Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rpl39

Gene Name Gene ID Reads Annotation
rpl39 ENSDARG00000036316, ENSDARG00000117167 80631 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]










Genes with expression patterns similar to rpl39

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpl39 ENSDARG00000036316, ENSDARG00000117167 80631 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
2. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 25449 2.479 0.719 0.789 - - - - 0.971 - - proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
3. vbp1 ENSDARG00000030241 10619 1.787 0.827 - - - - - 0.960 - - von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
4. rpl35 ENSDARG00000018334 69583 1.769 0.793 - - - - - 0.976 - - ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
5. mcm7 ENSDARG00000101180 12417 1.768 - - - - - 0.774 - - 0.994 minichromosome maintenance complex component 7 [Source:ZFIN;Acc:ZDB-GENE-020419-27]
6. rtn4a ENSDARG00000044601, ENSDARG00000112237 24526 1.747 0.781 - - - - - 0.966 - - reticulon 4a [Source:ZFIN;Acc:ZDB-GENE-030710-1]
7. rplp2 ENSDARG00000101406 77670 1.734 0.743 - - - - - - - 0.991 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
8. mybpc3 ENSDARG00000011615 7271 1.731 - - - - - 0.756 0.975 - - myosin binding protein C, cardiac [Source:ZFIN;Acc:ZDB-GENE-070112-2362]
9. rps23 ENSDARG00000021838 145026 1.721 0.806 - - - - - 0.915 - - ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
10. rps13 ENSDARG00000036298, ENSDARG00000112818 58520 1.701 0.718 - - - - - 0.983 - - ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
11. mt-nd3 ENSDARG00000063914 62872 1.668 0.743 - - - - - 0.925 - - NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
12. rpl10a ENSDARG00000042905, ENSDARG00000115649 202994 1.663 0.848 - - - - - 0.815 - - ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
13. col11a1a ENSDARG00000026165, ENSDARG00000115341 43138 1.64 - - 0.727 - - - 0.913 - - collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
14. RPL29 ENSDARG00000077717 88791 1.637 0.891 - - 0.746 - - - - - ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
15. hint1 ENSDARG00000103824, ENSDARG00000110789 8302 1.573 0.825 0.748 - - - - - - - histidine triad nucleotide binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040927-8]
16. nhp2 ENSDARG00000069422 9925 1.537 0.820 - 0.717 - - - - - - NHP2 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-533]
17. rps27a ENSDARG00000032725, ENSDARG00000114059 132883 1.531 - - 0.718 0.813 - - - - - ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
18. kif13ba ENSDARG00000079731 1726 1.521 - 0.747 - - - 0.774 - - - kinesin family member 13Ba [Source:ZFIN;Acc:ZDB-GENE-070521-1]
19. pa2g4a ENSDARG00000039578, ENSDARG00000115881 16166 1.517 0.790 - - - - 0.727 - - - proliferation-associated 2G4, a [Source:ZFIN;Acc:ZDB-GENE-030616-161]
20. pank1b ENSDARG00000010098 3202 1.516 - 0.742 - - - 0.774 - - - pantothenate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070209-259]
21. murcb murcb 13655 1.513 0.719 0.794 - - - - - - -
22. slc1a5 ENSDARG00000099186 7580 1.512 - 0.741 - - - 0.771 - - - solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
23. eif4ebp2 ENSDARG00000031819 13168 1.494 - 0.719 0.775 - - - - - - eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
24. si:ch211-151o1.2 si:ch211-151o1.2 3580 1.489 0.718 0.771 - - - - - - -
25. pi4kaa ENSDARG00000076724 1949 1.485 - 0.727 - - - 0.758 - - - phosphatidylinositol 4-kinase, catalytic, alpha a [Source:ZFIN;Acc:ZDB-GENE-100204-2]
26. mrpl36 ENSDARG00000070607 4069 1.485 0.740 0.745 - - - - - - - mitochondrial ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-060503-821]
27. psma3 ENSDARG00000086618 6200 1.481 0.724 - - - - 0.757 - - - proteasome subunit alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050913-120]
28. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 1.477 0.760 0.717 - - - - - - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
29. si:ch211-156j16.1 ENSDARG00000092035 7441 1.476 0.733 0.743 - - - - - - - si:ch211-156j16.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4106]
30. ndufs1 ENSDARG00000028546 5795 1.473 0.704 0.769 - - - - - - - NADH:ubiquinone oxidoreductase core subunit S1 [Source:ZFIN;Acc:ZDB-GENE-030131-478]
31. psma6b ENSDARG00000013966 4410 1.468 0.716 0.752 - - - - - - - proteasome subunit alpha 6b [Source:ZFIN;Acc:ZDB-GENE-040718-329]
32. vcl vcl 6667 1.465 0.721 - - - - 0.744 - - -
33. psmd14 ENSDARG00000063100 15711 1.461 0.729 0.732 - - - - - - - proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
34. eprs ENSDARG00000060494 4729 1.46 0.711 - - - - 0.749 - - - glutamyl-prolyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-638]
35. spag7 ENSDARG00000011555 3224 1.459 0.719 0.740 - - - - - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
36. PSIP1 PSIP1 5252 1.459 0.712 0.747 - - - - - - -
37. atf4b2 atf4b2 4734 1.449 - 0.706 - - - 0.743 - - -
38. slc6a9 ENSDARG00000018534 4089 1.437 0.717 - - - - 0.720 - - - solute carrier family 6 (neurotransmitter transporter, glycine), member 9 [Source:ZFIN;Acc:ZDB-GENE-050105-3]
39. flncb ENSDARG00000018820 5595 1.434 0.732 - 0.702 - - - - - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
40. col1a2 ENSDARG00000020007 36228 1.43 0.705 0.725 - - - - - - - collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
41. atpif1a 6030 1.415 0.701 0.714 - - - - - - - ATPase inhibitory factor 1a
42. dnajc18 ENSDARG00000056005 8084 0.994 - - - - - - - - 0.994 DnaJ (Hsp40) homolog, subfamily C, member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-8019]
43. MRPL47 ENSDARG00000075743, ENSDARG00000114962 10236 0.994 - - - - - - - - 0.994 mitochondrial ribosomal protein L47 [Source:ZFIN;Acc:ZDB-GENE-030219-177]
44. CABZ01055343.2 CABZ01055343.2 10312 0.994 - - - - - - - - 0.994
45. zbtb10 ENSDARG00000077101 8683 0.994 - - - - - - - - 0.994 zinc finger and BTB domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030429-10]
46. letm2 ENSDARG00000077515 9561 0.994 - - - - - - - - 0.994 leucine zipper-EF-hand containing transmembrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-090521-4]
47. rps18 ENSDARG00000100392 64615 0.994 - - - - - - - - 0.994 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
48. ppp4ca ENSDARG00000070570 8395 0.994 - - - - - - - - 0.994 protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
49. tubb5 ENSDARG00000037997 18691 0.993 - - - - - - - - 0.993 tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
50. cd164 ENSDARG00000013628 21750 0.993 - - - - - - - - 0.993 CD164 molecule, sialomucin [Source:ZFIN;Acc:ZDB-GENE-030131-1598]
51. top1l ENSDARG00000070545 40529 0.992 - - - - - - - - 0.992 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
52. xbp1 ENSDARG00000035622 18416 0.981 - - - - - - - - 0.981 X-box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-011210-2]
53. hnrnpab hnrnpab 72354 0.973 - - - - - - - - 0.973
54. tnni1al 8272 0.971 - - - - - - 0.971 - - troponin I, skeletal, slow like, transcript variant X1
55. rpl4 ENSDARG00000041182 18655 0.971 - - - - - - 0.971 - - ribosomal protein L4 [Source:ZFIN;Acc:ZDB-GENE-030131-9034]
56. glulb ENSDARG00000100003, ENSDARG00000113742 19292 0.97 - - - - - - 0.970 - - glutamate-ammonia ligase (glutamine synthase) b [Source:ZFIN;Acc:ZDB-GENE-030131-8417]
57. syncrip ENSDARG00000040184 24690 0.97 - - - - - - 0.970 - - synaptotagmin binding, cytoplasmic RNA interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4862]
58. cirbp cirbp 88363 0.97 - - - - - - 0.970 - -
59. pvalb3 ENSDARG00000022817, ENSDARG00000117131 4180 0.968 - - - - - - 0.968 - - parvalbumin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-945]
60. hspe1 ENSDARG00000056167 21636 0.964 - - - - - - 0.964 - - heat shock 10 protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-2]
61. atp2a1l ENSDARG00000035458 6222 0.961 - - - - - - 0.961 - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like [Source:ZFIN;Acc:ZDB-GENE-041229-2]
62. klf11a ENSDARG00000030844 3972 0.959 - - - - - - 0.959 - - Kruppel-like factor 11a [Source:ZFIN;Acc:ZDB-GENE-030131-3568]
63. sdprb sdprb 13647 0.959 - - - - - - 0.959 - -
64. srsf1a ENSDARG00000057691, ENSDARG00000111226 15525 0.959 - - - - - - 0.959 - - serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
65. selt2 12741 0.959 - - - - - - 0.959 - - selenoprotein T, 2
66. kpnb1 ENSDARG00000104889 9282 0.958 - - - - - - 0.958 - - karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
67. smyd2b ENSDARG00000005629 8181 0.957 - - - - - - 0.957 - - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
68. psmb1 ENSDARG00000009640 8628 0.956 - - - - - - 0.956 - - proteasome subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-040618-2]
69. snx9b ENSDARG00000069302, ENSDARG00000116107 5673 0.955 - - - - - - 0.955 - - sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]
70. si:dkeyp-13a3.7 si:dkeyp-13a3.7 3422 0.955 - - - - - - 0.955 - -
71. fam133b ENSDARG00000013863 5070 0.955 - - - - - - 0.955 - - family with sequence similarity 133, member B [Source:ZFIN;Acc:ZDB-GENE-060503-229]
72. rpsa ENSDARG00000019181 93440 0.955 - - - - - - 0.955 - - ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
73. rhoad rhoad 8007 0.955 - - - - - - 0.955 - -
74. si:ch211-71n6.4 ENSDARG00000102234 2499 0.953 - - - - - - 0.953 - - si:ch211-71n6.4 [Source:ZFIN;Acc:ZDB-GENE-091204-213]
75. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 0.953 - - - - - - 0.953 - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
76. clasp2 ENSDARG00000020345 3382 0.953 - - - - - - 0.953 - - cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
77. prmt5 ENSDARG00000079605, ENSDARG00000116785 4676 0.953 - - - - - - 0.953 - - protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
78. CR548630.1 CR548630.1 3301 0.953 - - - - - - 0.953 - -
79. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 0.953 - - - - - - 0.953 - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
80. foxp1a ENSDARG00000004843 3961 0.952 - - - - - - 0.952 - - forkhead box P1a [Source:ZFIN;Acc:ZDB-GENE-060929-624]
81. map7d3 ENSDARG00000060771 1739 0.952 - - - - - - 0.952 - - MAP7 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-121129-3]
82. SEMA5B SEMA5B 1316 0.952 - - - - - - 0.952 - -
83. SGPP1 ENSDARG00000060534 1802 0.952 - - - - - - 0.952 - - sphingosine-1-phosphate phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-090319-2]
84. sfrp5 ENSDARG00000039041 1777 0.952 - - - - - - 0.952 - - secreted frizzled-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-011108-2]
85. aaas ENSDARG00000102274 1192 0.952 - - - - - - 0.952 - - achalasia, adrenocortical insufficiency, alacrimia [Source:ZFIN;Acc:ZDB-GENE-030912-4]
86. CAPN2 CAPN2 1497 0.951 - - - - - - 0.951 - -
87. apg3l apg3l 5153 0.95 - - - - - - 0.950 - -
88. f11r f11r 16668 0.939 - - - - - - 0.939 - -
89. tegt ENSDARG00000077934 27182 0.939 - - - - - - 0.939 - - testis enhanced gene transcript (BAX inhibitor 1) [Source:ZFIN;Acc:ZDB-GENE-030826-10]
90. rps25 ENSDARG00000041811 52182 0.936 0.936 - - - - - - - - ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
91. tnni2b.1 ENSDARG00000035958 51597 0.923 - - - - - - 0.923 - - troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
92. rpl36a ENSDARG00000058105, ENSDARG00000112656 136684 0.916 0.916 - - - - - - - - ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
93. flna ENSDARG00000074201 26242 0.912 - - - - - - 0.912 - - filamin A, alpha (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-030131-2145]
94. rps29 ENSDARG00000041232 71334 0.909 0.909 - - - - - - - - ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
95. RPL37A RPL37A 62256 0.907 0.907 - - - - - - - -
96. apoa1a ENSDARG00000012076, ENSDARG00000110395 163437 0.9 - - - - - - - - 0.900 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
97. rps27.1 ENSDARG00000023298 86382 0.896 0.896 - - - - - - - - ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. rpl6 ENSDARG00000058451 82152 0.891 0.891 - - - - - - - - ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
99. RPS17L RPS17L 51105 0.881 0.881 - - - - - - - -
100. cotl1 ENSDARG00000026829 23295 0.876 - - - - - - 0.876 - - coactosin-like F-actin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8325]

There are 569 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA