Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rpe

Gene Name Gene ID Reads Annotation
rpe ENSDARG00000005251, ENSDARG00000117024 3865 ribulose-5-phosphate-3-epimerase [Source:ZFIN;Acc:ZDB-GENE-030131-6837]










Genes with expression patterns similar to rpe

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpe ENSDARG00000005251, ENSDARG00000117024 3865 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribulose-5-phosphate-3-epimerase [Source:ZFIN;Acc:ZDB-GENE-030131-6837]
2. tfa ENSDARG00000016771 30517 5.511 0.787 - 0.784 0.719 - 0.842 0.893 0.727 0.759 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
3. slc43a2b ENSDARG00000061120, ENSDARG00000117188 33657 5.481 0.801 - 0.770 0.726 0.768 0.873 - 0.772 0.771 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
4. fgg ENSDARG00000037281, ENSDARG00000114705 10817 5.356 0.767 0.718 0.857 0.750 0.761 - - 0.743 0.760 fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]
5. pvalb9 ENSDARG00000071601, ENSDARG00000113946 30137 5.278 0.708 0.793 0.777 0.746 0.799 - - 0.727 0.728 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
6. cry3_1 cry3_1 3347 5.251 0.730 - - 0.714 0.742 0.904 0.701 0.741 0.719
7. serpina1 ENSDARG00000090286 8108 4.718 0.891 - 0.734 - 0.716 0.870 - 0.752 0.755 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1421]
8. zgc:161979 zgc:161979 196746 4.716 0.795 - - - 0.775 0.748 0.905 0.721 0.772
9. rpia ENSDARG00000056640, ENSDARG00000110576 8288 4.687 - - 0.739 - 0.787 0.788 0.948 0.704 0.721 ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) [Source:ZFIN;Acc:ZDB-GENE-041114-24]
10. apoc2 ENSDARG00000092155 38149 4.664 0.794 - 0.794 - 0.791 0.814 0.751 0.720 - apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
11. apoa2 ENSDARG00000015866 297380 4.66 0.762 - 0.806 - 0.771 0.830 0.745 0.746 - apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
12. apobb apobb 258472 4.642 0.810 - 0.743 - 0.772 0.764 0.796 0.757 -
13. apoa4 apoa4 84813 4.631 - - 0.812 - 0.743 0.767 0.839 0.703 0.767
14. kng1 ENSDARG00000022372, ENSDARG00000112486 2503 4.519 0.784 - 0.795 - 0.703 0.745 0.784 0.708 - kininogen 1 [Source:ZFIN;Acc:ZDB-GENE-041010-56]
15. cst3 ENSDARG00000007795 13753 4.202 0.883 - - 0.714 - 0.914 0.960 0.731 - cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
16. tcn2l tcn2l 2428 4.143 0.753 - - - - 0.901 0.941 0.783 0.765
17. serpina1l ENSDARG00000090850 10625 4.13 - - 0.792 0.730 - 0.912 0.923 - 0.773 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1, like [Source:ZFIN;Acc:ZDB-GENE-040721-3]
18. mthfd1b ENSDARG00000040492 3784 4.103 0.704 - 0.879 - 0.817 0.790 0.913 - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b [Source:ZFIN;Acc:ZDB-GENE-020905-4]
19. spns1 ENSDARG00000011925, ENSDARG00000111727 3126 4.096 - - 0.758 - - 0.908 0.953 0.709 0.768 spinster homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020228-1]
20. sb:cb37 ENSDARG00000041645 2018 4.095 - 0.913 0.713 - 0.710 0.848 0.911 - - sb:cb37 [Source:ZFIN;Acc:ZDB-GENE-030131-9800]
21. suclg2 ENSDARG00000044914 7950 4.076 0.733 - - - 0.790 0.878 0.903 0.772 - succinate-CoA ligase, GDP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-030114-3]
22. dao.1 ENSDARG00000035602 11969 4.073 0.904 - 0.772 - - - 0.890 0.750 0.757 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
23. CD68 CD68 4599 4.05 - - - - 0.755 0.865 0.845 0.826 0.759
24. gart ENSDARG00000101089 6062 4.043 0.824 0.921 - 0.730 - 0.854 - 0.714 - phosphoribosylglycinamide formyltransferase [Source:ZFIN;Acc:ZDB-GENE-000616-14]
25. pcbd1 ENSDARG00000031981 3373 4.034 0.731 - 0.751 - 0.772 0.833 0.947 - - pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:ZFIN;Acc:ZDB-GENE-040426-1787]
26. ctsla ENSDARG00000007836 67814 4.033 0.706 - - - - 0.867 0.950 0.751 0.759 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
27. fabp2 ENSDARG00000006427, ENSDARG00000110230 56349 4.01 0.853 - 0.713 - 0.790 - 0.925 - 0.729 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
28. txn ENSDARG00000044125, ENSDARG00000116040 4758 3.989 0.785 - - 0.701 0.755 0.834 0.914 - - thioredoxin [Source:ZFIN;Acc:ZDB-GENE-040718-162]
29. zgc:161979_1 zgc:161979_1 206500 3.953 0.836 - 0.702 - 0.726 0.799 0.890 - -
30. gpd1b ENSDARG00000043180 6002 3.923 0.705 - 0.800 - 0.767 0.794 0.857 - - glycerol-3-phosphate dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3906]
31. aqp12 ENSDARG00000043279 1881 3.879 0.779 - 0.701 - - 0.715 0.940 0.744 - aquaporin 12 [Source:ZFIN;Acc:ZDB-GENE-040718-310]
32. apoeb ENSDARG00000040295 229165 3.839 0.758 - - - 0.712 0.842 0.825 - 0.702 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
33. dmgdh ENSDARG00000025703 6088 3.826 0.839 - 0.790 - 0.735 - - 0.709 0.753 dimethylglycine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-080227-8]
34. rgs4 ENSDARG00000070047, ENSDARG00000116319 2461 3.801 - - - - 0.734 0.825 0.714 0.768 0.760 regulator of G protein signaling 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9839]
35. apoa1b ENSDARG00000101324 336817 3.778 - - - - 0.796 0.776 0.732 0.723 0.751 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. hao1 ENSDARG00000024160 6104 3.748 - - 0.804 0.735 0.797 - - 0.703 0.709 hydroxyacid oxidase (glycolate oxidase) 1 [Source:ZFIN;Acc:ZDB-GENE-060519-2]
37. APOA4_1 APOA4_1 3645 3.563 0.839 0.978 - - - 0.862 0.884 - -
38. fbp1b ENSDARG00000020364, ENSDARG00000111266 10050 3.384 - - - - 0.794 0.891 0.972 0.727 - fructose-1,6-bisphosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-021206-11]
39. mthfd1l ENSDARG00000042221, ENSDARG00000110473 19571 3.354 - 0.926 - - - 0.939 - 0.738 0.751 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
40. atic ENSDARG00000016706 6032 3.317 0.801 - - 0.736 - - 0.982 0.798 - 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:ZFIN;Acc:ZDB-GENE-011212-4]
41. apom ENSDARG00000076838 4732 3.307 0.830 - 0.706 - - 0.861 0.910 - - apolipoprotein M [Source:ZFIN;Acc:ZDB-GENE-010605-5]
42. glula ENSDARG00000099776 14156 3.307 0.877 - - - 0.759 - 0.934 - 0.737 glutamate-ammonia ligase (glutamine synthase) a [Source:ZFIN;Acc:ZDB-GENE-030131-688]
43. dgat2 ENSDARG00000018846 5032 3.291 - - 0.798 - - 0.858 0.929 - 0.706 diacylglycerol O-acyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-15]
44. MPC2 ENSDARG00000024478 4194 3.27 0.753 - - - - 0.828 0.941 - 0.748 mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
45. zgc:136410 ENSDARG00000102241 8433 3.267 - - - - 0.736 0.915 0.910 - 0.706 zgc:136410 [Source:ZFIN;Acc:ZDB-GENE-060421-6071]
46. atp6v1ba ENSDARG00000013443, ENSDARG00000111525 6645 3.261 0.761 0.929 - - 0.765 - 0.806 - - ATPase, H+ transporting, lysosomal, V1 subunit B, member a [Source:ZFIN;Acc:ZDB-GENE-030711-3]
47. serpinf2b ENSDARG00000061383 3859 3.244 0.847 - - - 0.702 - 0.974 - 0.721 serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2b [Source:ZFIN;Acc:ZDB-GENE-061215-114]
48. fahd2a ENSDARG00000103759 9581 3.206 - - 0.707 - 0.834 - 0.937 0.728 - fumarylacetoacetate hydrolase domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-040426-2499]
49. ucp2 ENSDARG00000043154 2921 3.201 0.822 - - - 0.718 - 0.879 - 0.782 uncoupling protein 2 [Source:ZFIN;Acc:ZDB-GENE-990708-8]
50. rbp2a ENSDARG00000070038, ENSDARG00000115141 1688 3.194 - - 0.730 - 0.723 0.847 0.894 - - retinol binding protein 2a, cellular [Source:ZFIN;Acc:ZDB-GENE-020320-2]
51. dap ENSDARG00000000069, ENSDARG00000114419 13155 3.185 0.807 - - 0.773 0.730 - 0.875 - - death-associated protein [Source:ZFIN;Acc:ZDB-GENE-000511-3]
52. SLC13A4 ENSDARG00000059053 2114 3.181 0.783 - - - 0.727 - 0.898 0.773 - solute carrier family 13 (sodium/sulfate symporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070424-71]
53. gdpd1 ENSDARG00000017261, ENSDARG00000111194 2853 3.119 - - 0.754 - - 0.729 0.917 - 0.719 glycerophosphodiester phosphodiesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040822-22]
54. pla2g12b ENSDARG00000015662 27239 3.11 - - 0.740 - 0.757 0.865 - 0.748 - phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
55. CNDP1 CNDP1 6456 3.109 - - 0.708 - 0.772 0.795 0.834 - -
56. APOB APOB 33858 3.108 0.811 - - - 0.741 0.834 0.722 - -
57. rrm2b ENSDARG00000033367, ENSDARG00000115899 2754 3.105 - - 0.783 - 0.714 0.767 0.841 - - ribonucleotide reductase M2 b [Source:ZFIN;Acc:ZDB-GENE-030616-614]
58. prdx5 ENSDARG00000055064 27445 3.102 0.784 - 0.726 - - 0.845 0.747 - - peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
59. CABZ01057488.1 ENSDARG00000110427 598 3.089 0.718 - 0.750 - - 0.824 0.797 - -
60. plg ENSDARG00000023111 2429 3.086 0.766 - - - 0.720 0.860 - 0.740 - plasminogen [Source:ZFIN;Acc:ZDB-GENE-030131-1411]
61. sfxn2 ENSDARG00000017960, ENSDARG00000111267 3869 3.085 - - 0.725 - - 0.858 0.792 - 0.710 sideroflexin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2831]
62. NCOA7_1 NCOA7_1 3222 3.082 0.793 - - - 0.734 0.812 - - 0.743
63. f2 ENSDARG00000036041 3129 3.077 - - 0.754 - - 0.866 0.741 0.716 - coagulation factor II (thrombin) [Source:ZFIN;Acc:ZDB-GENE-030131-4606]
64. ddt ENSDARG00000044751, ENSDARG00000109625 7433 3.075 - - 0.723 - - 0.804 0.803 0.745 - D-dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-040625-160]
65. abca1b ENSDARG00000079009 14119 3.074 - - 0.754 - - 0.887 0.720 0.713 - ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
66. renbp ENSDARG00000008931 1848 3.074 - - 0.714 - - 0.815 0.805 - 0.740 renin binding protein [Source:ZFIN;Acc:ZDB-GENE-041212-34]
67. APOB_1 APOB_1 2217 3.065 - - 0.792 - 0.701 0.842 - - 0.730
68. slc25a20 ENSDARG00000040401 9258 3.062 - - 0.734 0.720 - 0.817 - - 0.791 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1869]
69. slc3a2a ENSDARG00000036427, ENSDARG00000112231 2967 3.052 0.779 - 0.743 - 0.732 - 0.798 - - solute carrier family 3 (amino acid transporter heavy chain), member 2a [Source:ZFIN;Acc:ZDB-GENE-000831-3]
70. gnpda1 ENSDARG00000037307, ENSDARG00000109317, ENSDARG00000114846 2191 3.039 0.728 - 0.708 - - 0.722 0.881 - - glucosamine-6-phosphate deaminase 1 [Source:ZFIN;Acc:ZDB-GENE-050417-417]
71. ces2 ENSDARG00000041569, ENSDARG00000110630 5541 3.033 0.721 - 0.709 - - 0.890 - 0.713 - carboxylesterase 2 (intestine, liver) [Source:ZFIN;Acc:ZDB-GENE-061013-99]
72. si:dkey-69o16.5 ENSDARG00000070057 3628 3.025 - - 0.785 - 0.742 0.782 - - 0.716 si:dkey-69o16.5 [Source:ZFIN;Acc:ZDB-GENE-081104-432]
73. a2ml ENSDARG00000056314 11788 3.021 - 0.729 - - 0.797 - 0.742 - 0.753 alpha-2-macroglobulin-like [Source:ZFIN;Acc:ZDB-GENE-090212-1]
74. serping1 ENSDARG00000058053 1344 2.858 0.714 - 0.707 - - 0.724 - - 0.713 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1262]
75. ctsh ENSDARG00000041108 2873 2.673 0.871 - - - - 0.871 0.931 - - cathepsin H [Source:ZFIN;Acc:ZDB-GENE-030131-3539]
76. diabloa ENSDARG00000104172 2192 2.632 - 0.958 - - - 0.857 0.817 - - diablo, IAP-binding mitochondrial protein a [Source:ZFIN;Acc:ZDB-GENE-040426-1303]
77. lgals2b ENSDARG00000038153 2196 2.622 0.844 - - - - 0.861 0.917 - - lectin, galactoside-binding, soluble, 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1590]
78. nt5c3a ENSDARG00000058597 14299 2.606 - - - - 0.760 0.883 0.963 - - 5'-nucleotidase, cytosolic IIIA [Source:ZFIN;Acc:ZDB-GENE-030131-439]
79. tmed1a ENSDARG00000031325 1936 2.591 - 0.885 - - - 0.839 0.867 - - transmembrane p24 trafficking protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-229]
80. vtnb ENSDARG00000053831 2364 2.588 - - - - - 0.890 0.950 - 0.748 vitronectin b [Source:ZFIN;Acc:ZDB-GENE-041116-1]
81. prps1a ENSDARG00000015524 23738 2.568 - - 0.847 - 0.807 - 0.914 - - phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
82. fdps ENSDARG00000040890 4000 2.556 0.875 - - - - 0.778 0.903 - - farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) [Source:ZFIN;Acc:ZDB-GENE-050506-78]
83. pikfyve ENSDARG00000056112 1583 2.537 - 0.901 - - - 0.812 0.824 - - phosphoinositide kinase, FYVE finger containing [Source:ZFIN;Acc:ZDB-GENE-030131-9636]
84. g6pca.2 ENSDARG00000013721 2034 2.533 - - - - - 0.820 0.933 0.780 - glucose-6-phosphatase a, catalytic subunit, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050309-17]
85. zgc:152830 ENSDARG00000079932 12194 2.516 - - - - - 0.830 0.957 0.729 - zgc:152830 [Source:ZFIN;Acc:ZDB-GENE-090312-55]
86. cd2ap ENSDARG00000015224 2830 2.512 - 0.926 - - - 0.837 0.749 - - CD2-associated protein [Source:ZFIN;Acc:ZDB-GENE-030131-8078]
87. gnpda2 ENSDARG00000024443 6637 2.504 0.870 - - - - 0.924 0.710 - - glucosamine-6-phosphate deaminase 2 [Source:ZFIN;Acc:ZDB-GENE-091117-41]
88. slc25a1b ENSDARG00000076381 6213 2.496 - 0.888 - - - 0.704 0.904 - - slc25a1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-130114-1]
89. apoc1l apoc1l 398664 2.496 0.833 - - - - 0.886 0.777 - -
90. tmem176l.4 ENSDARG00000074390 1886 2.493 - 0.943 - - - 0.840 0.710 - - transmembrane protein 176l.4 [Source:ZFIN;Acc:ZDB-GENE-030131-3532]
91. cyp2aa4 ENSDARG00000098803 1762 2.492 0.706 - - - - 0.906 0.880 - - cytochrome P450, family 2, subfamily AA, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-040625-72]
92. paics ENSDARG00000033539 30682 2.491 0.910 - - - - - 0.829 - 0.752 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
93. lamp2 ENSDARG00000014914 5035 2.471 0.725 - - - - 0.798 0.948 - - lysosomal-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030729-9]
94. C3_2 C3_2 1084 2.463 - - - - - 0.811 0.936 - 0.716
95. etfb ENSDARG00000009250 13036 2.463 - - 0.735 - - 0.776 0.952 - - electron transfer flavoprotein subunit beta [Source:ZFIN;Acc:ZDB-GENE-040426-1931]
96. sardh ENSDARG00000058102, ENSDARG00000112110 2150 2.457 - - 0.733 - - 0.908 0.816 - - sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
97. epas1a ENSDARG00000008697 3225 2.454 - 0.882 - - - - 0.855 - 0.717 endothelial PAS domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4490]
98. hp_1 ENSDARG00000051890, ENSDARG00000095807 1049 2.448 - - - - - 0.772 0.895 0.781 - haptoglobin [Source:ZFIN;Acc:ZDB-GENE-030131-1259]
99. sid4 sid4 1358 2.441 - - 0.721 - - 0.860 0.860 - -
100. rbp2b ENSDARG00000093774, ENSDARG00000112080 1200 2.441 0.758 - - - - 0.949 0.734 - - retinol binding protein 2b, cellular [Source:ZFIN;Acc:ZDB-GENE-040715-7]

There are 1222 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA