Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rpa1

Gene Name Gene ID Reads Annotation
rpa1 ENSDARG00000003938 4403 replication protein A1 [Source:ZFIN;Acc:ZDB-GENE-030912-3]










Genes with expression patterns similar to rpa1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rpa1 ENSDARG00000003938 4403 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication protein A1 [Source:ZFIN;Acc:ZDB-GENE-030912-3]
2. eif3s10 ENSDARG00000076815 10822 2.547 - 0.984 - - - 0.780 0.783 - - eukaryotic translation initiation factor 3, subunit 10 (theta) [Source:ZFIN;Acc:ZDB-GENE-030131-5726]
3. smc3 ENSDARG00000019000, ENSDARG00000112055 6553 2.296 - - 0.727 - - - 0.803 - 0.766 structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]
4. wasf3 wasf3 3287 1.821 - 0.864 - - - - - - 0.957
5. znf296 ENSDARG00000077897 658 1.779 - - - - - - 0.829 - 0.950 zinc finger protein 296 [Source:ZFIN;Acc:ZDB-GENE-050419-201]
6. ccdc22 ENSDARG00000052379 2276 1.778 - - - - - - 0.825 - 0.953 coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
7. fkbp8 ENSDARG00000001734 1709 1.773 - - - - - - 0.814 - 0.959 FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
8. anxa11b ENSDARG00000002632 5132 1.772 - 0.849 - - - - - - 0.923 annexin A11b [Source:ZFIN;Acc:ZDB-GENE-030707-5]
9. fastk ENSDARG00000077075 1619 1.765 - - - - - - 0.818 - 0.947 Fas-activated serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-070912-680]
10. abi1a ENSDARG00000010155 5631 1.75 - - - - - - 0.833 - 0.917 abl-interactor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1701]
11. prmt1 ENSDARG00000010246 11311 1.731 - - - - 0.911 - - - 0.820 protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
12. nr2f2 ENSDARG00000040926 5213 1.716 - - - - - 0.739 - - 0.977 nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
13. gapdhs ENSDARG00000039914 8760 1.704 - - - - - - 0.910 - 0.794 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:ZFIN;Acc:ZDB-GENE-020913-1]
14. ncl1 2835 1.7 - - - - - 0.742 - - 0.958 nicalin, transcript variant X3
15. CU019646.2 CU019646.2 519 1.696 - 0.866 - - - - 0.830 - -
16. wdr5 ENSDARG00000016903 4834 1.672 - - 0.704 - - - 0.968 - - WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
17. col16a1 ENSDARG00000009194 5600 1.662 - - - - - - 0.866 - 0.796 collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
18. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 1.658 - - - - - - 0.798 - 0.860 zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
19. akr1b1 ENSDARG00000006215 2511 1.658 - 0.866 - - - - 0.792 - - aldo-keto reductase family 1, member B1 (aldose reductase) [Source:ZFIN;Acc:ZDB-GENE-040625-7]
20. gpc4 ENSDARG00000015472 2529 1.656 - 0.865 - - - - 0.791 - - glypican 4 [Source:ZFIN;Acc:ZDB-GENE-011119-1]
21. git2b ENSDARG00000042791, ENSDARG00000111846 1332 1.654 - - - - - 0.704 - - 0.950 G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
22. st13 ENSDARG00000021973 7787 1.646 - - - - - 0.826 - - 0.820 ST13, Hsp70 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5395]
23. si:ch211-114c12.2 ENSDARG00000028542, ENSDARG00000111053 5495 1.619 - 0.855 - - - - 0.764 - - si:ch211-114c12.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8522]
24. polr2d ENSDARG00000076509 3386 1.614 - 0.861 - 0.753 - - - - - polymerase (RNA) II (DNA directed) polypeptide D [Source:ZFIN;Acc:ZDB-GENE-040714-2]
25. arl14ep ENSDARG00000001210 3029 1.599 - - - - - - - 0.722 0.877 ADP-ribosylation factor-like 14 effector protein [Source:ZFIN;Acc:ZDB-GENE-060825-216]
26. skp1 ENSDARG00000003151 8172 1.587 - 0.846 - - - - 0.741 - - S-phase kinase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1707]
27. kifc1 ENSDARG00000001558 6658 1.57 - - - - 0.739 - - 0.831 - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
28. CCNA2 ENSDARG00000011094 3996 1.564 - - 0.783 0.781 - - - - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
29. arid1aa ENSDARG00000101710 3644 1.561 - - - - 0.751 - 0.810 - - AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
30. pleca ENSDARG00000062590 16794 1.556 - 0.765 - - - - 0.791 - - plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
31. txnrd1 11401 1.549 - 0.847 - - 0.702 - - - - thioredoxin reductase 1
32. acsbg2 ENSDARG00000004094 2445 1.546 - - - - - 0.746 0.800 - - acyl-CoA synthetase bubblegum family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7099]
33. ptch1 ENSDARG00000016404, ENSDARG00000095859, ENSDARG00000116142 1113 1.545 - - - - - 0.712 - - 0.833 patched 1 [Source:ZFIN;Acc:ZDB-GENE-980526-196]
34. ptenb ENSDARG00000056623 5783 1.543 0.718 - - - - - - - 0.825 phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
35. tmem104 ENSDARG00000088560 859 1.542 - - - - - 0.716 0.826 - - transmembrane protein 104 [Source:ZFIN;Acc:ZDB-GENE-070822-4]
36. prpf8 ENSDARG00000026180 7026 1.51 - - - - - - 0.748 - 0.762 pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
37. Sep-12 Sep-12 1828 1.507 - - 0.708 - - - 0.799 - -
38. sumo3a ENSDARG00000028119 13447 1.505 0.704 - - 0.801 - - - - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
39. syncrip ENSDARG00000040184 24690 1.499 - 0.784 - - 0.715 - - - - synaptotagmin binding, cytoplasmic RNA interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4862]
40. setb ENSDARG00000003920 21788 1.48 - - - - 0.708 0.772 - - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
41. ddx3 ddx3 4076 1.475 - - - - - 0.713 0.762 - -
42. parp1 ENSDARG00000019529 6787 1.445 - - 0.733 - - - - 0.712 - poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
43. ranbp9 ENSDARG00000061048 2687 1.438 0.737 - - - - - - 0.701 - RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
44. CCDC106 CCDC106 1908 1.434 - - - 0.732 0.702 - - - -
45. FP245444.1 FP245444.1 1922 0.998 - 0.998 - - - - - - -
46. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 0.994 - 0.994 - - - - - - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
47. C2CD2 ENSDARG00000105000 2573 0.984 - - - - - - 0.984 - - C2 calcium-dependent domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-110728-1]
48. C22H6orf89 C22H6orf89 1076 0.981 - - - - - - 0.981 - -
49. sept9a ENSDARG00000020235 6881 0.98 - 0.980 - - - - - - - septin 9a [Source:ZFIN;Acc:ZDB-GENE-030131-9187]
50. pou2f1b ENSDARG00000007996 2172 0.978 - - - - - - - - 0.978 POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
51. bsnd ENSDARG00000086265 178 0.977 - - - - - - 0.977 - - barttin CLCNK-type chloride channel accessory beta subunit [Source:ZFIN;Acc:ZDB-GENE-070705-548]
52. ddx21 ENSDARG00000063626 6695 0.976 - - - - - - - - 0.976 DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Source:ZFIN;Acc:ZDB-GENE-031113-10]
53. pomt1 ENSDARG00000067670, ENSDARG00000112005 588 0.975 - - - - - - 0.975 - - protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
54. kpna4 ENSDARG00000023190 2505 0.973 - - - - - - - - 0.973 karyopherin alpha 4 (importin alpha 3) [Source:ZFIN;Acc:ZDB-GENE-030131-5584]
55. tcf25 ENSDARG00000040861 1506 0.973 - - - - - - 0.973 - - transcription factor 25 (basic helix-loop-helix) [Source:ZFIN;Acc:ZDB-GENE-040905-2]
56. KANSL1_1 KANSL1_1 1809 0.972 - - - - - - - - 0.972
57. nup188 ENSDARG00000030022 2398 0.972 - - - - - - - - 0.972 nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
58. SRGAP3 ENSDARG00000060309 5353 0.971 - - - - - - 0.971 - - SLIT-ROBO Rho GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-060524-4]
59. si:ch211-22i13.2 ENSDARG00000043485 4719 0.971 - - - - - - - - 0.971 si:ch211-22i13.2 [Source:ZFIN;Acc:ZDB-GENE-041014-143]
60. dbnla ENSDARG00000008170 2129 0.97 - - - - - - 0.970 - - drebrin-like a [Source:ZFIN;Acc:ZDB-GENE-040704-42]
61. rcor2 ENSDARG00000008278 1678 0.969 - - - - - - - - 0.969 REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
62. six3a ENSDARG00000058008, ENSDARG00000114971 586 0.969 - - - - - - - - 0.969 SIX homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-990415-127]
63. tfdp1b ENSDARG00000016304 3071 0.969 - - - - - - - - 0.969 transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
64. pcbp2 ENSDARG00000099039 4248 0.969 - - - - - - 0.969 - - poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
65. EEF1E1 ENSDARG00000071774 3806 0.968 - - - - - - - - 0.968 eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
66. ppig ENSDARG00000044431 3427 0.968 - - - - - - - - 0.968 peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
67. otub1a ENSDARG00000055536 2892 0.967 - - - - - - - - 0.967 OTU deubiquitinase, ubiquitin aldehyde binding 1a [Source:ZFIN;Acc:ZDB-GENE-040718-108]
68. cbl ENSDARG00000009958 1321 0.966 - - - - - - - - 0.966 Cbl proto-oncogene, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041114-207]
69. atf6 ENSDARG00000012656 3873 0.966 - - - - - - - - 0.966 activating transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-041014-328]
70. parvaa ENSDARG00000043710 3495 0.966 - - - - - - 0.966 - - parvin, alpha a [Source:ZFIN;Acc:ZDB-GENE-040721-2]
71. magi1b ENSDARG00000003169 2056 0.965 - - - - - - - - 0.965 membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
72. bcl9 ENSDARG00000036687 1124 0.965 - - - - - - - - 0.965 B cell CLL/lymphoma 9 [Source:ZFIN;Acc:ZDB-GENE-090313-135]
73. ccnb1 ENSDARG00000051923 3226 0.964 - - - - - - 0.964 - - cyclin B1 [Source:ZFIN;Acc:ZDB-GENE-000406-10]
74. smad2 ENSDARG00000006389 646 0.964 - - - - - - - - 0.964 SMAD family member 2 [Source:ZFIN;Acc:ZDB-GENE-990603-7]
75. homer3 homer3 1974 0.964 - - - - - - - - 0.964
76. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 0.963 - - - - - - - - 0.963 spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
77. cmip ENSDARG00000062933 4521 0.963 - - - - - - - - 0.963 c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
78. utp11l ENSDARG00000039958, ENSDARG00000109895 1509 0.963 - - - - - - - - 0.963 UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-8093]
79. pi4k2b ENSDARG00000013881 1337 0.962 - - - - - - - - 0.962 phosphatidylinositol 4-kinase type 2 beta [Source:ZFIN;Acc:ZDB-GENE-070112-990]
80. COL7A1 ENSDARG00000021720 2210 0.962 - - - - - - 0.962 - - collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
81. TRIO TRIO 1601 0.962 - - - - - - - - 0.962
82. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 0.962 - - - - - - - - 0.962 erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
83. dpp3 ENSDARG00000020676 2393 0.962 - - - - - - - - 0.962 dipeptidyl-peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1247]
84. CCDC71 CCDC71 2442 0.961 - - - - - - - - 0.961
85. KIF2A ENSDARG00000043571 1560 0.961 - - - - - - - - 0.961 kinesin family member 2A [Source:HGNC Symbol;Acc:HGNC:6318]
86. gstm3 gstm3 1164 0.96 - - - - - - - - 0.960
87. PARD3B_1 PARD3B_1 1735 0.96 - - - - - - - - 0.960
88. hnrnpk ENSDARG00000018914 8841 0.959 - - - - - - - - 0.959 heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
89. commd4 ENSDARG00000061946 3281 0.959 - - - - - - - - 0.959 COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
90. gpc1b ENSDARG00000090585 1393 0.959 - - - - - - - - 0.959 glypican 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1306]
91. tmem163a ENSDARG00000079858, ENSDARG00000116870 677 0.959 - - - - - - - - 0.959 transmembrane protein 163a [Source:ZFIN;Acc:ZDB-GENE-081104-429]
92. zgc:158343 ENSDARG00000099411, ENSDARG00000110524, ENSDARG00000110558, ENSDARG00000112808 1061 0.958 - - - - - - - - 0.958 zgc:158343 [Source:ZFIN;Acc:ZDB-GENE-061201-9]
93. atp6v1f ENSDARG00000045543 3445 0.958 - - - - - - - - 0.958 ATPase H+ transporting V1 subunit F [Source:ZFIN;Acc:ZDB-GENE-040718-259]
94. rab22a ENSDARG00000015807, ENSDARG00000114826 1627 0.958 - - - - - - - - 0.958 RAB22A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-161]
95. lamc1 ENSDARG00000036279 11025 0.957 - 0.957 - - - - - - - laminin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-021226-3]
96. im:7136729 im:7136729 1625 0.957 - - - - - - - - 0.957
97. syt4 ENSDARG00000036505 421 0.957 - - - - - - - - 0.957 synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
98. mri1 ENSDARG00000075754 2567 0.957 - - - - - - - - 0.957 methylthioribose-1-phosphate isomerase 1 [Source:ZFIN;Acc:ZDB-GENE-080204-109]
99. nol10 ENSDARG00000020077 984 0.957 - - - - - - - - 0.957 nucleolar protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-764]
100. ptprfa ENSDARG00000103479 1250 0.957 - - - - - - - - 0.957 protein tyrosine phosphatase, receptor type, f, a [Source:ZFIN;Acc:ZDB-GENE-020107-2]

There are 752 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA