121 0.981 0.981 - - - - - - - -
61. acvrl1 ENSDARG00000018179 308 0.98 0.980 - - - - - - - - activin A receptor like type 1 [Source:ZFIN;Acc:ZDB-GENE-021003-1]
62. obfc1 obfc1 156 0.979 0.979 - - - - - - - -
63. ndufs8b ENSDARG00000057055 10 0.979 0.979 - - - - - - - - NADH:ubiquinone oxidoreductase core subunit S8b [Source:ZFIN;Acc:ZDB-GENE-050522-131]
64. slc41a1 ENSDARG00000070214, ENSDARG00000114707 20 0.979 0.979 - - - - - - - - solute carrier family 41 (magnesium transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4700]
65. AL929007.2 AL929007.2 117 0.978 0.978 - - - - - - - -
66. cacng6a ENSDARG00000036457 344 0.977 0.977 - - - - - - - - calcium channel, voltage-dependent, gamma subunit 6a [Source:ZFIN;Acc:ZDB-GENE-060503-440]
67. BX664752.1 BX664752.1 64 0.976 0.976 - - - - - - - -
68. MAGI3 MAGI3 114 0.975 0.975 - - - - - - - -
69. MAL_1 MAL_1 200 0.975 0.975 - - - - - - - -
70. ppp1r12c ENSDARG00000052423 183 0.973 0.973 - - - - - - - - protein phosphatase 1, regulatory subunit 12C [Source:ZFIN;Acc:ZDB-GENE-010724-11]
71. si:dkey-262g12.3 ENSDARG00000094612 41 0.97 0.970 - - - - - - - - si:dkey-262g12.3 [Source:ZFIN;Acc:ZDB-GENE-060503-255]
72. sp7 ENSDARG00000019516 266 0.969 0.969 - - - - - - - - Sp7 transcription factor [Source:ZFIN;Acc:ZDB-GENE-040629-2]
73. si:dkeyp-13a3.9 si:dkeyp-13a3.9 362 0.964 0.964 - - - - - - - -
74. zgc:174563 zgc:174563 198 0.963 0.963 - - - - - - - -
75. prkcbb ENSDARG00000022254 319 0.963 0.963 - - - - - - - - protein kinase C, beta b [Source:ZFIN;Acc:ZDB-GENE-040426-1178]
76. ENSDARG00000035683 ENSDARG00000035683 219 0.963 0.963 - - - - - - - -
77. CR848029.2 CR848029.2 215 0.961 0.961 - - - - - - - -
78. SLC22A15 ENSDARG00000055445 111 0.961 0.961 - - - - - - - - solute carrier family 22, member 15 [Source:ZFIN;Acc:ZDB-GENE-070928-5]
79. sqlea ENSDARG00000079946 145 0.961 0.961 - - - - - - - - squalene epoxidase a [Source:ZFIN;Acc:ZDB-GENE-071004-98]
80. CT990569.2 CT990569.2 531 0.96 0.960 - - - - - - - -
81. CT574587.1 ENSDARG00000097915 383 0.958 0.958 - - - - - - - -
82. si:ch211-215p11.4 si:ch211-215p11.4 67 0.956 0.956 - - - - - - - -
83. calhm2 ENSDARG00000039482 138 0.954 0.954 - - - - - - - - calcium homeostasis modulator 2 [Source:ZFIN;Acc:ZDB-GENE-030616-561]
84. NETO2 121 0.953 0.953 - - - - - - - - neuropilin and tolloid like 2, transcript variant X2
85. ITGAL ITGAL 277 0.952 0.952 - - - - - - - -
86. acbd4 ENSDARG00000027070 52 0.95 0.950 - - - - - - - - acyl-CoA binding domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2074]
87. rabgef1l ENSDARG00000015968 38 0.949 0.949 - - - - - - - - RAB guanine nucleotide exchange factor (GEF) 1, like [Source:ZFIN;Acc:ZDB-GENE-040426-813]
88. sc:d0139 sc:d0139 233 0.948 0.948 - - - - - - - -
89. si:dkeyp-73a2.2 ENSDARG00000079785 313 0.948 0.948 - - - - - - - - si:dkeyp-73a2.2 [Source:NCBI gene;Acc:100307112]
90. nudt14 ENSDARG00000062335, ENSDARG00000111320 294 0.947 - - - - - 0.947 - - - nudix (nucleoside diphosphate linked moiety X)-type motif 14 [Source:ZFIN;Acc:ZDB-GENE-041014-254]
91. TMEM182 TMEM182 78 0.946 0.946 - - - - - - - -
92. SHF SHF 92 0.945 0.945 - - - - - - - -
93. tmem68 ENSDARG00000086737 209 0.944 0.944 - - - - - - - - transmembrane protein 68 [Source:ZFIN;Acc:ZDB-GENE-040426-1267]
94. snoMBII-202_2 snoMBII-202_2 72 0.943 0.943 - - - - - - - -
95. zgc:195633 19 0.943 0.943 - - - - - - - - zgc:195633
96. BRSK2 BRSK2 66 0.941 - - - - - - 0.941 - -
97. HPS6 265 0.941 0.941 - - - - - - - - HPS6, biogenesis of lysosomal organelles complex 2 subunit 3
98. cyb5d2 ENSDARG00000061006, ENSDARG00000109422 75 0.939 0.939 - - - - - - - - cytochrome b5 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050506-83]
99. zbtb34 ENSDARG00000013492 32 0.939 0.939 - - - - - - - - zinc finger and BTB domain containing 34 [Source:ZFIN;Acc:ZDB-GENE-050624-2]
100. CU683898.1 CU683898.1 203 0.937 0.937 - - - - - - - -

There are 684 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA