Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rnps1

Gene Name Gene ID Reads Annotation
rnps1 ENSDARG00000116743 9994 RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]










Genes with expression patterns similar to rnps1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rnps1 ENSDARG00000116743 9994 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
2. banf1 ENSDARG00000037009 16466 3.334 - 0.850 - 0.942 0.815 0.727 - - - barrier to autointegration factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6657]
3. rbb4l ENSDARG00000015208 5542 3.177 - - 0.783 0.869 0.716 0.809 - - - retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
4. prpf8 ENSDARG00000026180 7026 2.892 0.704 - 0.759 - 0.711 0.718 - - - pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
5. u2af2b ENSDARG00000011740 6946 2.48 - - 0.848 - - 0.813 0.819 - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
6. prp19 prp19 4804 2.446 - - 0.744 - 0.818 - - - 0.884
7. serpinh1a ENSDARG00000075954 6488 2.429 - 0.938 - - - - 0.790 0.701 - serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a [Source:ZFIN;Acc:ZDB-GENE-080219-21]
8. nipblb ENSDARG00000061052 6109 2.335 - - - 0.873 - 0.758 0.704 - - nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
9. cenpe ENSDARG00000063385 4428 2.325 - - 0.718 0.872 - - 0.735 - - centromere protein E [Source:ZFIN;Acc:ZDB-GENE-060929-860]
10. ilf3a ENSDARG00000058660, ENSDARG00000116860 3760 2.318 - - 0.769 - - - 0.775 0.774 - interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
11. uba1 ENSDARG00000037559 11579 2.309 - - - - 0.877 0.720 0.712 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
12. grb2b ENSDARG00000038059 9050 2.303 - - 0.715 - - 0.842 0.746 - - growth factor receptor-bound protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1975]
13. ddx39aa ENSDARG00000006225, ENSDARG00000116665 6675 2.3 - - 0.722 - - - 0.767 0.811 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
14. rab18a ENSDARG00000055291, ENSDARG00000111917 2088 2.297 - - - - - - 0.764 0.778 0.755 RAB18A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030131-3980]
15. h2afva ENSDARG00000068820 16427 2.295 - - - - - 0.779 0.715 - 0.801 H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
16. kif22 ENSDARG00000102624 3694 2.251 - - 0.710 - - 0.746 0.795 - - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
17. ube2e3 ENSDARG00000012244 8909 2.246 0.733 - 0.733 - - 0.780 - - - ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-408]
18. psmc5 ENSDARG00000015315 8458 2.233 - - 0.714 - - 0.719 0.800 - - proteasome 26S subunit, ATPase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6547]
19. scaf1 ENSDARG00000054010 3752 2.233 - - 0.701 - - 0.784 0.748 - - SR-related CTD-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-120215-214]
20. smarcd1 ENSDARG00000019004 6028 2.232 - - - - 0.769 0.700 0.763 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
21. morc2 ENSDARG00000028539 3259 2.219 - - 0.720 - 0.771 0.728 - - - MORC family CW-type zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-040822-40]
22. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 2.213 - - 0.719 - 0.776 - 0.718 - - PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
23. nucks1b ENSDARG00000012777 4468 2.196 - - - - 0.732 0.718 0.746 - - nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
24. llgl1 ENSDARG00000009693 4205 2.195 - - 0.701 - 0.757 - 0.737 - - lethal giant larvae homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-060825-69]
25. snrpd1 ENSDARG00000011648 8615 2.137 0.709 - 0.709 - - 0.719 - - - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
26. jam3b ENSDARG00000061794 5655 1.805 - 0.926 - - - - - - 0.879 junctional adhesion molecule 3b [Source:ZFIN;Acc:ZDB-GENE-030131-441]
27. kifc1 ENSDARG00000001558 6658 1.753 - 0.910 - - - - 0.843 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
28. alyref ENSDARG00000077732 25934 1.752 - 0.944 - - - 0.808 - - - Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
29. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.733 - - - - - 0.892 0.841 - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
30. anp32b ENSDARG00000023330 25013 1.728 - - - - - 0.849 0.879 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
31. smarca4 smarca4 9726 1.682 - - - - - 0.824 0.858 - -
32. senp3a ENSDARG00000095538, ENSDARG00000116812 2292 1.669 - - - 0.875 - - 0.794 - - SUMO specific peptidase 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2303]
33. kif11 ENSDARG00000010948 4973 1.665 - - 0.791 0.874 - - - - - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
34. efnb3b ENSDARG00000042277 5823 1.659 - - - - - - 0.791 0.868 - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
35. fam96b 2255 1.65 - - - 0.876 - - - 0.774 - family with sequence similarity 96, member B
36. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 1.647 - - 0.776 0.871 - - - - - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
37. xpo1a ENSDARG00000078041 3544 1.647 - - - - - 0.821 - 0.826 - exportin 1 (CRM1 homolog, yeast) a [Source:ZFIN;Acc:ZDB-GENE-050309-201]
38. MARK4 ENSDARG00000024966 3377 1.641 - - - 0.876 - - - 0.765 - microtubule affinity regulating kinase 4 [Source:HGNC Symbol;Acc:HGNC:13538]
39. eif3s6ip ENSDARG00000101082 18515 1.638 0.753 0.885 - - - - - - - eukaryotic translation initiation factor 3, subunit 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2138]
40. ANKRD11 ENSDARG00000051886 10024 1.636 - - - - - - 0.748 - 0.888 ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
41. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.635 - - 0.741 - - - 0.894 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
42. cpsf3 ENSDARG00000027649 6897 1.634 - - - - - - 0.843 0.791 - cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
43. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 1.629 - - 0.763 - - - 0.866 - - nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
44. ammecr1 ENSDARG00000012892 14475 1.626 - - - - - - 0.748 - 0.878 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
45. cnot6 cnot6 7029 1.624 - - - - - - 0.799 - 0.825
46. ankhd1 ENSDARG00000077860 5510 1.621 - - - - - 0.795 0.826 - - ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
47. HNRNPAB HNRNPAB 22267 1.614 - - - 0.833 - - 0.781 - -
48. csnk1da ENSDARG00000008370 3469 1.613 - - - - - 0.748 - - 0.865 casein kinase 1, delta a [Source:ZFIN;Acc:ZDB-GENE-030131-825]
49. atp6v1c1a ENSDARG00000023967 4611 1.611 - - - 0.869 - - 0.742 - - ATPase H+ transporting V1 subunit C1a [Source:ZFIN;Acc:ZDB-GENE-030616-612]
50. kctd10 ENSDARG00000017115 1659 1.608 - - - 0.875 - - - 0.733 - potassium channel tetramerization domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-2843]
51. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.606 - - 0.811 - - - 0.795 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
52. homez homez 1875 1.605 - - - - - 0.773 0.832 - -
53. comtb ENSDARG00000025679, ENSDARG00000111678 1692 1.604 - - - 0.875 - - - - 0.729 catechol-O-methyltransferase b [Source:ZFIN;Acc:ZDB-GENE-040724-164]
54. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 1.604 - - - 0.869 - - 0.735 - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
55. ppp2cb ENSDARG00000099241, ENSDARG00000111489 25466 1.602 - - - - - - 0.819 - 0.783 protein phosphatase 2, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-040426-2487]
56. snrpf ENSDARG00000105037 10241 1.601 - - - - - 0.764 0.837 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
57. nrf1 ENSDARG00000000018 4683 1.598 - - - - - - - 0.737 0.861 nuclear respiratory factor 1 [Source:ZFIN;Acc:ZDB-GENE-001221-1]
58. parp1 ENSDARG00000019529 6787 1.597 - - 0.743 - 0.854 - - - - poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
59. mbd3a ENSDARG00000061774 4047 1.591 - - - - - 0.842 - 0.749 - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
60. eif4ebp2 ENSDARG00000031819 13168 1.59 - - - 0.837 - 0.753 - - - eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
61. ssbp4 ENSDARG00000056483 10196 1.59 - - - - - 0.773 0.817 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
62. tle2 5014 1.589 - - - - 0.700 - - - 0.889 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
63. hnrnpr ENSDARG00000014569 3423 1.589 - - - - 0.793 0.796 - - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
64. eif5a2 ENSDARG00000056186 43804 1.584 - 0.794 - 0.790 - - - - - eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
65. dctd ENSDARG00000036990 2168 1.583 - - - 0.876 - - 0.707 - - dCMP deaminase [Source:ZFIN;Acc:ZDB-GENE-050417-116]
66. SMAD4 SMAD4 3233 1.583 - - - - - 0.862 0.721 - -
67. pebp1 ENSDARG00000042069 6651 1.575 - - - - 0.764 - - 0.811 - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
68. srsf6b ENSDARG00000016783 9926 1.572 - - - - 0.764 - 0.808 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
69. chd7 ENSDARG00000075211 12085 1.571 0.762 - - - 0.809 - - - - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
70. actr1 ENSDARG00000011611 3879 1.569 - - - - - 0.759 0.810 - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
71. myef2 ENSDARG00000059398 6050 1.568 - - - - 0.708 - 0.860 - - myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
72. SSBP4 ENSDARG00000056483 5156 1.566 - - - - - - 0.745 0.821 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
73. kdm1a ENSDARG00000060679 6152 1.565 - - 0.766 - - - 0.799 - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
74. pl10 pl10 10795 1.564 - - - 0.849 - - 0.715 - -
75. paxip1 ENSDARG00000005606 1417 1.564 - - - - - - 0.782 0.782 - PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
76. brd2a ENSDARG00000022280 3481 1.551 - - - - - 0.781 0.770 - - bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
77. cited4a ENSDARG00000035990 2762 1.55 - - - - - 0.765 - - 0.785 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a [Source:ZFIN;Acc:ZDB-GENE-030131-7661]
78. vps29 ENSDARG00000069521 5599 1.548 - - - - - - 0.755 - 0.793 vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8764]
79. ube2v2 ENSDARG00000028198 23341 1.547 - - - 0.842 - - 0.705 - - ubiquitin-conjugating enzyme E2 variant 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2919]
80. akirin2 ENSDARG00000058729 13245 1.546 - 0.708 - - - - - - 0.838 akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
81. si:dkey-67c22.2 ENSDARG00000055389 6410 1.546 - - - - 0.715 - 0.831 - - si:dkey-67c22.2 [Source:ZFIN;Acc:ZDB-GENE-030131-5845]
82. TNRC6A ENSDARG00000079688 14433 1.544 - - - - - 0.803 0.741 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
83. eif3g ENSDARG00000016889 10367 1.544 - - - - - 0.781 0.763 - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
84. hoxd9a ENSDARG00000059274 3414 1.543 - - - - - 0.748 0.795 - - homeobox D9a [Source:ZFIN;Acc:ZDB-GENE-990415-121]
85. CABZ01087568.1 CABZ01087568.1 1487 1.543 - - - - - 0.726 0.817 - -
86. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.538 - - - - - 0.787 - 0.751 - SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
87. prmt1 ENSDARG00000010246 11311 1.536 - - 0.746 - - - 0.790 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
88. hdac1 ENSDARG00000015427 19804 1.533 - - 0.811 - - 0.722 - - - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
89. msi2b ENSDARG00000032614 3095 1.533 - - - - - - - 0.804 0.729 musashi RNA-binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1268]
90. taf9 ENSDARG00000077870 6992 1.532 - 0.717 - - - - 0.815 - - TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-204]
91. tfdp1b ENSDARG00000016304 3071 1.531 - - - - - 0.722 0.809 - - transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
92. fen1 ENSDARG00000011404 3358 1.527 - - 0.803 - - - 0.724 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
93. ddx39ab ENSDARG00000015111 11619 1.526 - - - - - 0.744 0.782 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
94. arih2 ENSDARG00000012848 7087 1.524 - - - - - 0.712 0.812 - - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
95. bud31 ENSDARG00000017084 3892 1.524 - - - - - 0.756 0.768 - - BUD31 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040720-3]
96. nucks1a ENSDARG00000078473 28285 1.523 - - 0.802 - - 0.721 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
97. ctnnb1 ENSDARG00000014571 12004 1.521 - - 0.757 - - 0.764 - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
98. nup155 ENSDARG00000001777 3417 1.521 - - - - 0.716 - 0.805 - - nucleoporin 155 [Source:ZFIN;Acc:ZDB-GENE-040426-711]
99. hnrpl 6412 1.52 - - 0.766 - - - 0.754 - - heterogeneous nuclear ribonucleoprotein L, transcript variant X1
100. tsn ENSDARG00000041830, ENSDARG00000111147 1268 1.519 - - - - - - 0.753 0.766 - translin [Source:ZFIN;Acc:ZDB-GENE-030131-6039]

There are 1188 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA