Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rnf40

Gene Name Gene ID Reads Annotation
rnf40 ENSDARG00000054201, ENSDARG00000114667 2440 ring finger protein 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6607]










Genes with expression patterns similar to rnf40

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rnf40 ENSDARG00000054201, ENSDARG00000114667 2440 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ring finger protein 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6607]
2. snrpc ENSDARG00000009871 9567 2.334 0.818 - - - - - 0.742 - 0.774 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
3. stox2a ENSDARG00000070162 1620 2.32 - 0.786 - - - 0.754 0.780 - - storkhead box 2a [Source:ZFIN;Acc:ZDB-GENE-090313-101]
4. prmt1 ENSDARG00000010246 11311 2.297 - 0.759 - - - - 0.789 0.749 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
5. ubr2 ENSDARG00000070164 3960 2.252 - - - 0.719 - 0.821 - 0.712 - ubiquitin protein ligase E3 component n-recognin 2 [Source:ZFIN;Acc:ZDB-GENE-081107-29]
6. polr2k ENSDARG00000075616 2047 2.248 - - - - - 0.744 0.771 0.733 - polymerase (RNA) II (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-070820-18]
7. C20H12orf57 C20H12orf57 3325 2.229 0.708 - - - - 0.816 0.705 - -
8. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 2.181 - - - - - 0.727 0.740 - 0.714 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
9. elof1 ENSDARG00000099453 6176 2.148 0.708 - - - - 0.707 0.733 - - ELF1 homolog, elongation factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1385]
10. mtx2 ENSDARG00000029415 2205 1.732 - 0.850 0.882 - - - - - - metaxin 2 [Source:ZFIN;Acc:ZDB-GENE-021210-2]
11. plxnb1b ENSDARG00000017211 4676 1.73 - - 0.877 - - - - 0.853 - plexin b1b [Source:ZFIN;Acc:ZDB-GENE-090812-4]
12. celsr1b ENSDARG00000058259 1219 1.714 - - 0.891 - - - - 0.823 - cadherin EGF LAG seven-pass G-type receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050823-4]
13. fam102aa ENSDARG00000102566 903 1.704 - 0.896 - - - 0.808 - - - family with sequence similarity 102, member Aa [Source:ZFIN;Acc:ZDB-GENE-081104-233]
14. dna2 ENSDARG00000078759 846 1.702 - - 0.892 - - - - 0.810 - DNA replication helicase/nuclease 2 [Source:ZFIN;Acc:ZDB-GENE-090313-71]
15. CR954963.1 ENSDARG00000097153 1135 1.701 - - 0.892 - - - - 0.809 -
16. lsm14aa ENSDARG00000006600 2298 1.695 - - 0.886 - - - 0.809 - - LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]
17. MYO1D ENSDARG00000036863 768 1.69 - - 0.893 - - - - 0.797 - myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
18. psmb6 ENSDARG00000002240 8015 1.667 - - 0.928 - - - - - 0.739 proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
19. usp7 ENSDARG00000073710 7017 1.663 - - - - - - 0.912 - 0.751 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
20. si:dkey-193c22.2 ENSDARG00000076735 2791 1.65 - - 0.882 - - 0.768 - - - si:dkey-193c22.2 [Source:ZFIN;Acc:ZDB-GENE-070705-337]
21. pias4a ENSDARG00000007081 4264 1.646 - - 0.850 - - - 0.796 - - protein inhibitor of activated STAT, 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2734]
22. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.639 - - 0.839 - - 0.800 - - - structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
23. C11H12orf10 C11H12orf10 1305 1.633 - 0.746 0.887 - - - - - -
24. mknk1 ENSDARG00000018411 749 1.622 - 0.730 0.892 - - - - - - MAP kinase interacting serine/threonine kinase 1 [Source:ZFIN;Acc:ZDB-GENE-080220-11]
25. mier1a ENSDARG00000041072 1690 1.622 - 0.804 - - - - - 0.818 - mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
26. supt16h ENSDARG00000079949 4755 1.618 - 0.764 0.854 - - - - - - SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
27. lztr1 ENSDARG00000015905, ENSDARG00000114621 632 1.615 - 0.819 - - - - - 0.796 - leucine-zipper-like transcription regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9564]
28. ftr29 ENSDARG00000075355 172 1.614 - - - - - 0.813 - 0.801 - finTRIM family, member 29 [Source:ZFIN;Acc:ZDB-GENE-050417-159]
29. ireb2 ENSDARG00000021466 699 1.613 - 0.830 - - - - - 0.783 - iron-responsive element binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-051205-1]
30. atp5ia 4773 1.611 - - - - - 0.872 - 0.739 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit Ea
31. e2f8 ENSDARG00000057323 1432 1.609 - - - - - 0.898 - - 0.711 E2F transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-041111-260]
32. tmem2 2572 1.608 - - - - - 0.811 - 0.797 - transmembrane protein 2, transcript variant X1
33. asna1 ENSDARG00000018190 5253 1.608 - - 0.874 - - - - 0.734 - arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [Source:ZFIN;Acc:ZDB-GENE-040625-120]
34. SLC12A6 SLC12A6 883 1.606 - - - - - 0.864 0.742 - -
35. stx12 ENSDARG00000098813 2576 1.605 - 0.768 - - - 0.837 - - - syntaxin 12 [Source:ZFIN;Acc:ZDB-GENE-040625-11]
36. zgc:110626 ENSDARG00000053159 1124 1.601 - 0.818 - - - - - 0.783 - zgc:110626 [Source:ZFIN;Acc:ZDB-GENE-050417-447]
37. tada3l ENSDARG00000058220, ENSDARG00000113214, ENSDARG00000115305 2257 1.596 - - - - - 0.792 - 0.804 - transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:ZFIN;Acc:ZDB-GENE-030131-6725]
38. nanos1 ENSDARG00000109337 2494 1.596 - - 0.888 - - - - 0.708 - nanos homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1623]
39. tmeff1b ENSDARG00000056740 11253 1.596 - - 0.876 0.720 - - - - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
40. daam1b ENSDARG00000009689 1520 1.595 - - 0.891 - - 0.704 - - - dishevelled associated activator of morphogenesis 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4212]
41. HYAL2 HYAL2 936 1.592 - 0.781 - - - - 0.811 - -
42. alas2 ENSDARG00000038643, ENSDARG00000113125 4935 1.59 - 0.720 0.870 - - - - - - aminolevulinate, delta-, synthase 2 [Source:ZFIN;Acc:ZDB-GENE-001229-1]
43. mpped2 ENSDARG00000034443, ENSDARG00000114674 527 1.582 - - - - - 0.812 - 0.770 - metallophosphoesterase domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8903]
44. trappc3 ENSDARG00000045364 1021 1.576 - 0.749 - - - 0.827 - - - trafficking protein particle complex 3 [Source:ZFIN;Acc:ZDB-GENE-040801-120]
45. topbp1 ENSDARG00000059322 241 1.571 - 0.762 - - - - - 0.809 - DNA topoisomerase II binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060626-1]
46. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 1.567 - 0.802 - - - - 0.765 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
47. myef2 ENSDARG00000059398 6050 1.567 - - - - - 0.835 0.732 - - myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
48. smfn ENSDARG00000009806 1280 1.565 - - - - - - 0.754 0.811 - small fragment nuclease [Source:ZFIN;Acc:ZDB-GENE-040426-1709]
49. emc4_1 ENSDARG00000039268 443 1.56 - - - - - 0.791 - 0.769 - ER membrane protein complex subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1891]
50. mpzl2b ENSDARG00000027345, ENSDARG00000113465 575 1.555 - 0.783 - - - - - 0.772 - myelin protein zero-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8774]
51. si:dkey-19e4.5 ENSDARG00000089886 2562 1.555 - - - - - - 0.734 0.821 - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
52. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 1.552 - 0.841 - - - - 0.711 - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
53. tenm3 ENSDARG00000005479 3799 1.551 - - - - - 0.789 0.762 - - teneurin transmembrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-990714-19]
54. med19a ENSDARG00000037392, ENSDARG00000114246 2231 1.548 - 0.808 - - - - 0.740 - - mediator complex subunit 19a [Source:ZFIN;Acc:ZDB-GENE-060929-232]
55. C3H16orf72 C3H16orf72 2059 1.547 - - - - - 0.808 - 0.739 -
56. snx5 ENSDARG00000020442 2463 1.546 - 0.804 - 0.742 - - - - - sorting nexin 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2857]
57. camsap1b ENSDARG00000035122 492 1.543 - 0.711 - - - - - 0.832 - calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
58. CYYR1 ENSDARG00000103783 4107 1.54 - - - 0.801 - 0.739 - - - cysteine/tyrosine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2356]
59. SERBP1 SERBP1 9276 1.54 - - - - - 0.795 0.745 - -
60. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.539 - 0.712 - - - - - 0.827 - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
61. ppm1g ENSDARG00000075559 6516 1.537 0.823 0.714 - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
62. hn1b hn1b 7325 1.536 - 0.789 - - - 0.747 - - -
63. si:ch73-46j18.5 ENSDARG00000092467 6002 1.536 - 0.787 - - - - 0.749 - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
64. pogza ENSDARG00000054778 1495 1.536 - - - - - 0.717 - 0.819 - pogo transposable element derived with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-040914-76]
65. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.535 - - - - - - 0.823 - 0.712 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
66. zfpl1 ENSDARG00000103453 860 1.534 - - - - - 0.817 0.717 - - zinc finger protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1255]
67. exoc5 ENSDARG00000060323 2450 1.533 - - - - - 0.731 - 0.802 - exocyst complex component 5 [Source:ZFIN;Acc:ZDB-GENE-080204-126]
68. GUSB ENSDARG00000063126 2712 1.532 - 0.764 - - - 0.768 - - - glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
69. ube2i2 ube2i2 4828 1.531 - - - - - 0.817 0.714 - -
70. gon4l ENSDARG00000005867 982 1.53 - - - - - 0.808 - - 0.722 gon-4-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-070117-2447]
71. rbb4 rbb4 15541 1.529 - - - - - - 0.790 0.739 -
72. ephb4a ENSDARG00000100725 1749 1.527 - 0.818 - - - - 0.709 - - eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
73. map3k1 ENSDARG00000098405 3043 1.526 - 0.818 - - - 0.708 - - - mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-090313-412]
74. mta2 ENSDARG00000013031 2932 1.523 - 0.800 - - - - 0.723 - - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
75. srsf4 ENSDARG00000105293 9657 1.523 - 0.720 - - - - 0.803 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
76. NOP14 ENSDARG00000098859 1288 1.521 - - - - - 0.760 - 0.761 - NOP14 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9691]
77. POLE4 ENSDARG00000013016 848 1.519 - 0.753 - - - - - 0.766 - polymerase (DNA-directed), epsilon 4, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-050522-309]
78. bub1bb ENSDARG00000074927 1667 1.517 - - - - - - - 0.816 0.701 BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
79. rnf8 ENSDARG00000044949 751 1.517 - 0.760 - - - 0.757 - - - ring finger protein 8, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-849]
80. lnx2b ENSDARG00000071478 654 1.515 - 0.714 - - - - - 0.801 - ligand of numb-protein X 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2500]
81. ubp1 ENSDARG00000018000 1047 1.514 - - - 0.792 - 0.722 - - - upstream binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-870]
82. g3bp1 ENSDARG00000017741 7622 1.513 - - - - - - 0.744 - 0.769 GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
83. sf1 ENSDARG00000008188 5142 1.513 - - - - - 0.763 0.750 - - splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
84. znf131 ENSDARG00000068400, ENSDARG00000110506 920 1.513 - - - - - - - 0.789 0.724 zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
85. bscl2 ENSDARG00000037008 429 1.512 - - - - - 0.711 - 0.801 - Berardinelli-Seip congenital lipodystrophy 2 (seipin) [Source:ZFIN;Acc:ZDB-GENE-051113-140]
86. u2af1 ENSDARG00000015325 3217 1.511 - - - - - - 0.767 - 0.744 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
87. tspan14 ENSDARG00000055938, ENSDARG00000117111 4518 1.51 - - 0.796 - - - 0.714 - - tetraspanin 14 [Source:ZFIN;Acc:ZDB-GENE-060825-329]
88. HNRNPA2B1 HNRNPA2B1 14997 1.509 - - 0.714 - - - 0.795 - -
89. atf7ip ENSDARG00000069619 5495 1.509 - - - - - - 0.771 0.738 - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
90. tmx2b ENSDARG00000007786 3151 1.508 - 0.771 - - - - 0.737 - - thioredoxin-related transmembrane protein 2b [Source:ZFIN;Acc:ZDB-GENE-040625-105]
91. ppp2r1a ppp2r1a 11291 1.508 - - - - - 0.717 0.791 - -
92. si:ch211-10d23.5 ENSDARG00000095510 2632 1.507 - 0.784 - 0.723 - - - - - si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
93. lrrc40 ENSDARG00000017708 1156 1.506 - 0.737 - - - - - 0.769 - leucine rich repeat containing 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6062]
94. si:dkey-30k6.5 ENSDARG00000057238 617 1.505 - 0.745 - - - - - 0.760 - si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299]
95. pak2b ENSDARG00000018476 4331 1.505 - 0.779 - - - - 0.726 - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
96. sf3a3 ENSDARG00000100114 4511 1.5 0.710 - - - - - - 0.790 - splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
97. snrpd3l ENSDARG00000076283 7655 1.499 - - - - - - 0.795 - 0.704 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
98. med22 ENSDARG00000014148 1307 1.494 - 0.708 - - - - - 0.786 - mediator complex subunit 22 [Source:ZFIN;Acc:ZDB-GENE-040625-156]
99. nedd8 ENSDARG00000007989 3896 1.492 0.705 - 0.787 - - - - - - neural precursor cell expressed, developmentally down-regulated 8 [Source:ZFIN;Acc:ZDB-GENE-030616-588]
100. cbx5 ENSDARG00000061187 24026 1.489 - - 0.723 - - - 0.766 - - chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]

There are 1504 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA