Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rfx3

Gene Name Gene ID Reads Annotation
rfx3 ENSDARG00000014550 2 regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]










Genes with expression patterns similar to rfx3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfx3 ENSDARG00000014550 2 3 - - 1.000 1.000 1.000 - - - - regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]
2. si:dkey-276l13.5 si:dkey-276l13.5 3 1.941 - - - 0.941 1.000 - - - -
3. ATP9A ENSDARG00000115869 9 1.699 - - 0.791 - 0.908 - - - - ATPase phospholipid transporting 9A (putative) [Source:HGNC Symbol;Acc:HGNC:13540]
4. si:ch211-212n6.18 si:ch211-212n6.18 233 1.54 - - 0.817 - 0.723 - - - -
5. MOB2 MOB2 4 1 - - - - 1.000 - - - -
6. U1_15 U1_15 1 1 - - - - 1.000 - - - -
7. C2 C2 5 1 - - - 1.000 - - - - -
8. si:dkey-96n2.2 si:dkey-96n2.2 0 1 - - - - 1.000 - - - -
9. gnb3a ENSDARG00000004358, ENSDARG00000113470 11 1 - - - - 1.000 - - - - guanine nucleotide binding protein (G protein), beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040718-134]
10. AL928852.1 AL928852.1 23 1 - - - 1.000 - - - - -
11. CDH19 2 1 - - - - 1.000 - - - - cadherin 19, type 2, transcript variant X3
12. hesx1 ENSDARG00000060734 2 1 - - - - 1.000 - - - - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
13. cdcp2 ENSDARG00000075866 0 1 - - - - 1.000 - - - - CUB domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-485]
14. F13A1 F13A1 1 1 - - - - 1.000 - - - -
15. nsmfb ENSDARG00000101234 4 1 - - - - 1.000 - - - - NMDA receptor synaptonuclear signaling and neuronal migration factor b [Source:ZFIN;Acc:ZDB-GENE-080603-4]
16. MFAP4_3 MFAP4_3 7 1 - - - - 1.000 - - - -
17. si:ch73-116o1.3 si:ch73-116o1.3 1 1 - - - - 1.000 - - - -
18. BX000442.2 BX000442.2 8 1 - - - - 1.000 - - - -
19. CU570981.1 CU570981.1 9 1 - - - - 1.000 - - - -
20. si:ch211-147m20.1 si:ch211-147m20.1 6 1 - - - 1.000 - - - - -
21. TRPC7 TRPC7 1 1 - - - - 1.000 - - - -
22. mlxip ENSDARG00000059474 12 1 - - - - 1.000 - - - - MLX interacting protein [Source:ZFIN;Acc:ZDB-GENE-060526-8]
23. TMEM55B TMEM55B 76 1 - - - 1.000 - - - - -
24. SSTR2 SSTR2 12 1 - - - - 1.000 - - - -
25. FAM175B FAM175B 23 1 - - - - 1.000 - - - -
26. si:dkey-30h14.3 si:dkey-30h14.3 1 1 - - - 1.000 - - - - -
27. si:dkey-222f8.6 si:dkey-222f8.6 7 1 - - - - 1.000 - - - -
28. si:dkey-57a22.12 si:dkey-57a22.12 23 1 - - - - 1.000 - - - -
29. si:dkey-108f8.6 si:dkey-108f8.6 0 1 - - - - 1.000 - - - -
30. BX005421.4 BX005421.4 11 1 - - - - 1.000 - - - -
31. U1_3 U1_3 1 1 - - - 1.000 - - - - -
32. CT583625.1 ENSDARG00000093788 10 1 - - - - 1.000 - - - -
33. si:ch211-67f13.7 ENSDARG00000077845 8 1 - - - 1.000 - - - - - si:ch211-67f13.7 [Source:ZFIN;Acc:ZDB-GENE-090313-126]
34. si:ch211-133d10.1 si:ch211-133d10.1 0 1 - - - - 1.000 - - - -
35. ENDOD1_6 ENDOD1_6 2 1 - - - - 1.000 - - - -
36. si:ch73-141f17.1 si:ch73-141f17.1 1 1 - - - - 1.000 - - - -
37. si:dkey-231l1.12 si:dkey-231l1.12 0 1 - - - - 1.000 - - - -
38. U8 U8 11 1 - - - - 1.000 - - - -
39. soga3a ENSDARG00000063311, ENSDARG00000088571, ENSDARG00000097245 11 1 - - - - 1.000 - - - - SOGA family member 3a [Source:ZFIN;Acc:ZDB-GENE-100921-84]
40. ftr12 ENSDARG00000053366, ENSDARG00000074118, ENSDARG00000113522 0 1 - - - - 1.000 - - - - finTRIM family, member 12 [Source:ZFIN;Acc:ZDB-GENE-070912-196]
41. 5S_rRNA_5 5S_rRNA_5 1 1 - - - - 1.000 - - - -
42. KCNMB3 KCNMB3 5 1 - - - - 1.000 - - - -
43. si:dkey-9c18.1 si:dkey-9c18.1 3 1 - - - - 1.000 - - - -
44. CU469547.1 CU469547.1 0 1 - - - - 1.000 - - - -
45. fbxl8 ENSDARG00000054222 3 1 - - - - 1.000 - - - - F-box and leucine-rich repeat protein 8 [Source:ZFIN;Acc:ZDB-GENE-051120-81]
46. PIK3R6_1 PIK3R6_1 1 1 - - - - 1.000 - - - -
47. si:dkey-226m8.9 si:dkey-226m8.9 4 1 - - - - 1.000 - - - -
48. zgc:103559 ENSDARG00000038293 1 1 - - - - 1.000 - - - - zgc:103559 [Source:ZFIN;Acc:ZDB-GENE-041212-22]
49. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 1 - - - 1.000 - - - - - carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
50. UNC80 ENSDARG00000098290 2 1 - - - - 1.000 - - - - unc-80 homolog (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-140106-167]
51. SYNPO 2 1 - - - - 1.000 - - - - synaptopodin, transcript variant X2
52. dhh ENSDARG00000037062 3 1 - - - 1.000 - - - - - desert hedgehog [Source:ZFIN;Acc:ZDB-GENE-990714-5]
53. wdr27 ENSDARG00000053386 2 1 - - - - 1.000 - - - - WD repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-051120-93]
54. CABZ01102230.1 CABZ01102230.1 1 1 - - - - 1.000 - - - -
55. si:dkey-208k22.2 si:dkey-208k22.2 9 1 - - - - 1.000 - - - -
56. si:dkey-233h12.3 si:dkey-233h12.3 4 1 - - - 1.000 - - - - -
57. si:ch73-60g14.2 si:ch73-60g14.2 1 1 - - - - 1.000 - - - -
58. wibg wibg 2 1 - - - - 1.000 - - - -
59. tmem184b tmem184b 2 1 - - - - 1.000 - - - -
60. si:dkey-57c22.1 ENSDARG00000093846 12 1 - - - - 1.000 - - - - si:dkey-57c22.1 [Source:ZFIN;Acc:ZDB-GENE-110914-164]
61. pex5la ENSDARG00000022518, ENSDARG00000109971, ENSDARG00000110029, ENSDARG00000112628 28 1 - - - - 1.000 - - - - peroxisomal biogenesis factor 5-like a [Source:ZFIN;Acc:ZDB-GENE-070705-298]
62. cart2 ENSDARG00000045832, ENSDARG00000112535 13 1 - - - - 1.000 - - - - cocaine- and amphetamine-regulated transcript 2 [Source:ZFIN;Acc:ZDB-GENE-050417-23]
63. si:dkey-26g8.12 si:dkey-26g8.12 3 1 - - - - 1.000 - - - -
64. slc8a2a ENSDARG00000008912, ENSDARG00000116797 12 1 - - - - 1.000 - - - - solute carrier family 8 (sodium/calcium exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-060531-155]
65. si:ch73-289h5.3 si:ch73-289h5.3 9 1 - - - - 1.000 - - - -
66. BIN1 BIN1 11 1 - - - - 1.000 - - - -
67. sftpbb ENSDARG00000067566 13 1 - - - - 1.000 - - - - surfactant protein Bb [Source:ZFIN;Acc:ZDB-GENE-060526-155]
68. dcst2 ENSDARG00000088693 1 1 - - - - 1.000 - - - - DC-STAMP domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070809-6]
69. TMEM81 TMEM81 0 1 - - - - 1.000 - - - -
70. trim35-38 trim35-38 3 1 - - - - 1.000 - - - -
71. 5S_rRNA_29 5S_rRNA_29 0 1 - - - - 1.000 - - - -
72. si:dkey-240n22.3 ENSDARG00000095013 0 1 - - - - 1.000 - - - - si:dkey-240n22.3 [Source:ZFIN;Acc:ZDB-GENE-070705-409]
73. nlgn4b 1 1 - - - - 1.000 - - - - neuroligin 4b, transcript variant X1
74. abcd1 ENSDARG00000074876 6 1 - - - - 1.000 - - - - ATP-binding cassette, sub-family D (ALD), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-27]
75. taar14l ENSDARG00000069213 11 1 - - - - 1.000 - - - - trace amine associated receptor 14l [Source:ZFIN;Acc:ZDB-GENE-041014-31]
76. si:ch73-335d12.1 si:ch73-335d12.1 1 1 - - - - 1.000 - - - -
77. BX569789.5 BX569789.5 0 1 - - - - 1.000 - - - -
78. lgals3bpa ENSDARG00000037805 2 1 - - - - 1.000 - - - - lectin, galactoside-binding, soluble, 3 binding protein a [Source:ZFIN;Acc:ZDB-GENE-060331-57]
79. ido1 ENSDARG00000033594 0 1 - - - - 1.000 - - - - indoleamine 2,3-dioxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-080228-2]
80. si:ch211-1f22.4 si:ch211-1f22.4 2 1 - - - - 1.000 - - - -
81. si:dkey-9i5.1 si:dkey-9i5.1 36 1 - - - - 1.000 - - - -
82. loxl4 ENSDARG00000025089 5 1 - - - - 1.000 - - - - lysyl oxidase-like 4 [Source:ZFIN;Acc:ZDB-GENE-080722-19]
83. mir125a-1 2 1 - - - - 1.000 - - - - microRNA 125a-1
84. mirlet7b 0 1 - - - - 1.000 - - - - microRNA let7b
85. si:dkey-250k10.3 si:dkey-250k10.3 2 1 - - - - 1.000 - - - -
86. si:ch211-3o3.7 si:ch211-3o3.7 0 1 - - - - 1.000 - - - -
87. CR391962.2 CR391962.2 0 1 - - - - 1.000 - - - -
88. U1_18 U1_18 0 1 - - - - 1.000 - - - -
89. CABZ01011032.1 CABZ01011032.1 1 1 - - - - 1.000 - - - -
90. si:dkey-13i19.10 si:dkey-13i19.10 2 1 - - - - 1.000 - - - -
91. si:dkey-70p6.1 ENSDARG00000092039, ENSDARG00000114631 19 1 - - - - 1.000 - - - - si:dkey-70p6.1 [Source:ZFIN;Acc:ZDB-GENE-040724-140]
92. SNORA42 SNORA42 24 1 - - - - 1.000 - - - -
93. ubald1a ENSDARG00000002362 181 1 - - - 1.000 - - - - - UBA-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040718-191]
94. si:dkey-25o1.5 si:dkey-25o1.5 5 1 - - - 1.000 - - - - -
95. si:dkey-27p18.6 4 1 - - - - 1.000 - - - - si:dkey-27p18.6, transcript variant X1
96. GABRR3 GABRR3 3 1 - - - - 1.000 - - - -
97. SMCHD1 ENSDARG00000104374 2 1 - - - - 1.000 - - - - structural maintenance of chromosomes flexible hinge domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050211-6]
98. cdkn1bb_1 ENSDARG00000054271 5 1 - - - 1.000 - - - - - cyclin-dependent kinase inhibitor 1Bb [Source:ZFIN;Acc:ZDB-GENE-030521-13]
99. slc18b1 ENSDARG00000044047 7 1 - - - - 1.000 - - - - solute carrier family 18, subfamily B, member 1 [Source:ZFIN;Acc:ZDB-GENE-050417-386]
100. sh2d1ab ENSDARG00000074854, ENSDARG00000115149 0 1 - - - - 1.000 - - - - SH2 domain containing 1A duplicate b [Source:ZFIN;Acc:ZDB-GENE-091204-326]

There are 289 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA