Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rif1

Gene Name Gene ID Reads Annotation
rif1 ENSDARG00000062650, ENSDARG00000110568 1751 replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]










Genes with expression patterns similar to rif1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rif1 ENSDARG00000062650, ENSDARG00000110568 1751 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
2. ryr1a ENSDARG00000011422 2377 2.528 - 0.808 - - - 0.721 0.999 - - ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
3. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 2.481 - 0.804 - - - 0.934 - - 0.743 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
4. efnb2a ENSDARG00000020164 5262 2.295 - 0.772 - 0.799 - - - - 0.724 ephrin-B2a [Source:ZFIN;Acc:ZDB-GENE-990415-67]
5. meis2b ENSDARG00000077840 5166 2.265 - 0.707 - 0.795 - 0.763 - - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
6. oafa ENSDARG00000075851 2015 1.856 - - - - - 0.856 1.000 - - OAF homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090917-1]
7. vcl vcl 6667 1.822 - 0.826 - - - - 0.996 - -
8. fam160a1 fam160a1 1445 1.794 - - - - - 0.794 1.000 - -
9. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.77 - - - 0.770 - - 1.000 - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
10. ttll4 ENSDARG00000078935 1663 1.765 - 0.765 - - - - 1.000 - - tubulin tyrosine ligase-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-313]
11. SNORD33 SNORD33 3284 1.752 - - - - - 0.752 1.000 - -
12. SEC24B ENSDARG00000071906 1018 1.722 - - - 0.847 - 0.875 - - - SEC24 homolog B, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6565]
13. ncl ENSDARG00000002710 16951 1.7 - - - - - - 0.996 - 0.704 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
14. zmym4 ENSDARG00000035823 347 1.693 - - - 0.802 - 0.891 - - - zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
15. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.675 - - - - - 0.888 - 0.787 - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
16. ppil2 ENSDARG00000002016, ENSDARG00000116167 914 1.639 - - - - - 0.916 - 0.723 - peptidylprolyl isomerase (cyclophilin)-like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1096]
17. mesdc2 776 1.636 - 0.725 - - - 0.911 - - - mesoderm development candidate 2, transcript variant X2
18. GPR161 ENSDARG00000055659 1067 1.627 - 0.737 - - - 0.890 - - - G protein-coupled receptor 161 [Source:ZFIN;Acc:ZDB-GENE-030616-58]
19. INO80B ENSDARG00000062749 844 1.618 - - - 0.727 - 0.891 - - - INO80 complex subunit B [Source:ZFIN;Acc:ZDB-GENE-061013-69]
20. pip5k1aa ENSDARG00000100396 1644 1.618 - - - 0.705 - 0.913 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, a [Source:ZFIN;Acc:ZDB-GENE-050522-517]
21. ADAMTSL4 ENSDARG00000063407 1045 1.615 - 0.739 - - - 0.876 - - - ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
22. mif ENSDARG00000071336 1328 1.61 - 0.726 - - - 0.884 - - - macrophage migration inhibitory factor [Source:ZFIN;Acc:ZDB-GENE-080708-1]
23. uba3 ENSDARG00000057987, ENSDARG00000116639 1181 1.608 - - - - - 0.847 - - 0.761 ubiquitin-like modifier activating enzyme 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2825]
24. rwdd ENSDARG00000068256 964 1.589 - 0.713 - - - 0.876 - - - RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
25. marcksa ENSDARG00000004049 2518 1.583 - - - 0.848 - - - - 0.735 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
26. gipc1 ENSDARG00000104483 2913 1.578 - 0.743 - 0.835 - - - - - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
27. mctp2a ENSDARG00000001414 307 1.573 - - - 0.711 - 0.862 - - - multiple C2 domains, transmembrane 2a [Source:ZFIN;Acc:ZDB-GENE-040724-63]
28. mxd3 ENSDARG00000098350 3040 1.573 - - - - - 0.853 - - 0.720 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
29. brd1b ENSDARG00000051798 1712 1.572 - - - - - 0.867 - - 0.705 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
30. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.57 - - - 0.811 - - - - 0.759 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
31. eif4h ENSDARG00000042252 6742 1.552 - - - 0.790 - - - - 0.762 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
32. hnrnpub ENSDARG00000004735 16496 1.55 - - - 0.778 - - - - 0.772 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
33. lppr3a lppr3a 1294 1.549 - 0.728 - 0.821 - - - - -
34. bcl2_1 bcl2_1 1185 1.543 - - - 0.760 - 0.783 - - -
35. safb ENSDARG00000020467 5608 1.54 - - - - - 0.825 - - 0.715 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
36. txnl1 ENSDARG00000011921 692 1.537 - - - 0.708 - 0.829 - - - thioredoxin-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-701]
37. dhx9 ENSDARG00000079725 1241 1.531 - - - 0.800 - - - - 0.731 DEAH (Asp-Glu-Ala-His) box helicase 9 [Source:ZFIN;Acc:ZDB-GENE-070912-171]
38. ttk ENSDARG00000041361 3911 1.525 - - - 0.765 - 0.760 - - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
39. KPNA6 ENSDARG00000044980 543 1.523 - - - 0.716 - 0.807 - - - karyopherin alpha 6 (importin alpha 7) [Source:ZFIN;Acc:ZDB-GENE-130530-626]
40. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.519 - - - 0.796 - - - - 0.723 structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
41. crk ENSDARG00000055635, ENSDARG00000109497, ENSDARG00000115801 5105 1.518 - - - 0.738 - 0.780 - - - v-crk avian sarcoma virus CT10 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040801-148]
42. stx6 ENSDARG00000042742, ENSDARG00000115635 1208 1.515 - - - 0.782 - - - - 0.733 syntaxin 6 [Source:ZFIN;Acc:ZDB-GENE-030131-858]
43. chtopa ENSDARG00000057234 3287 1.507 - 0.740 - - - 0.767 - - - chromatin target of PRMT1a [Source:ZFIN;Acc:ZDB-GENE-030131-210]
44. prkcbp1l ENSDARG00000011932 2714 1.499 - - - 0.773 - - - 0.726 - protein kinase C binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2199]
45. ppig ENSDARG00000044431 3427 1.495 - - - 0.769 - 0.726 - - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
46. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.492 - - - 0.766 - - - - 0.726 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
47. ZNF281 ZNF281 1946 1.49 - - - 0.739 - 0.751 - - -
48. LDLRAD4 LDLRAD4 1237 1.487 - - - 0.763 - - - - 0.724
49. ppp1r13bb ENSDARG00000009142 1175 1.487 0.734 - - - - 0.753 - - - protein phosphatase 1, regulatory subunit 13Bb [Source:ZFIN;Acc:ZDB-GENE-030131-4327]
50. G3BP2_1 G3BP2_1 2390 1.486 - - - 0.764 - 0.722 - - -
51. GPRC5B GPRC5B 897 1.483 - 0.738 - - - 0.745 - - -
52. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.478 - - - 0.750 - - - - 0.728 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
53. ldb1a ENSDARG00000010137 3035 1.474 - - - 0.749 - - - - 0.725 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
54. srpk3 ENSDARG00000005916 1546 1.474 - 0.709 - - - 0.765 - - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
55. CABZ01085858.1 CABZ01085858.1 355 1.471 - 0.747 - 0.724 - - - - -
56. efnb1 ENSDARG00000007723, ENSDARG00000116351 1595 1.47 - 0.725 - - - 0.745 - - - ephrin-B1 [Source:ZFIN;Acc:ZDB-GENE-010618-2]
57. rhogc ENSDARG00000028401 2671 1.468 0.702 - - 0.766 - - - - - ras homolog gene family, member Gc [Source:ZFIN;Acc:ZDB-GENE-030131-3402]
58. eif2s1a ENSDARG00000005827 5992 1.464 - - - - - 0.726 - - 0.738 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
59. ccnk ENSDARG00000034146 1255 1.458 - - - 0.704 - 0.754 - - - cyclin K [Source:ZFIN;Acc:ZDB-GENE-030131-5126]
60. gpr98 gpr98 717 1.453 - - - 0.720 - - - - 0.733
61. zgc:158343 ENSDARG00000099411, ENSDARG00000110524, ENSDARG00000110558, ENSDARG00000112808 1061 1.445 0.718 - - 0.727 - - - - - zgc:158343 [Source:ZFIN;Acc:ZDB-GENE-061201-9]
62. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.44 - - - - - - - 0.704 0.736 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
63. ZC3H4 ENSDARG00000078355 1888 1.409 - - - 0.709 - - - 0.700 - zinc finger CCCH-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-100330-1]
64. CR847934.1 CR847934.1 2658 1 - - - - - - 1.000 - -
65. TSG101 TSG101 1686 1 - - - - - - 1.000 - -
66. pdlim5b ENSDARG00000027600 4252 1 - - - - - - 1.000 - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
67. CR388095.3 CR388095.3 2548 1 - - - - - - 1.000 - -
68. plagl2 ENSDARG00000076657 2057 1 - - - - - - 1.000 - - pleiomorphic adenoma gene-like 2 [Source:ZFIN;Acc:ZDB-GENE-020806-1]
69. rfxap ENSDARG00000076891 1299 1 - - - - - - 1.000 - - regulatory factor X-associated protein [Source:ZFIN;Acc:ZDB-GENE-091204-321]
70. slc4a2b ENSDARG00000052330 1900 1 - - - - - - 1.000 - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
71. gcn1l1 gcn1l1 6031 1 - - - - - - 1.000 - -
72. FAT1 FAT1 689 1 - - - - - - 1.000 - -
73. pinx1 ENSDARG00000023532 4452 1 - - - - - - 1.000 - - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
74. cenpf ENSDARG00000055133 5267 1 - - - - - - 1.000 - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
75. thumpd3 ENSDARG00000059634, ENSDARG00000113066 7065 1 - - - - - - 1.000 - - THUMP domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9745]
76. CCNA2 ENSDARG00000011094 3996 1 - - - - - - 1.000 - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
77. si:dkey-184p9.7 ENSDARG00000092726 2679 1 - - - - - - 1.000 - - si:dkey-184p9.7 [Source:ZFIN;Acc:ZDB-GENE-091204-97]
78. cx44.1 cx44.1 799 1 - - - - - - 1.000 - -
79. slc7a4 ENSDARG00000068286 1693 1 - - - - - - 1.000 - - solute carrier family 7, member 4 [Source:ZFIN;Acc:ZDB-GENE-030919-2]
80. PREX2 ENSDARG00000071692 827 1 - - - - - - 1.000 - - phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 [Source:ZFIN;Acc:ZDB-GENE-091113-37]
81. lepre1 lepre1 5346 1 - - - - - - 1.000 - -
82. rnd3a ENSDARG00000076799 4705 1 - - - - - - 1.000 - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
83. hoxc10a ENSDARG00000070348 2323 1 - - - - - - 1.000 - - homeobox C10a [Source:ZFIN;Acc:ZDB-GENE-990415-110]
84. tmco1 ENSDARG00000069099, ENSDARG00000113013 4698 1 - - - - - - 1.000 - - transmembrane and coiled-coil domains 1 [Source:ZFIN;Acc:ZDB-GENE-050417-344]
85. NDUFB2 ENSDARG00000045490 9141 1 - - - - - - 1.000 - - NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
86. LMLN ENSDARG00000061265 1618 1 - - - - - - 1.000 - - leishmanolysin-like (metallopeptidase M8 family) [Source:ZFIN;Acc:ZDB-GENE-081104-298]
87. pcif1 ENSDARG00000099084 2851 1 - - - - - - 1.000 - - PDX1 C-terminal inhibiting factor 1 [Source:ZFIN;Acc:ZDB-GENE-120920-2]
88. rtf1 ENSDARG00000008947 6596 0.999 - - - - - - 0.999 - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
89. wwp2 ENSDARG00000061345 3459 0.999 - - - - - - 0.999 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-000607-82]
90. alcamb ENSDARG00000058538 5672 0.999 - - - - - - 0.999 - - activated leukocyte cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-030131-1768]
91. lhfpl2b_1 ENSDARG00000098153 1596 0.999 - - - - - - 0.999 - - LHFPL tetraspan subfamily member 2b [Source:ZFIN;Acc:ZDB-GENE-050417-10]
92. atp6ap1b ENSDARG00000037153 3970 0.999 - - - - - - 0.999 - - ATPase H+ transporting accessory protein 1b [Source:ZFIN;Acc:ZDB-GENE-020423-2]
93. hbbe2 ENSDARG00000045143, ENSDARG00000109554 5244 0.999 - - - - - - 0.999 - - hemoglobin beta embryonic-2 [Source:ZFIN;Acc:ZDB-GENE-040702-1]
94. dct ENSDARG00000006008 2466 0.999 - - - - - - 0.999 - - dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-000508-1]
95. aldh7a1 ENSDARG00000018426 4637 0.998 - - - - - - 0.998 - - aldehyde dehydrogenase 7 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-6129]
96. si:ch211-51e12.7 ENSDARG00000045914 9598 0.998 - - - - - - 0.998 - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
97. ABHD12B ABHD12B 1877 0.998 - - - - - - 0.998 - -
98. jagn1b ENSDARG00000014995 2063 0.997 - - - - - - 0.997 - - jagunal homolog 1b [Source:ZFIN;Acc:ZDB-GENE-040801-103]
99. si:ch211-32p8.1 si:ch211-32p8.1 3402 0.997 - - - - - - 0.997 - -
100. lfng ENSDARG00000037879 11783 0.997 - - - - - - 0.997 - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]

There are 1371 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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