Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rpa3

Gene Name Gene ID Reads Annotation
rpa3 ENSDARG00000002613 2923 replication protein A3 [Source:ZFIN;Acc:ZDB-GENE-040426-977]










Genes with expression patterns similar to rpa3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpa3 ENSDARG00000002613 2923 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication protein A3 [Source:ZFIN;Acc:ZDB-GENE-040426-977]
2. KIF4A KIF4A 3322 2.316 0.755 - 0.759 - - - 0.802 - -
3. polb ENSDARG00000003749 2049 2.313 0.819 0.789 - - - - 0.705 - - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
4. slbp ENSDARG00000100558 3405 2.294 - - 0.701 0.816 0.777 - - - - stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
5. syncripl ENSDARG00000026723 3889 2.286 - 0.851 - - 0.705 - 0.730 - - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
6. ddx39aa ENSDARG00000006225, ENSDARG00000116665 6675 2.277 - 0.717 0.756 - - 0.804 - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
7. fen1 ENSDARG00000011404 3358 2.219 - - 0.734 - - - 0.730 - 0.755 flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
8. si:dkey-67c22.2 ENSDARG00000055389 6410 1.721 - 0.937 - - - - 0.784 - - si:dkey-67c22.2 [Source:ZFIN;Acc:ZDB-GENE-030131-5845]
9. cdca5 ENSDARG00000044437 2041 1.675 - 0.874 - - - - - - 0.801 cell division cycle associated 5 [Source:ZFIN;Acc:ZDB-GENE-030131-235]
10. nup93 ENSDARG00000003487, ENSDARG00000111433 2474 1.64 - - - - 0.791 - 0.849 - - nucleoporin 93 [Source:ZFIN;Acc:ZDB-GENE-990415-46]
11. ccnf ENSDARG00000105046 1790 1.64 - - - - 0.874 - - - 0.766 cyclin F [Source:ZFIN;Acc:ZDB-GENE-021030-2]
12. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.631 - - - - 0.847 - 0.784 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
13. h3f3a 66671 1.616 0.776 - - - - - 0.840 - - H3 histone, family 3A, transcript variant X1
14. cdc23 ENSDARG00000044484 767 1.604 - - - - - 0.849 - - 0.755 CDC23 (cell division cycle 23, yeast, homolog) [Source:ZFIN;Acc:ZDB-GENE-040426-866]
15. psmd11b ENSDARG00000005134 4242 1.603 - 0.789 - - - - 0.814 - - proteasome 26S subunit, non-ATPase 11b [Source:ZFIN;Acc:ZDB-GENE-030131-984]
16. sumo3a ENSDARG00000028119 13447 1.594 - - - 0.772 - - 0.822 - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
17. prelid1a ENSDARG00000098671 4745 1.592 - 0.849 - - 0.743 - - - - PRELI domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1341]
18. wu:fq41a10 wu:fq41a10 7009 1.59 - - - - 0.831 - 0.759 - -
19. hnrnpub ENSDARG00000004735 16496 1.588 - - - - 0.807 - 0.781 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
20. cul4b ENSDARG00000060510 6053 1.588 - - - - 0.862 - 0.726 - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
21. snrpd1 ENSDARG00000011648 8615 1.587 - - 0.800 - 0.787 - - - - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
22. adssl ENSDARG00000012399 2271 1.585 - 0.768 - - 0.817 - - - - adenylosuccinate synthase, like [Source:ZFIN;Acc:ZDB-GENE-020419-28]
23. hnrnpa1 hnrnpa1 1302 1.584 - 0.879 - - - - 0.705 - -
24. dut ENSDARG00000106529 3120 1.584 - - - - 0.854 - 0.730 - - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
25. papolg ENSDARG00000012141 1445 1.578 - - - - 0.820 - - - 0.758 poly(A) polymerase gamma [Source:ZFIN;Acc:ZDB-GENE-040426-1256]
26. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.576 - - - - 0.841 - 0.735 - - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
27. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.574 - - - 0.796 - - 0.778 - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
28. unga ENSDARG00000042527 1169 1.572 - - - - 0.827 - 0.745 - - uracil DNA glycosylase a [Source:ZFIN;Acc:ZDB-GENE-040426-900]
29. zgc:113385 zgc:113385 297 1.568 - 0.857 - - - 0.711 - - -
30. cdc20 ENSDARG00000100741 3264 1.563 - 0.788 - - 0.775 - - - - cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
31. cdkn2aipnl ENSDARG00000053395 5107 1.563 - - 0.705 - - - - 0.858 - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
32. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.55 - - - - 0.707 - 0.843 - - si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
33. eva1ba ENSDARG00000102701 1480 1.547 - 0.835 - - 0.712 - - - - eva-1 homolog Ba (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-8941]
34. eif3ja ENSDARG00000012603 6324 1.546 - - - - 0.781 - 0.765 - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
35. si:ch211-288g17.3 ENSDARG00000070959 2425 1.543 - - - - 0.772 - 0.771 - - si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
36. ogfr ENSDARG00000037837 1001 1.537 - - - - 0.785 - - - 0.752 opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
37. setb ENSDARG00000003920 21788 1.536 - - - - - 0.703 0.833 - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
38. dctd ENSDARG00000036990 2168 1.53 - 0.760 - - 0.770 - - - - dCMP deaminase [Source:ZFIN;Acc:ZDB-GENE-050417-116]
39. extl3 ENSDARG00000026811 4815 1.526 - 0.744 - - - - 0.782 - - exostosin-like glycosyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-041124-2]
40. ccdc85ca ENSDARG00000005232 3218 1.526 - 0.775 - - - - 0.751 - - coiled-coil domain containing 85C, a [Source:ZFIN;Acc:ZDB-GENE-060825-198]
41. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 1.525 - - - - 0.807 - 0.718 - - LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
42. dscc1 ENSDARG00000019907 720 1.522 - - - - 0.774 - - - 0.748 DNA replication and sister chromatid cohesion 1 [Source:ZFIN;Acc:ZDB-GENE-040912-35]
43. u2af1 ENSDARG00000015325 3217 1.517 - - - 0.747 0.770 - - - - U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
44. ap3s2 ENSDARG00000039882 2149 1.517 - 0.756 - - - - - - 0.761 adaptor related protein complex 3 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-040718-274]
45. PELP1 ENSDARG00000079313 5771 1.515 - - - - - - 0.777 0.738 - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
46. dpy30 ENSDARG00000004427 7112 1.514 - - 0.740 0.774 - - - - - dpy-30 histone methyltransferase complex regulatory subunit [Source:ZFIN;Acc:ZDB-GENE-040718-136]
47. dek ENSDARG00000070108 2262 1.512 - - - 0.722 0.790 - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
48. tbl1xr1b ENSDARG00000008966 2203 1.51 - 0.767 - - - - - - 0.743 transducin (beta)-like 1 X-linked receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1192]
49. AGAP3 ENSDARG00000087822 4128 1.507 - 0.753 - - - - 0.754 - - ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 [Source:ZFIN;Acc:ZDB-GENE-110927-1]
50. fgfr1a ENSDARG00000011027 2705 1.506 - 0.734 - 0.772 - - - - - fibroblast growth factor receptor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-255]
51. tmed4 ENSDARG00000024954 3476 1.505 - 0.791 - - - - - 0.714 - transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
52. eef2a.1 ENSDARG00000042094 1781 1.504 - - - - - 0.744 0.760 - - eukaryotic translation elongation factor 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-500]
53. cltcb ENSDARG00000090716 5544 1.503 - - - - - 0.778 0.725 - - clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
54. trrap ENSDARG00000100623 3429 1.502 0.736 - - - - - - 0.766 - transformation/transcription domain-associated protein [Source:ZFIN;Acc:ZDB-GENE-050809-47]
55. ddx42 ENSDARG00000037928 1659 1.501 - - - - 0.768 - 0.733 - - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
56. ptbp2b ENSDARG00000015901 2458 1.499 - 0.768 - - - - 0.731 - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
57. dynll2a ENSDARG00000069790, ENSDARG00000114539 2328 1.498 - - - - 0.762 0.736 - - - dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11]
58. ufc1 ENSDARG00000022340 2618 1.494 - 0.764 - - - - - 0.730 - ubiquitin-fold modifier conjugating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040801-268]
59. psmd4b ENSDARG00000023279 2002 1.491 - - - - - - - 0.707 0.784 proteasome 26S subunit, non-ATPase 4b [Source:ZFIN;Acc:ZDB-GENE-050417-96]
60. zswim5 ENSDARG00000055900 4243 1.49 - 0.758 - - 0.732 - - - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
61. arid4a ENSDARG00000043873 4176 1.489 - - - - - 0.762 0.727 - - AT rich interactive domain 4A (RBP1-like) [Source:ZFIN;Acc:ZDB-GENE-050809-105]
62. cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 1.476 - 0.735 - - - - 0.741 - - CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
63. psmb7 ENSDARG00000037962 11542 1.475 0.775 - - - - - 0.700 - - proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
64. cpsf6 ENSDARG00000018618 3923 1.474 - - - - - - 0.742 - 0.732 cleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]
65. puf60a ENSDARG00000032175 5618 1.473 - - - - 0.736 - 0.737 - - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
66. cdk2 ENSDARG00000026577 2835 1.468 - 0.717 - - - - 0.751 - - cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
67. pofut1 ENSDARG00000008953 1157 1.468 - - - - - 0.712 0.756 - - protein O-fucosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040303-2]
68. MKI67 ENSDARG00000091150 11038 1.465 - - - 0.758 - - 0.707 - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
69. kpna4 ENSDARG00000023190 2505 1.465 - 0.756 - - 0.709 - - - - karyopherin alpha 4 (importin alpha 3) [Source:ZFIN;Acc:ZDB-GENE-030131-5584]
70. EIF1B ENSDARG00000029445 5034 1.465 - - - - 0.765 - 0.700 - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
71. fam76b ENSDARG00000012432 2722 1.461 - 0.703 - - - - 0.758 - - family with sequence similarity 76, member B [Source:ZFIN;Acc:ZDB-GENE-030131-6955]
72. huwe1 ENSDARG00000016782 6493 1.461 - 0.704 - - 0.757 - - - - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
73. sfrp1b ENSDARG00000057678, ENSDARG00000115373 95 1.46 - 0.716 - - - 0.744 - - - secreted frizzled-related protein 1b [Source:ZFIN;Acc:ZDB-GENE-061103-1]
74. ube2d2l ENSDARG00000099749 1462 1.459 - 0.754 - - - - - 0.705 - ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like [Source:ZFIN;Acc:ZDB-GENE-030131-7384]
75. sh3bgrl3 ENSDARG00000098075 3071 1.452 - 0.736 - - - 0.716 - - - SH3 domain binding glutamate-rich protein like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1059]
76. mettl14 ENSDARG00000070278, ENSDARG00000112383 278 1.452 - - - 0.748 - - 0.704 - - methyltransferase like 14 [Source:ZFIN;Acc:ZDB-GENE-040426-2328]
77. myclb ENSDARG00000034956, ENSDARG00000110185 1466 1.45 - - - - - 0.717 0.733 - - MYCL proto-oncogene, bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-5561]
78. arpc3 ENSDARG00000057882 10113 1.448 - 0.708 - - 0.740 - - - - actin related protein 2/3 complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040625-107]
79. mad2l1 ENSDARG00000004713 3398 1.434 - - - 0.718 - - 0.716 - - MAD2 mitotic arrest deficient-like 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030515-3]
80. tbc1d2b ENSDARG00000061986 247 1.432 - - - 0.729 - 0.703 - - - TBC1 domain family, member 2B [Source:ZFIN;Acc:ZDB-GENE-100922-148]
81. RANBP2 ENSDARG00000093125 1854 1.431 - - - - - - 0.727 - 0.704 RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848]
82. wdr3 ENSDARG00000011079 1403 1.428 - - - - 0.724 - 0.704 - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
83. tnpo2 ENSDARG00000038239 2469 1.42 - - - - - - 0.720 - 0.700 transportin 2 (importin 3, karyopherin beta 2b) [Source:ZFIN;Acc:ZDB-GENE-040822-16]
84. CU633849.1 CU633849.1 590 0.933 - 0.933 - - - - - - -
85. akr1a1b ENSDARG00000052030, ENSDARG00000112549 2505 0.93 - 0.930 - - - - - - - aldo-keto reductase family 1, member A1b (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-050417-118]
86. ck2a2a ck2a2a 1695 0.929 - 0.929 - - - - - - -
87. ptk2bb ENSDARG00000039577 776 0.923 - 0.923 - - - - - - - protein tyrosine kinase 2 beta, b [Source:ZFIN;Acc:ZDB-GENE-020507-1]
88. apool ENSDARG00000039374, ENSDARG00000111985 482 0.918 - 0.918 - - - - - - - apolipoprotein O-like [Source:ZFIN;Acc:ZDB-GENE-050327-76]
89. egfl7 ENSDARG00000100657 776 0.918 - 0.918 - - - - - - - EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
90. rhogd ENSDARG00000030608, ENSDARG00000112157 599 0.915 - 0.915 - - - - - - - ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
91. FRRS1_1 FRRS1_1 831 0.913 - 0.913 - - - - - - -
92. zgc:165582 ENSDARG00000074362 198 0.913 - 0.913 - - - - - - - zgc:165582 [Source:ZFIN;Acc:ZDB-GENE-070820-9]
93. ckap5 ENSDARG00000102674 5068 0.912 - 0.912 - - - - - - - cytoskeleton associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-051120-174]
94. jund ENSDARG00000067850 744 0.91 - 0.910 - - - - - - - JunD proto-oncogene, AP-1 transcription factor subunit [Source:ZFIN;Acc:ZDB-GENE-070725-2]
95. cercam ENSDARG00000079049, ENSDARG00000109573 2228 0.91 - 0.910 - - - - - - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
96. h6pd ENSDARG00000060153, ENSDARG00000114064 1927 0.908 - 0.908 - - - - - - - hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) [Source:ZFIN;Acc:ZDB-GENE-110408-60]
97. spock3 ENSDARG00000070266, ENSDARG00000110158 934 0.905 - 0.905 - - - - - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
98. slc25a11 ENSDARG00000035741 3377 0.905 - 0.905 - - - - - - - solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 [Source:ZFIN;Acc:ZDB-GENE-040625-79]
99. cox11 ENSDARG00000061004, ENSDARG00000115002 423 0.904 - 0.904 - - - - - - - cytochrome c oxidase assembly homolog 11 (yeast) [Source:ZFIN;Acc:ZDB-GENE-050506-82]
100. rangap1a ENSDARG00000041317 1456 0.903 - 0.903 - - - - - - - RAN GTPase activating protein 1a [Source:ZFIN;Acc:ZDB-GENE-060929-492]

There are 1253 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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