Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rpn1

Gene Name Gene ID Reads Annotation
rpn1 ENSDARG00000059323 10411 ribophorin I [Source:ZFIN;Acc:ZDB-GENE-030131-4286]










Genes with expression patterns similar to rpn1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpn1 ENSDARG00000059323 10411 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribophorin I [Source:ZFIN;Acc:ZDB-GENE-030131-4286]
2. rpl5a ENSDARG00000020197 35209 1.785 - - 0.800 - - - 0.985 - - ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
3. adh5 ENSDARG00000080010, ENSDARG00000111574 4980 1.717 - 0.820 0.897 - - - - - - alcohol dehydrogenase 5 [Source:ZFIN;Acc:ZDB-GENE-011003-1]
4. ube2g2 ENSDARG00000025404 1774 1.688 - 0.800 0.888 - - - - - - ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-288]
5. svopl ENSDARG00000057983, ENSDARG00000116460 975 1.687 - - 0.876 - - - - 0.811 - SVOP-like [Source:ZFIN;Acc:ZDB-GENE-041114-109]
6. zgc:56095 ENSDARG00000018461 3360 1.687 - 0.777 0.910 - - - - - - zgc:56095 [Source:ZFIN;Acc:ZDB-GENE-040426-1948]
7. CEP350 ENSDARG00000058000 2887 1.653 - 0.783 0.870 - - - - - - centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
8. stt3b ENSDARG00000001890 1836 1.649 - 0.763 - - - - - 0.886 - STT3B, subunit of the oligosaccharyltransferase complex (catalytic) [Source:ZFIN;Acc:ZDB-GENE-030131-2638]
9. XPR1 XPR1 3354 1.647 - 0.893 - - - - 0.754 - -
10. ARHGAP23 ARHGAP23 3946 1.638 - 0.756 0.882 - - - - - -
11. zfp36l2 ENSDARG00000021806, ENSDARG00000116819 2176 1.636 - 0.748 - - - - - 0.888 - zinc finger protein 36, C3H type-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5873]
12. st14a ENSDARG00000061173 3800 1.632 - - 0.879 - - - 0.753 - - suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
13. dlgap4a ENSDARG00000060849 1813 1.632 - 0.745 0.887 - - - - - - discs, large (Drosophila) homolog-associated protein 4a [Source:ZFIN;Acc:ZDB-GENE-080219-51]
14. sfxn3 ENSDARG00000057374, ENSDARG00000112320 1766 1.628 - 0.764 0.864 - - - - - - sideroflexin 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2092]
15. nol9 ENSDARG00000077751 2471 1.626 - 0.748 0.878 - - - - - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
16. sec22a ENSDARG00000078328 1207 1.622 - 0.761 0.861 - - - - - - SEC22 homolog A, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-030131-3553]
17. ywhae2 ENSDARG00000017014 5105 1.617 - 0.828 - - - 0.789 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-050306-44]
18. ptgs2a ENSDARG00000004539 1207 1.616 - 0.777 - - - - - 0.839 - prostaglandin-endoperoxide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020530-2]
19. ints8 ENSDARG00000057986 1063 1.608 - 0.722 0.886 - - - - - - integrator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-050522-556]
20. KIAA0355 3250 1.607 - 0.741 0.866 - - - - - - KIAA0355 ortholog, transcript variant X1
21. rqcd1 2301 1.599 - 0.710 0.889 - - - - - - RCD1 required for cell differentiation1 homolog (S. pombe)
22. soul2 ENSDARG00000039499 1469 1.599 - - - - - 0.736 - 0.863 - heme-binding protein soul2 [Source:ZFIN;Acc:ZDB-GENE-030131-2524]
23. pdlim1 ENSDARG00000019845 5765 1.598 - 0.780 0.818 - - - - - - PDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]
24. coro7 ENSDARG00000089616 2141 1.597 - 0.721 0.876 - - - - - - coronin 7 [Source:ZFIN;Acc:ZDB-GENE-050706-137]
25. znf292b ENSDARG00000043973 3791 1.596 - - 0.858 - - - - - 0.738 zinc finger protein 292b [Source:ZFIN;Acc:ZDB-GENE-030131-9559]
26. lpcat3 ENSDARG00000075178, ENSDARG00000109670 2713 1.592 - 0.806 - - - 0.786 - - - lysophosphatidylcholine acyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-041111-232]
27. sf3a3 ENSDARG00000100114 4511 1.588 - - 0.867 0.721 - - - - - splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
28. znf703 ENSDARG00000035563, ENSDARG00000112912 2226 1.586 - 0.726 0.860 - - - - - - zinc finger protein 703 [Source:ZFIN;Acc:ZDB-GENE-010717-1]
29. epas1a ENSDARG00000008697 3225 1.583 - - 0.831 - - - - 0.752 - endothelial PAS domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4490]
30. zgc:113054 ENSDARG00000053483 1079 1.583 - 0.735 0.848 - - - - - - zgc:113054 [Source:ZFIN;Acc:ZDB-GENE-050320-9]
31. tm9sf4 ENSDARG00000002536 1684 1.578 - - 0.875 - - - - - 0.703 transmembrane 9 superfamily protein member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1575]
32. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.578 - - - - - - - 0.760 0.818 nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
33. TCEB3 2429 1.564 - - - - - - - 0.830 0.734 transcription elongation factor B (SIII), polypeptide 3
34. thrap3b ENSDARG00000098228 4396 1.564 - 0.741 0.823 - - - - - - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
35. hectd1 ENSDARG00000054213 3501 1.55 - 0.783 - - - 0.767 - - - HECT domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030616-153]
36. fermt1 ENSDARG00000052652 2394 1.55 - 0.836 - - - 0.714 - - - fermitin family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3264]
37. loxl2b ENSDARG00000044074 1919 1.548 - 0.708 - - - - - 0.840 - lysyl oxidase-like 2b [Source:ZFIN;Acc:ZDB-GENE-050208-29]
38. fam43a ENSDARG00000043009 792 1.544 - 0.703 - - - - - 0.841 - family with sequence similarity 43, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6098]
39. cisd2 ENSDARG00000052703 2841 1.544 - - - - - - - 0.744 0.800 CDGSH iron sulfur domain 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1381]
40. eif3ea ENSDARG00000090697 14670 1.541 - - 0.833 0.708 - - - - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
41. pak4 ENSDARG00000018110 1962 1.539 - 0.746 0.793 - - - - - - p21 protein (Cdc42/Rac)-activated kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040704-69]
42. akap11 ENSDARG00000075435 654 1.536 - 0.762 - - - - - 0.774 - A kinase (PRKA) anchor protein 11 [Source:ZFIN;Acc:ZDB-GENE-090804-1]
43. elovl7a ENSDARG00000069279, ENSDARG00000114975 1963 1.527 - 0.739 - - - - - 0.788 - ELOVL fatty acid elongase 7a [Source:ZFIN;Acc:ZDB-GENE-030131-6149]
44. twf1a ENSDARG00000115712 3465 1.527 - 0.773 - - - - 0.754 - - twinfilin actin-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4402]
45. smu1 smu1 982 1.523 - 0.753 - - - - - 0.770 -
46. ddost ENSDARG00000037318 10904 1.52 0.796 - - - - 0.724 - - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-040426-2147]
47. FOXO4 ENSDARG00000055792 1457 1.519 - 0.788 - - - - - - 0.731 forkhead box O4 [Source:ZFIN;Acc:ZDB-GENE-150311-1]
48. emc10 ENSDARG00000054793 2315 1.519 - 0.763 - - - - - 0.756 - ER membrane protein complex subunit 10 [Source:ZFIN;Acc:ZDB-GENE-030131-9045]
49. praf2 ENSDARG00000032535 1400 1.509 - 0.776 - - - - - 0.733 - PRA1 domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-050417-190]
50. SEC24A ENSDARG00000104375 2614 1.507 - 0.718 0.789 - - - - - - SEC24 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-120926-1]
51. tmem238 tmem238 1403 1.506 - 0.774 - - - - - 0.732 -
52. map2k2a ENSDARG00000006609 856 1.503 - 0.746 - - - - - 0.757 - mitogen-activated protein kinase kinase 2a [Source:ZFIN;Acc:ZDB-GENE-041027-1]
53. arf5 ENSDARG00000070472, ENSDARG00000115687 12490 1.502 - 0.711 - - - 0.791 - - - ADP-ribosylation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030910-5]
54. sec11a ENSDARG00000008936, ENSDARG00000116303 6529 1.497 - - - - - 0.708 - - 0.789 SEC11 homolog A, signal peptidase complex subunit [Source:ZFIN;Acc:ZDB-GENE-040718-227]
55. hspa5 ENSDARG00000103846 4661 1.489 - 0.774 - - - - - - 0.715 heat shock protein 5 [Source:ZFIN;Acc:ZDB-GENE-031001-11]
56. ube2v2 ENSDARG00000028198 23341 1.485 - - 0.774 - - 0.711 - - - ubiquitin-conjugating enzyme E2 variant 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2919]
57. LIMD2 ENSDARG00000078092 3414 1.479 - 0.764 - - - - - 0.715 - LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120906-1]
58. si:dkey-87o1.2 ENSDARG00000095796 6602 1.474 0.703 - - - - 0.771 - - - si:dkey-87o1.2 [Source:ZFIN;Acc:ZDB-GENE-110411-217]
59. EPT1 EPT1 1912 1.473 - 0.717 - - - - - 0.756 -
60. si:ch211-166a6.5 ENSDARG00000079745 11111 1.471 - 0.724 - - - - 0.747 - - si:ch211-166a6.5 [Source:ZFIN;Acc:ZDB-GENE-030131-9913]
61. lamtor3 ENSDARG00000057075 2282 1.459 - 0.714 - - - - - - 0.745 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:ZFIN;Acc:ZDB-GENE-050522-345]
62. EIF1B ENSDARG00000029445 5034 1.45 - - - - - - - 0.737 0.713 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
63. fryl ENSDARG00000040001 3256 1.448 - 0.718 - - - 0.730 - - - furry homolog, like [Source:ZFIN;Acc:ZDB-GENE-040914-58]
64. ISCU ISCU 3648 1.445 - 0.707 - - - - - 0.738 -
65. si:dkey-27i16.3 si:dkey-27i16.3 494 1.444 - 0.714 - - - - - 0.730 -
66. sumo3b ENSDARG00000035993 3414 1.429 - 0.715 - - - - - - 0.714 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
67. EPS8L1 891 1.415 - 0.707 - - - - - - 0.708 eps8-like1, transcript variant X3
68. CABZ01111496.1 ENSDARG00000003041 15566 0.951 - - - - - - 0.951 - - E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
69. impdh1b ENSDARG00000029524 7472 0.948 - - - - - - 0.948 - - IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
70. aldh4a1 ENSDARG00000038207 4639 0.937 - - 0.937 - - - - - - aldehyde dehydrogenase 4 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1179]
71. si:ch1073-429i10.3 75111 0.916 - - - - - - 0.916 - - si:ch1073-429i10.3, transcript variant X2
72. elovl1a ENSDARG00000099960 1650 0.916 - - - - - - - 0.916 - ELOVL fatty acid elongase 1a [Source:ZFIN;Acc:ZDB-GENE-041010-66]
73. znf598 ENSDARG00000014945 1838 0.915 - - 0.915 - - - - - - zinc finger protein 598 [Source:ZFIN;Acc:ZDB-GENE-060602-3]
74. si:ch73-18b11.1 si:ch73-18b11.1 3840 0.91 - - 0.910 - - - - - -
75. cldn1 ENSDARG00000040045 5304 0.907 - 0.907 - - - - - - - claudin 1 [Source:ZFIN;Acc:ZDB-GENE-010328-11]
76. gltscr2 gltscr2 5763 0.903 - - 0.903 - - - - - -
77. znf207a ENSDARG00000015538 2630 0.901 - - 0.901 - - - - - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
78. ppapdc1b ppapdc1b 2866 0.901 - - 0.901 - - - - - -
79. tmed4 ENSDARG00000024954 3476 0.9 - - 0.900 - - - - - - transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
80. srsf5b ENSDARG00000027734 6996 0.899 - - 0.899 - - - - - - serine/arginine-rich splicing factor 5b [Source:ZFIN;Acc:ZDB-GENE-040718-354]
81. erlin1 ENSDARG00000021991 5664 0.899 - - 0.899 - - - - - - ER lipid raft associated 1 [Source:ZFIN;Acc:ZDB-GENE-050327-13]
82. bag6 ENSDARG00000075892 3782 0.898 - - 0.898 - - - - - - BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
83. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 61276 0.897 - - - - - - 0.897 - - ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
84. kmt2ca ENSDARG00000079312 2109 0.896 - - 0.896 - - - - - - lysine (K)-specific methyltransferase 2Ca [Source:ZFIN;Acc:ZDB-GENE-080520-3]
85. vta1 ENSDARG00000013732 6072 0.895 - - 0.895 - - - - - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
86. cox4i1 ENSDARG00000032970 53784 0.895 - - - - - - 0.895 - - cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
87. ppp4cb ENSDARG00000076439 1693 0.893 - - 0.893 - - - - - - protein phosphatase 4, catalytic subunit b [Source:ZFIN;Acc:ZDB-GENE-080219-32]
88. rnf183 ENSDARG00000068851 2427 0.893 - - 0.893 - - - - - - ring finger protein 183 [Source:ZFIN;Acc:ZDB-GENE-060929-1090]
89. MAF1 ENSDARG00000013122 6899 0.892 - - 0.892 - - - - - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
90. zgc:113442 ENSDARG00000101906 3092 0.892 - 0.892 - - - - - - - zgc:113442 [Source:ZFIN;Acc:ZDB-GENE-050227-2]
91. RNF38 ENSDARG00000062055 3901 0.891 - 0.891 - - - - - - - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
92. MRPL55 MRPL55 1711 0.891 - - 0.891 - - - - - -
93. WDFY3 ENSDARG00000078890 2092 0.89 - - 0.890 - - - - - - WD repeat and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070705-153]
94. tfdp1a ENSDARG00000019293, ENSDARG00000111589 1118 0.89 - - 0.890 - - - - - - transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
95. adam10a ENSDARG00000053468 9308 0.89 - 0.890 - - - - - - - ADAM metallopeptidase domain 10a [Source:ZFIN;Acc:ZDB-GENE-040917-2]
96. trpt1 ENSDARG00000037628 1081 0.89 - - 0.890 - - - - - - tRNA phosphotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-050227-16]
97. sh3rf1 ENSDARG00000070470 1463 0.89 - - 0.890 - - - - - - SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
98. manf ENSDARG00000063177, ENSDARG00000114083 570 0.889 - - - - - - - 0.889 - mesencephalic astrocyte-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-060929-640]
99. arfip2b ENSDARG00000056664, ENSDARG00000109805 964 0.889 - - 0.889 - - - - - - ADP-ribosylation factor interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-050417-131]
100. zmat2 ENSDARG00000004956 1676 0.889 - - 0.889 - - - - - - zinc finger, matrin-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3197]

There are 1117 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA