Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rpf1

Gene Name Gene ID Reads Annotation
rpf1 ENSDARG00000005738, ENSDARG00000112347, ENSDARG00000115372 3522 ribosome production factor 1 homolog [Source:ZFIN;Acc:ZDB-GENE-040625-177]










Genes with expression patterns similar to rpf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpf1 ENSDARG00000005738, ENSDARG00000112347, ENSDARG00000115372 3522 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosome production factor 1 homolog [Source:ZFIN;Acc:ZDB-GENE-040625-177]
2. nop16 ENSDARG00000044402 3645 2.467 - 0.981 - 0.724 - - 0.762 - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
3. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.353 0.767 - - - - - - 0.800 0.786 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
4. abcf1 ENSDARG00000031795 8635 2.336 - 0.911 - 0.701 - - - - 0.724 ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
5. eps15l1a ENSDARG00000042670 1565 1.86 - 0.983 - - - - - - 0.877 epidermal growth factor receptor pathway substrate 15-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-274]
6. nr2f6a ENSDARG00000003607 4779 1.841 - 0.976 - - - - - - 0.865 nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
7. prmt6 ENSDARG00000069706 484 1.807 - 0.971 - - - - - - 0.836 protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
8. CABZ01057907.1 CABZ01057907.1 1140 1.782 - 0.977 - - - - - - 0.805
9. si:ch211-133l11.10 ENSDARG00000005626 381 1.782 - 0.971 - - - - - - 0.811 si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
10. rhoj ENSDARG00000020250 1522 1.77 - 0.980 - - - - - - 0.790 ras homolog family member J [Source:ZFIN;Acc:ZDB-GENE-040724-272]
11. CTIF ENSDARG00000090617 270 1.762 - 0.971 - - - - - - 0.791 CBP80/20-dependent translation initiation factor [Source:ZFIN;Acc:ZDB-GENE-130530-1003]
12. bag6 ENSDARG00000075892 3782 1.748 - 0.981 - - - - - - 0.767 BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
13. CASK CASK 1750 1.746 - 0.976 - - - - - - 0.770
14. zc3h15 ENSDARG00000015889 3861 1.742 - 0.977 - - - - - 0.765 - zinc finger CCCH-type containing 15 [Source:ZFIN;Acc:ZDB-GENE-030131-6239]
15. slc1a4 ENSDARG00000000551 4298 1.734 0.748 0.986 - - - - - - - solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-030616-566]
16. syap1 ENSDARG00000012946 3560 1.726 - 0.921 - - - 0.805 - - - synapse associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-917]
17. akirin2 ENSDARG00000058729 13245 1.707 - 0.978 - - - 0.729 - - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
18. ubr4 ENSDARG00000009549 5565 1.707 - 0.956 - - - - - - 0.751 ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
19. nt5c2b ENSDARG00000058231 3822 1.706 - 0.897 - - - - - - 0.809 5'-nucleotidase, cytosolic IIb [Source:ZFIN;Acc:ZDB-GENE-061013-522]
20. ptcd3 ENSDARG00000103856 2107 1.702 0.728 0.974 - - - - - - - pentatricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6849]
21. gars ENSDARG00000059070 17015 1.677 - 0.925 - - - 0.752 - - - glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
22. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.675 - 0.966 - - - 0.709 - - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
23. supt16h ENSDARG00000079949 4755 1.66 0.770 - - - - - - - 0.890 SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
24. ints8 ENSDARG00000057986 1063 1.659 - - - - - - 0.806 - 0.853 integrator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-050522-556]
25. cdca7a ENSDARG00000077620 9345 1.659 - 0.923 - - - 0.736 - - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
26. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 1.658 - 0.948 - - - - 0.710 - - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
27. melk ENSDARG00000030759 1150 1.644 - - - - - - 0.810 - 0.834 maternal embryonic leucine zipper kinase [Source:ZFIN;Acc:ZDB-GENE-990603-5]
28. sumo3b ENSDARG00000035993 3414 1.625 - - - - - - 0.756 - 0.869 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
29. wu:fj29h11 ENSDARG00000096562 863 1.62 - - - - - - 0.769 - 0.851 wu:fj29h11 [Source:ZFIN;Acc:ZDB-GENE-030131-7558]
30. memo1 ENSDARG00000010823 1681 1.598 - - - - - - - 0.723 0.875 mediator of cell motility 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5571]
31. bre bre 1233 1.595 - - - - - - 0.791 - 0.804
32. kifc1 ENSDARG00000001558 6658 1.584 - 0.716 - - - - - - 0.868 kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
33. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 1.584 0.749 - - - - - - - 0.835 RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
34. snrpd3 ENSDARG00000013800, ENSDARG00000112203 3334 1.575 - - - - - - - 0.765 0.810 small nuclear ribonucleoprotein D3 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040625-55]
35. psmc3 ENSDARG00000007141 5592 1.568 - - - - - 0.709 - - 0.859 proteasome 26S subunit, ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-666]
36. rbbp6 ENSDARG00000037919 4813 1.566 0.805 - - - - - - - 0.761 retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5]
37. fam122b ENSDARG00000036500, ENSDARG00000116582 1408 1.566 - - - - - - 0.719 - 0.847 family with sequence similarity 122B [Source:ZFIN;Acc:ZDB-GENE-040801-204]
38. ldb1a ENSDARG00000010137 3035 1.561 - - - - - - 0.751 0.810 - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
39. ngly1 ENSDARG00000003205 733 1.56 - - - - - - 0.737 - 0.823 N-glycanase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-535]
40. mrps2 ENSDARG00000103198 2410 1.56 - - - - - 0.733 - - 0.827 mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
41. araf ENSDARG00000054533 1132 1.559 - - - - - 0.760 - - 0.799 A-Raf proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050102-2]
42. nsun2 ENSDARG00000056665 740 1.558 - - - - - - 0.746 - 0.812 NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
43. pabpc4 ENSDARG00000059259, ENSDARG00000111312 2392 1.554 0.720 0.834 - - - - - - - poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
44. mcts1 ENSDARG00000025972 4662 1.549 0.710 - - - - - - - 0.839 malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
45. pou4f2 ENSDARG00000069737 451 1.549 - - - - - - - 0.722 0.827 POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
46. hic1l ENSDARG00000045660 1489 1.543 - - - - - 0.714 - - 0.829 hypermethylated in cancer 1 like [Source:ZFIN;Acc:ZDB-GENE-030620-1]
47. u2af2b ENSDARG00000011740 6946 1.535 - - - - - 0.721 - - 0.814 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
48. dido1 ENSDARG00000057940 3819 1.533 - - - - - 0.728 - - 0.805 death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
49. si:dkey-156k2.6 si:dkey-156k2.6 848 1.53 - - - - - - 0.724 - 0.806
50. gmps ENSDARG00000079848 8217 1.529 - 0.817 0.712 - - - - - - guanine monophosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1503]
51. rnf121 ENSDARG00000060282 1809 1.527 - - - - - 0.705 - - 0.822 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
52. RNPEPL1 ENSDARG00000007813 557 1.523 - - - - - - 0.746 - 0.777 arginyl aminopeptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5522]
53. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.521 - - - - - 0.710 - - 0.811 nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
54. crsp7 ENSDARG00000105102 1169 1.52 - - - - - 0.747 - 0.773 - cofactor required for Sp1 transcriptional activation, subunit 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2005]
55. rerea ENSDARG00000077353 4162 1.52 - - - - - - - 0.718 0.802 arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
56. znf207a ENSDARG00000015538 2630 1.52 - - - - - - 0.718 - 0.802 zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
57. CABZ01111990.1 CABZ01111990.1 4374 1.517 - - - - - - - 0.764 0.753
58. si:ch211-51e12.7 ENSDARG00000045914 9598 1.517 - 0.741 - - - 0.776 - - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
59. plcg1 ENSDARG00000038442 5324 1.516 - - - - - 0.733 - - 0.783 phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
60. rbm42 ENSDARG00000039910 1111 1.514 - - - - - - 0.713 - 0.801 RNA binding motif protein 42 [Source:ZFIN;Acc:ZDB-GENE-040809-2]
61. chd9 ENSDARG00000074498, ENSDARG00000112964 2603 1.514 - - - - - - - 0.711 0.803 chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
62. rwdd ENSDARG00000068256 964 1.514 - - - - - - 0.712 - 0.802 RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
63. bnip3la ENSDARG00000025468 3097 1.508 0.714 - - - - - - - 0.794 BCL2 interacting protein 3 like a [Source:ZFIN;Acc:ZDB-GENE-030131-2283]
64. arglu1a ENSDARG00000019223 8716 1.507 - - - - - 0.734 0.773 - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
65. brd2a ENSDARG00000022280 3481 1.5 - - - - - 0.712 - - 0.788 bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
66. flot2a ENSDARG00000004830 5276 1.5 0.780 - - - - 0.720 - - - flotillin 2a [Source:ZFIN;Acc:ZDB-GENE-020430-3]
67. fscn1a ENSDARG00000059680 3999 1.49 - - - - - - - 0.705 0.785 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
68. hmga2 ENSDARG00000069912 20402 1.488 - - - - - 0.774 0.714 - - high mobility group AT-hook 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3148]
69. atp6v1e1b ENSDARG00000030694 5452 1.487 - 0.733 - - - 0.754 - - - ATPase H+ transporting V1 subunit E1b [Source:ZFIN;Acc:ZDB-GENE-020419-11]
70. slc25a11 ENSDARG00000035741 3377 1.486 - - - - - 0.774 0.712 - - solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 [Source:ZFIN;Acc:ZDB-GENE-040625-79]
71. ptbp1b ENSDARG00000031907, ENSDARG00000115714 3808 1.472 - - - - - - 0.742 - 0.730 polypyrimidine tract binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9796]
72. elf2b ENSDARG00000079626, ENSDARG00000117064 3057 1.47 0.750 - - - - 0.720 - - - E74-like factor 2b (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-031215-1]
73. eif3g ENSDARG00000016889 10367 1.463 - - - - - 0.751 0.712 - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
74. wdr3 ENSDARG00000011079 1403 1.461 - - - - - - 0.705 0.756 - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
75. TPP2 ENSDARG00000078751 2755 1.457 - - - - - 0.756 0.701 - - tripeptidyl peptidase 2 [Source:ZFIN;Acc:ZDB-GENE-121214-290]
76. eif6 ENSDARG00000020232 2744 1.455 0.724 0.731 - - - - - - - eukaryotic translation initiation factor 6 [Source:ZFIN;Acc:ZDB-GENE-031118-110]
77. zgc:162967 zgc:162967 2132 1.435 - - - - - - 0.732 0.703 -
78. mllt4 mllt4 2939 1.415 - - - - - - 0.712 - 0.703
79. LENG8 ENSDARG00000076805, ENSDARG00000113326 4021 1.412 0.709 - - - - - 0.703 - - leukocyte receptor cluster (LRC) member 8 [Source:ZFIN;Acc:ZDB-GENE-070410-6]
80. snoU83B snoU83B 4666 0.99 - 0.990 - - - - - - -
81. ndufv3 ENSDARG00000090389 4829 0.989 - 0.989 - - - - - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:ZFIN;Acc:ZDB-GENE-030131-6500]
82. pdia5 ENSDARG00000069242 3576 0.988 - 0.988 - - - - - - - protein disulfide isomerase family A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030521-5]
83. trim63 trim63 2437 0.987 - 0.987 - - - - - - -
84. cul4b ENSDARG00000060510 6053 0.987 - 0.987 - - - - - - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
85. slc6a8 ENSDARG00000043646 1114 0.986 - 0.986 - - - - - - - solute carrier family 6 (neurotransmitter transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-071024-2]
86. hccs hccs 1758 0.986 - 0.986 - - - - - - -
87. glsb ENSDARG00000040705 1439 0.985 - 0.985 - - - - - - - glutaminase b [Source:ZFIN;Acc:ZDB-GENE-030616-550]
88. C9H2orf15 C9H2orf15 1975 0.985 - 0.985 - - - - - - -
89. cdv3 ENSDARG00000023028 12380 0.985 - 0.985 - - - - - - - carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
90. rock1 ENSDARG00000058993 2603 0.985 - 0.985 - - - - - - - Rho-associated, coiled-coil containing protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-100712-2]
91. helz ENSDARG00000030560 3259 0.985 - 0.985 - - - - - - - helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
92. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 0.985 - 0.985 - - - - - - - proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
93. otub1a ENSDARG00000055536 2892 0.984 - 0.984 - - - - - - - OTU deubiquitinase, ubiquitin aldehyde binding 1a [Source:ZFIN;Acc:ZDB-GENE-040718-108]
94. ssr3 ENSDARG00000014165, ENSDARG00000111483 1881 0.984 - 0.984 - - - - - - - signal sequence receptor, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-9134]
95. arih1 ENSDARG00000003616, ENSDARG00000109413 1739 0.984 - 0.984 - - - - - - - ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5213]
96. bves ENSDARG00000058548 2291 0.984 - 0.984 - - - - - - - blood vessel epicardial substance [Source:ZFIN;Acc:ZDB-GENE-040624-11]
97. ttc3 ENSDARG00000086075 2157 0.983 - 0.983 - - - - - - - tetratricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-090313-3]
98. MAP4K4 ENSDARG00000098670 4665 0.983 - 0.983 - - - - - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
99. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 0.983 - 0.983 - - - - - - - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
100. GATAD2B ENSDARG00000005834 3855 0.983 - 0.983 - - - - - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]

There are 1151 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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