Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rps28

Gene Name Gene ID Reads Annotation
rps28 ENSDARG00000035860 34765 ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-030131-2022]










Genes with expression patterns similar to rps28

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rps28 ENSDARG00000035860 34765 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-030131-2022]
2. rps25 ENSDARG00000041811 52182 2.468 0.811 - 0.845 - - - 0.812 - - ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
3. USMG5 USMG5 10356 2.415 0.763 - - 0.725 - - 0.927 - -
4. pfn2l ENSDARG00000012682 21690 2.387 - 0.747 - - - 0.790 0.850 - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
5. syne2b ENSDARG00000053484 9225 2.307 - - - - 0.803 0.738 0.766 - - spectrin repeat containing, nuclear envelope 2b [Source:ZFIN;Acc:ZDB-GENE-071218-5]
6. rpl23a ENSDARG00000006316 59831 2.249 0.732 - - 0.702 - - 0.815 - - ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
7. ndufa9 ndufa9 8846 1.804 - - - - - - 0.874 - 0.930
8. ndufs6 ENSDARG00000056583 7220 1.766 - - - - - - 0.844 - 0.922 NADH:ubiquinone oxidoreductase subunit S6 [Source:ZFIN;Acc:ZDB-GENE-040912-86]
9. rpl30 ENSDARG00000035871, ENSDARG00000109253 56661 1.749 - - - - 0.808 - 0.941 - - ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
10. rps18 ENSDARG00000100392 64615 1.723 - - 0.813 - - - 0.910 - - ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
11. cox7c ENSDARG00000104537 12169 1.719 0.791 - - - - - 0.928 - - cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
12. atp5e 14858 1.667 0.760 - - - - - 0.907 - - ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
13. eif3i ENSDARG00000017445 21149 1.662 0.742 - - - - - 0.920 - - eukaryotic translation initiation factor 3, subunit I [Source:ZFIN;Acc:ZDB-GENE-040426-1922]
14. cox6b2 ENSDARG00000037860 33134 1.648 0.720 - - - - - 0.928 - - cytochrome c oxidase subunit 6B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]
15. hypk ENSDARG00000059725 20584 1.647 - - - 0.719 - - 0.928 - - huntingtin interacting protein K [Source:ZFIN;Acc:ZDB-GENE-080515-6]
16. rpl22 ENSDARG00000070437 56743 1.641 - 0.718 - - - - 0.923 - - ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
17. ndufb11 ENSDARG00000043467 7495 1.638 0.755 - - - - - 0.883 - - NADH:ubiquinone oxidoreductase subunit B11 [Source:ZFIN;Acc:ZDB-GENE-050309-25]
18. cnbpb ENSDARG00000070922 14606 1.635 0.780 - - - - - 0.855 - - CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
19. RPL37A RPL37A 62256 1.633 0.874 - - 0.759 - - - - -
20. faua ENSDARG00000099022 82901 1.625 0.701 - - - - - 0.924 - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
21. sdhb ENSDARG00000075768 5493 1.622 - - - - - 0.775 0.847 - - succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:ZFIN;Acc:ZDB-GENE-030131-8005]
22. ndufa12 ENSDARG00000042469, ENSDARG00000116793 3843 1.617 - - - - - 0.764 0.853 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:ZFIN;Acc:ZDB-GENE-050828-1]
23. tma7 ENSDARG00000071670 13372 1.601 0.784 - - - - - 0.817 - - translation machinery associated 7 homolog [Source:ZFIN;Acc:ZDB-GENE-061027-176]
24. UBAP2 UBAP2 3818 1.599 - - - - 0.800 - 0.799 - -
25. naa10 ENSDARG00000071060, ENSDARG00000111093, ENSDARG00000116173 4657 1.592 0.706 - - - - - 0.886 - - N(alpha)-acetyltransferase 10, NatA catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2648]
26. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.589 0.703 - - - - - 0.886 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
27. ptp4a1 ENSDARG00000006242 10267 1.587 - - - - - 0.722 0.865 - - protein tyrosine phosphatase type IVA, member 1 [Source:ZFIN;Acc:ZDB-GENE-041121-11]
28. cct8 ENSDARG00000008243 6843 1.585 0.760 - - - - - 0.825 - - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
29. ndufa2 ENSDARG00000021984 4754 1.584 - - - - - 0.770 0.814 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:ZFIN;Acc:ZDB-GENE-050522-377]
30. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.582 - - - - - 0.775 0.807 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
31. vapb ENSDARG00000070435, ENSDARG00000112097 6469 1.581 - - - - - 0.752 0.829 - - VAMP (vesicle-associated membrane protein)-associated protein B and C [Source:ZFIN;Acc:ZDB-GENE-030131-2348]
32. aimp2 ENSDARG00000018903 5797 1.58 0.730 - - - - - 0.850 - - aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2652]
33. cct3 ENSDARG00000016173 15869 1.579 0.737 - - - - - 0.842 - - chaperonin containing TCP1, subunit 3 (gamma) [Source:ZFIN;Acc:ZDB-GENE-020419-5]
34. lman2 ENSDARG00000061854 6251 1.578 - - - - 0.796 0.782 - - - lectin, mannose-binding 2 [Source:ZFIN;Acc:ZDB-GENE-070209-149]
35. lsm6 ENSDARG00000036995 4377 1.574 0.724 - - - - - 0.850 - - LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]
36. minos1 ENSDARG00000101619 5273 1.571 - - - - - 0.750 0.821 - - mitochondrial inner membrane organizing system 1 [Source:ZFIN;Acc:ZDB-GENE-060825-325]
37. hspb8 ENSDARG00000058365, ENSDARG00000109236 8688 1.566 - - - - - 0.734 0.832 - - heat shock protein b8 [Source:ZFIN;Acc:ZDB-GENE-030131-2480]
38. pbxip1a ENSDARG00000071015 4960 1.563 - - - - - 0.759 0.804 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
39. nudt3a ENSDARG00000016256 2713 1.561 - - - - 0.717 - 0.844 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
40. pl10 pl10 10795 1.559 - - - - 0.799 - 0.760 - -
41. PYURF ENSDARG00000045773 4576 1.552 - - - - - 0.780 0.772 - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
42. pa2g4a ENSDARG00000039578, ENSDARG00000115881 16166 1.545 0.709 - - - - - 0.836 - - proliferation-associated 2G4, a [Source:ZFIN;Acc:ZDB-GENE-030616-161]
43. ifrd2 ENSDARG00000036811, ENSDARG00000115385 3697 1.538 - - - - 0.721 - 0.817 - - interferon-related developmental regulator 2 [Source:ZFIN;Acc:ZDB-GENE-040801-140]
44. dyrk2 ENSDARG00000094646 2163 1.537 - - - - - 0.780 0.757 - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2804]
45. abcf1 ENSDARG00000031795 8635 1.536 0.747 - - - - - 0.789 - - ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
46. coq9 ENSDARG00000023583, ENSDARG00000110255, ENSDARG00000111424 6051 1.536 - - - - - 0.727 0.809 - - coenzyme Q9 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061207-37]
47. tnnt2c ENSDARG00000032242 28801 1.53 - - - - - 0.762 0.768 - - troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
48. sox6 ENSDARG00000015536 7728 1.53 0.707 - - - - - 0.823 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
49. atp5g3a 9539 1.529 - - - - - 0.776 0.753 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9), genome duplicate a
50. ppp1r3cb ENSDARG00000014554 2507 1.525 - - - - - 0.762 0.763 - - protein phosphatase 1, regulatory subunit 3Cb [Source:ZFIN;Acc:ZDB-GENE-040426-1733]
51. sumo1 ENSDARG00000044267 4242 1.524 - - - - - 0.778 0.746 - - small ubiquitin-like modifier 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2186]
52. glra4a ENSDARG00000006865, ENSDARG00000109562 1117 1.523 - - - - - 0.779 0.744 - - glycine receptor, alpha 4a [Source:ZFIN;Acc:ZDB-GENE-010410-3]
53. gstm gstm 4064 1.522 0.710 - - - - - 0.812 - -
54. rps23 ENSDARG00000021838 145026 1.521 0.734 - - - - 0.787 - - - ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. myod1 ENSDARG00000030110 6019 1.52 0.714 - - - - - 0.806 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
56. pex19 ENSDARG00000004891 2317 1.519 - - - - 0.741 0.778 - - - peroxisomal biogenesis factor 19 [Source:ZFIN;Acc:ZDB-GENE-050417-424]
57. chrna1 ENSDARG00000009021 2931 1.514 0.721 - - - - - 0.793 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
58. WDR61 ENSDARG00000007755 2827 1.511 - - - - 0.729 0.782 - - - WD repeat domain 61 [Source:ZFIN;Acc:ZDB-GENE-040426-1851]
59. rpl17 ENSDARG00000057556 60281 1.51 0.768 - 0.742 - - - - - - ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
60. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 1.51 - - - - - 0.716 0.794 - - RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
61. C19H18orf21_1 C19H18orf21_1 1657 1.51 - - - - - 0.777 0.733 - -
62. h3f3b.1_1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 26947 1.502 - - - - - 0.730 0.772 - - H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
63. COL22A1 COL22A1 4473 1.502 - - - - - 0.738 0.764 - -
64. NDNF ENSDARG00000062936 7287 1.5 - - - - - 0.742 0.758 - - neuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
65. flncb ENSDARG00000018820 5595 1.497 - - - - - - 0.789 - 0.708 filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
66. PHLDB1 PHLDB1 3821 1.497 - - - - - 0.783 - - 0.714
67. ipo7 ENSDARG00000035751 7095 1.496 - - - - 0.795 - 0.701 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
68. hapln1a ENSDARG00000089769 12334 1.493 - - - - - - 0.768 - 0.725 hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
69. unc45b ENSDARG00000008433 8298 1.492 0.722 - - - - - 0.770 - - unc-45 myosin chaperone B [Source:ZFIN;Acc:ZDB-GENE-020919-3]
70. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.49 - - - - - 0.754 0.736 - - si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
71. vash2 ENSDARG00000007774 2537 1.489 - - - - - 0.782 0.707 - - vasohibin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-355]
72. eif3f ENSDARG00000077533 24387 1.488 - - - 0.701 - - 0.787 - - eukaryotic translation initiation factor 3, subunit F [Source:ZFIN;Acc:ZDB-GENE-100215-2]
73. kars ENSDARG00000103799 20937 1.488 0.703 - - - 0.785 - - - - lysyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-021115-8]
74. smek1 ENSDARG00000042187 3509 1.484 - - - - 0.726 - 0.758 - - SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
75. tnw 16679 1.484 - - - - 0.717 - 0.767 - - tenascin W, transcript variant X2
76. prkca ENSDARG00000039241, ENSDARG00000115657 2136 1.48 - - - - - 0.771 0.709 - - protein kinase C, alpha [Source:ZFIN;Acc:ZDB-GENE-050208-100]
77. cacna2d1a ENSDARG00000014804 1924 1.48 0.731 - - - - - 0.749 - - calcium channel, voltage-dependent, alpha 2/delta subunit 1a [Source:ZFIN;Acc:ZDB-GENE-041210-215]
78. znf106a ENSDARG00000016651 6049 1.477 0.703 - - - - - 0.774 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
79. cd248b ENSDARG00000077938 2561 1.476 - - - - 0.733 - 0.743 - - CD248 molecule, endosialin b [Source:ZFIN;Acc:ZDB-GENE-050309-46]
80. tmem47 ENSDARG00000057322 4691 1.471 - - - - 0.734 - 0.737 - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
81. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 1.465 - - - - 0.724 - 0.741 - - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
82. ap3d1 ENSDARG00000071424, ENSDARG00000114974 5373 1.459 - - - - - 0.752 - - 0.707 adaptor related protein complex 3 subunit delta 1 [Source:ZFIN;Acc:ZDB-GENE-050208-437]
83. echs1 ENSDARG00000001578 3733 1.453 - - - - 0.741 - 0.712 - - enoyl CoA hydratase, short chain, 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030616-617]
84. emc1 ENSDARG00000057255 3582 1.453 - - - - 0.700 - 0.753 - - ER membrane protein complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060810-98]
85. CYYR1 ENSDARG00000103783 4107 1.449 0.726 - - - - - 0.723 - - cysteine/tyrosine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2356]
86. psmb2 ENSDARG00000031511 4016 1.448 - - - - 0.723 - 0.725 - - proteasome subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-353]
87. snx1a ENSDARG00000071031 3975 1.446 - - - - 0.724 0.722 - - - sorting nexin 1a [Source:ZFIN;Acc:ZDB-GENE-060302-3]
88. HNRNPA2B1 HNRNPA2B1 14997 1.445 - - - - - 0.744 0.701 - -
89. xirp2a ENSDARG00000071113 7113 1.441 0.706 - - - - - 0.735 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
90. timm10 ENSDARG00000069116 4459 1.44 0.738 - - - - - 0.702 - - translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
91. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 1.439 0.703 - - - - - 0.736 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
92. GPRC5B GPRC5B 897 1.439 0.707 - - - - - 0.732 - -
93. gpia ENSDARG00000012987 4624 1.437 - - - - - - 0.710 - 0.727 glucose-6-phosphate isomerase a [Source:ZFIN;Acc:ZDB-GENE-020513-2]
94. rps7 ENSDARG00000042566 57650 1.426 0.719 - - - 0.707 - - - - ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
95. nop16 ENSDARG00000044402 3645 1.423 0.705 - - - - - 0.718 - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
96. vgll4b ENSDARG00000103730 5266 1.423 - - - - 0.706 - 0.717 - - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
97. uba52 ENSDARG00000041435 50415 0.96 - - - - - - 0.960 - - ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
98. zgc:193541 ENSDARG00000092873 21276 0.959 - - - - - - 0.959 - - zgc:193541 [Source:ZFIN;Acc:ZDB-GENE-081022-15]
99. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 0.955 - - - - - - 0.955 - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
100. rpl13a ENSDARG00000044093, ENSDARG00000116541 10473 0.948 - - - - - - 0.948 - - ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168]

There are 1161 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA