Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rfx3

Gene Name Gene ID Reads Annotation
rfx3 ENSDARG00000014550 2 regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]










Genes with expression patterns similar to rfx3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfx3 ENSDARG00000014550 2 3 - - 1.000 1.000 1.000 - - - - regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]
2. si:dkey-276l13.5 si:dkey-276l13.5 3 1.941 - - - 0.941 1.000 - - - -
3. ATP9A ENSDARG00000115869 9 1.699 - - 0.791 - 0.908 - - - - ATPase phospholipid transporting 9A (putative) [Source:HGNC Symbol;Acc:HGNC:13540]
4. si:ch211-212n6.18 si:ch211-212n6.18 233 1.54 - - 0.817 - 0.723 - - - -
5. si:ch73-116o1.3 si:ch73-116o1.3 1 1 - - - - 1.000 - - - -
6. si:dkey-233h12.3 si:dkey-233h12.3 4 1 - - - 1.000 - - - - -
7. MFN1 ENSDARG00000011884 1 1 - - - - 1.000 - - - - mitofusin 1 [Source:HGNC Symbol;Acc:HGNC:18262]
8. cart2 ENSDARG00000045832, ENSDARG00000112535 13 1 - - - - 1.000 - - - - cocaine- and amphetamine-regulated transcript 2 [Source:ZFIN;Acc:ZDB-GENE-050417-23]
9. cd44a ENSDARG00000087863 4 1 - - - - 1.000 - - - - CD44 molecule (Indian blood group) a [Source:ZFIN;Acc:ZDB-GENE-110429-1]
10. ENDOD1_6 ENDOD1_6 2 1 - - - - 1.000 - - - -
11. C2 C2 5 1 - - - 1.000 - - - - -
12. MFAP4_3 MFAP4_3 7 1 - - - - 1.000 - - - -
13. mir125a-1 2 1 - - - - 1.000 - - - - microRNA 125a-1
14. zeb2b ENSDARG00000078416 23 1 - - - - 1.000 - - - - zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
15. socs4 ENSDARG00000078509 0 1 - - - - 1.000 - - - - suppressor of cytokine signaling 4 [Source:ZFIN;Acc:ZDB-GENE-070720-4]
16. ttc39a ENSDARG00000074126 7 1 - - - - 1.000 - - - - tetratricopeptide repeat domain 39A [Source:ZFIN;Acc:ZDB-GENE-091116-42]
17. BX569789.5 BX569789.5 0 1 - - - - 1.000 - - - -
18. si:dkey-13i19.10 si:dkey-13i19.10 2 1 - - - - 1.000 - - - -
19. mirlet7b 0 1 - - - - 1.000 - - - - microRNA let7b
20. TMEM81 TMEM81 0 1 - - - - 1.000 - - - -
21. tk1 ENSDARG00000102245 1 1 - - - - 1.000 - - - - thymidine kinase 1, soluble [Source:ZFIN;Acc:ZDB-GENE-030131-5801]
22. CABZ01088134.1 ENSDARG00000033587 4 1 - - - - 1.000 - - - - enoyl-[acyl-carrier-protein] reductase, mitochondrial-like [Source:NCBI gene;Acc:101884755]
23. CABZ01102230.1 CABZ01102230.1 1 1 - - - - 1.000 - - - -
24. CR848836.1 ENSDARG00000097508 1 1 - - - - 1.000 - - - -
25. hesx1 ENSDARG00000060734 2 1 - - - - 1.000 - - - - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
26. MOB2 MOB2 4 1 - - - - 1.000 - - - -
27. si:ch73-60g14.2 si:ch73-60g14.2 1 1 - - - - 1.000 - - - -
28. si:ch211-3o3.7 si:ch211-3o3.7 0 1 - - - - 1.000 - - - -
29. fbxl8 ENSDARG00000054222 3 1 - - - - 1.000 - - - - F-box and leucine-rich repeat protein 8 [Source:ZFIN;Acc:ZDB-GENE-051120-81]
30. Metazoa_SRP_3 Metazoa_SRP_3 0 1 - - - - 1.000 - - - -
31. si:dkey-26g8.12 si:dkey-26g8.12 3 1 - - - - 1.000 - - - -
32. si:ch211-1f22.4 si:ch211-1f22.4 2 1 - - - - 1.000 - - - -
33. si:dkey-231l1.12 si:dkey-231l1.12 0 1 - - - - 1.000 - - - -
34. ZNF70_12 ZNF70_12 0 1 - - - - 1.000 - - - -
35. si:ch211-67f13.7 ENSDARG00000077845 8 1 - - - 1.000 - - - - - si:ch211-67f13.7 [Source:ZFIN;Acc:ZDB-GENE-090313-126]
36. si:dkey-208k22.2 si:dkey-208k22.2 9 1 - - - - 1.000 - - - -
37. gabrr1 ENSDARG00000043902 1 1 - - - 1.000 - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
38. CABZ01076801.1 CABZ01076801.1 3 1 - - - - 1.000 - - - -
39. dcst2 ENSDARG00000088693 1 1 - - - - 1.000 - - - - DC-STAMP domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070809-6]
40. F13A1 F13A1 1 1 - - - - 1.000 - - - -
41. si:ch211-133d10.1 si:ch211-133d10.1 0 1 - - - - 1.000 - - - -
42. TMEM55B TMEM55B 76 1 - - - 1.000 - - - - -
43. ODF2 ODF2 6 1 - - - - 1.000 - - - -
44. si:dkeyp-20g2.3 ENSDARG00000093389, ENSDARG00000094279 1 1 - - - - 1.000 - - - - si:dkeyp-20g2.3 [Source:ZFIN;Acc:ZDB-GENE-070705-537]
45. si:dkey-222f8.6 si:dkey-222f8.6 7 1 - - - - 1.000 - - - -
46. BX005421.4 BX005421.4 11 1 - - - - 1.000 - - - -
47. clrn1 ENSDARG00000102890 5 1 - - - 1.000 - - - - - clarin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-420]
48. si:ch73-141f17.1 si:ch73-141f17.1 1 1 - - - - 1.000 - - - -
49. U1_3 U1_3 1 1 - - - 1.000 - - - - -
50. loxl4 ENSDARG00000025089 5 1 - - - - 1.000 - - - - lysyl oxidase-like 4 [Source:ZFIN;Acc:ZDB-GENE-080722-19]
51. GRIK5 ENSDARG00000101449, ENSDARG00000111384 43 1 - - - - 1.000 - - - - glutamate receptor, ionotropic, kainate 5 [Source:ZFIN;Acc:ZDB-GENE-070821-6]
52. inpp5k inpp5k 2 1 - - - - 1.000 - - - -
53. crygs1 ENSDARG00000042992 45 1 - - - - 1.000 - - - - crystallin, gamma S1 [Source:ZFIN;Acc:ZDB-GENE-050223-4]
54. PIK3R6_1 PIK3R6_1 1 1 - - - - 1.000 - - - -
55. CABZ01011032.1 CABZ01011032.1 1 1 - - - - 1.000 - - - -
56. tmem184b tmem184b 2 1 - - - - 1.000 - - - -
57. ftr12 ENSDARG00000053366, ENSDARG00000074118, ENSDARG00000113522 0 1 - - - - 1.000 - - - - finTRIM family, member 12 [Source:ZFIN;Acc:ZDB-GENE-070912-196]
58. cacng3a ENSDARG00000058460 2 1 - - - - 1.000 - - - - calcium channel, voltage-dependent, gamma subunit 3a [Source:ZFIN;Acc:ZDB-GENE-090312-124]
59. si:ch211-206i14.2 si:ch211-206i14.2 3 1 - - - - 1.000 - - - -
60. slc26a4 ENSDARG00000069431 2 1 - - - - 1.000 - - - - solute carrier family 26 (anion exchanger), member 4 [Source:ZFIN;Acc:ZDB-GENE-060503-544]
61. si:ch211-147m20.1 si:ch211-147m20.1 6 1 - - - 1.000 - - - - -
62. si:dkey-9i5.1 si:dkey-9i5.1 36 1 - - - - 1.000 - - - -
63. SLC2A11 SLC2A11 5 1 - - - - 1.000 - - - -
64. AL928852.1 AL928852.1 23 1 - - - 1.000 - - - - -
65. wibg wibg 2 1 - - - - 1.000 - - - -
66. si:dkey-57a22.12 si:dkey-57a22.12 23 1 - - - - 1.000 - - - -
67. si:dkey-179k24.3 si:dkey-179k24.3 3 1 - - - - 1.000 - - - -
68. si:dkey-25o1.5 si:dkey-25o1.5 5 1 - - - 1.000 - - - - -
69. creb5b ENSDARG00000070536 9 1 - - - - 1.000 - - - - cAMP responsive element binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-091020-6]
70. si:dkey-9c18.1 si:dkey-9c18.1 3 1 - - - - 1.000 - - - -
71. ido1 ENSDARG00000033594 0 1 - - - - 1.000 - - - - indoleamine 2,3-dioxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-080228-2]
72. si:dkey-226m8.9 si:dkey-226m8.9 4 1 - - - - 1.000 - - - -
73. si:dkey-240n22.3 ENSDARG00000095013 0 1 - - - - 1.000 - - - - si:dkey-240n22.3 [Source:ZFIN;Acc:ZDB-GENE-070705-409]
74. 5S_rRNA_5 5S_rRNA_5 1 1 - - - - 1.000 - - - -
75. GABRR3 GABRR3 3 1 - - - - 1.000 - - - -
76. CU570981.1 CU570981.1 9 1 - - - - 1.000 - - - -
77. taar14l ENSDARG00000069213 11 1 - - - - 1.000 - - - - trace amine associated receptor 14l [Source:ZFIN;Acc:ZDB-GENE-041014-31]
78. nlgn4b 1 1 - - - - 1.000 - - - - neuroligin 4b, transcript variant X1
79. si:ch211-69k21.3 si:ch211-69k21.3 3 1 - - - - 1.000 - - - -
80. sh2d1ab ENSDARG00000074854, ENSDARG00000115149 0 1 - - - - 1.000 - - - - SH2 domain containing 1A duplicate b [Source:ZFIN;Acc:ZDB-GENE-091204-326]
81. si:dkey-250k10.3 si:dkey-250k10.3 2 1 - - - - 1.000 - - - -
82. SSTR2 SSTR2 12 1 - - - - 1.000 - - - -
83. U1_18 U1_18 0 1 - - - - 1.000 - - - -
84. CR391962.2 CR391962.2 0 1 - - - - 1.000 - - - -
85. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 1 - - - 1.000 - - - - - carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
86. si:ch1073-351l9.1 si:ch1073-351l9.1 1 1 - - - - 1.000 - - - -
87. si:dkey-108f8.6 si:dkey-108f8.6 0 1 - - - - 1.000 - - - -
88. si:ch73-335d12.1 si:ch73-335d12.1 1 1 - - - - 1.000 - - - -
89. KCNMB3 KCNMB3 5 1 - - - - 1.000 - - - -
90. lgals3bpa ENSDARG00000037805 2 1 - - - - 1.000 - - - - lectin, galactoside-binding, soluble, 3 binding protein a [Source:ZFIN;Acc:ZDB-GENE-060331-57]
91. CU469547.1 CU469547.1 0 1 - - - - 1.000 - - - -
92. abcd1 ENSDARG00000074876 6 1 - - - - 1.000 - - - - ATP-binding cassette, sub-family D (ALD), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-27]
93. si:ch211-198c19.3 ENSDARG00000095533 5 1 - - - - 1.000 - - - - si:ch211-198c19.3 [Source:ZFIN;Acc:ZDB-GENE-100922-226]
94. si:dkey-222o15.4 si:dkey-222o15.4 4 1 - - - - 1.000 - - - -
95. soga3a ENSDARG00000063311, ENSDARG00000088571, ENSDARG00000097245 11 1 - - - - 1.000 - - - - SOGA family member 3a [Source:ZFIN;Acc:ZDB-GENE-100921-84]
96. BX000442.2 BX000442.2 8 1 - - - - 1.000 - - - -
97. pex5la ENSDARG00000022518, ENSDARG00000109971, ENSDARG00000110029, ENSDARG00000112628 28 1 - - - - 1.000 - - - - peroxisomal biogenesis factor 5-like a [Source:ZFIN;Acc:ZDB-GENE-070705-298]
98. zgc:162872 ENSDARG00000012184 1 1 - - - - 1.000 - - - - zgc:162872 [Source:ZFIN;Acc:ZDB-GENE-081022-1]
99. 5S_rRNA_29 5S_rRNA_29 0 1 - - - - 1.000 - - - -
100. SYNPO 2 1 - - - - 1.000 - - - - synaptopodin, transcript variant X2

There are 289 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA