Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rfx3

Gene Name Gene ID Reads Annotation
rfx3 ENSDARG00000014550 2 regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]










Genes with expression patterns similar to rfx3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfx3 ENSDARG00000014550 2 3 - - 1.000 1.000 1.000 - - - - regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]
2. si:dkey-276l13.5 si:dkey-276l13.5 3 1.941 - - - 0.941 1.000 - - - -
3. ATP9A ENSDARG00000115869 9 1.699 - - 0.791 - 0.908 - - - - ATPase phospholipid transporting 9A (putative) [Source:HGNC Symbol;Acc:HGNC:13540]
4. si:ch211-212n6.18 si:ch211-212n6.18 233 1.54 - - 0.817 - 0.723 - - - -
5. il7r ENSDARG00000078970 4 1 - - - - 1.000 - - - - interleukin 7 receptor [Source:ZFIN;Acc:ZDB-GENE-080110-7]
6. FAM175B FAM175B 23 1 - - - - 1.000 - - - -
7. CABZ01088982.1 ENSDARG00000109259 0 1 - - - - 1.000 - - - -
8. cdcp2 ENSDARG00000075866 0 1 - - - - 1.000 - - - - CUB domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-485]
9. popdc2 ENSDARG00000069922, ENSDARG00000109930 5 1 - - - - 1.000 - - - - popeye domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060518-2]
10. SYNPO 2 1 - - - - 1.000 - - - - synaptopodin, transcript variant X2
11. 5S_rRNA_29 5S_rRNA_29 0 1 - - - - 1.000 - - - -
12. pex5la ENSDARG00000022518, ENSDARG00000109971, ENSDARG00000110029, ENSDARG00000112628 28 1 - - - - 1.000 - - - - peroxisomal biogenesis factor 5-like a [Source:ZFIN;Acc:ZDB-GENE-070705-298]
13. zgc:162872 ENSDARG00000012184 1 1 - - - - 1.000 - - - - zgc:162872 [Source:ZFIN;Acc:ZDB-GENE-081022-1]
14. soga3a ENSDARG00000063311, ENSDARG00000088571, ENSDARG00000097245 11 1 - - - - 1.000 - - - - SOGA family member 3a [Source:ZFIN;Acc:ZDB-GENE-100921-84]
15. BX000442.2 BX000442.2 8 1 - - - - 1.000 - - - -
16. CU469547.1 CU469547.1 0 1 - - - - 1.000 - - - -
17. abcd1 ENSDARG00000074876 6 1 - - - - 1.000 - - - - ATP-binding cassette, sub-family D (ALD), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-27]
18. si:dkey-222o15.4 si:dkey-222o15.4 4 1 - - - - 1.000 - - - -
19. si:ch211-198c19.3 ENSDARG00000095533 5 1 - - - - 1.000 - - - - si:ch211-198c19.3 [Source:ZFIN;Acc:ZDB-GENE-100922-226]
20. KCNMB3 KCNMB3 5 1 - - - - 1.000 - - - -
21. lgals3bpa ENSDARG00000037805 2 1 - - - - 1.000 - - - - lectin, galactoside-binding, soluble, 3 binding protein a [Source:ZFIN;Acc:ZDB-GENE-060331-57]
22. si:ch73-335d12.1 si:ch73-335d12.1 1 1 - - - - 1.000 - - - -
23. U1_18 U1_18 0 1 - - - - 1.000 - - - -
24. CR391962.2 CR391962.2 0 1 - - - - 1.000 - - - -
25. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 1 - - - 1.000 - - - - - carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
26. si:ch1073-351l9.1 si:ch1073-351l9.1 1 1 - - - - 1.000 - - - -
27. si:dkey-108f8.6 si:dkey-108f8.6 0 1 - - - - 1.000 - - - -
28. sh2d1ab ENSDARG00000074854, ENSDARG00000115149 0 1 - - - - 1.000 - - - - SH2 domain containing 1A duplicate b [Source:ZFIN;Acc:ZDB-GENE-091204-326]
29. si:dkey-250k10.3 si:dkey-250k10.3 2 1 - - - - 1.000 - - - -
30. SSTR2 SSTR2 12 1 - - - - 1.000 - - - -
31. taar14l ENSDARG00000069213 11 1 - - - - 1.000 - - - - trace amine associated receptor 14l [Source:ZFIN;Acc:ZDB-GENE-041014-31]
32. nlgn4b 1 1 - - - - 1.000 - - - - neuroligin 4b, transcript variant X1
33. si:ch211-69k21.3 si:ch211-69k21.3 3 1 - - - - 1.000 - - - -
34. GABRR3 GABRR3 3 1 - - - - 1.000 - - - -
35. CU570981.1 CU570981.1 9 1 - - - - 1.000 - - - -
36. si:dkey-226m8.9 si:dkey-226m8.9 4 1 - - - - 1.000 - - - -
37. si:dkey-240n22.3 ENSDARG00000095013 0 1 - - - - 1.000 - - - - si:dkey-240n22.3 [Source:ZFIN;Acc:ZDB-GENE-070705-409]
38. 5S_rRNA_5 5S_rRNA_5 1 1 - - - - 1.000 - - - -
39. si:dkey-9c18.1 si:dkey-9c18.1 3 1 - - - - 1.000 - - - -
40. ido1 ENSDARG00000033594 0 1 - - - - 1.000 - - - - indoleamine 2,3-dioxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-080228-2]
41. si:dkey-25o1.5 si:dkey-25o1.5 5 1 - - - 1.000 - - - - -
42. creb5b ENSDARG00000070536 9 1 - - - - 1.000 - - - - cAMP responsive element binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-091020-6]
43. TRPC7 TRPC7 1 1 - - - - 1.000 - - - -
44. SNORA42 SNORA42 24 1 - - - - 1.000 - - - -
45. CABZ01030262.1 CABZ01030262.1 11 1 - - - - 1.000 - - - -
46. CU469509.2 CU469509.2 4 1 - - - - 1.000 - - - -
47. UNC80 ENSDARG00000098290 2 1 - - - - 1.000 - - - - unc-80 homolog (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-140106-167]
48. slc18b1 ENSDARG00000044047 7 1 - - - - 1.000 - - - - solute carrier family 18, subfamily B, member 1 [Source:ZFIN;Acc:ZDB-GENE-050417-386]
49. si:dkey-14i17.1 si:dkey-14i17.1 1 1 - - - 1.000 - - - - -
50. cmpk2 ENSDARG00000031359 1 1 - - - - 1.000 - - - - cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040724-24]
51. cdkn1bb_1 ENSDARG00000054271 5 1 - - - 1.000 - - - - - cyclin-dependent kinase inhibitor 1Bb [Source:ZFIN;Acc:ZDB-GENE-030521-13]
52. slc8a2a ENSDARG00000008912, ENSDARG00000116797 12 1 - - - - 1.000 - - - - solute carrier family 8 (sodium/calcium exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-060531-155]
53. BIN1 BIN1 11 1 - - - - 1.000 - - - -
54. sat2a ENSDARG00000036430, ENSDARG00000115169 0 1 - - - - 1.000 - - - - spermidine/spermine N1-acetyltransferase family member 2a [Source:ZFIN;Acc:ZDB-GENE-041212-21]
55. aldoca ENSDARG00000057661, ENSDARG00000111344 1 1 - - - - 1.000 - - - - aldolase C, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-050706-128]
56. U1_15 U1_15 1 1 - - - - 1.000 - - - -
57. dhh ENSDARG00000037062 3 1 - - - 1.000 - - - - - desert hedgehog [Source:ZFIN;Acc:ZDB-GENE-990714-5]
58. OVGP1 ENSDARG00000075745 6 1 - - - - 1.000 - - - - oviductal glycoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-118]
59. gnb3a ENSDARG00000004358, ENSDARG00000113470 11 1 - - - - 1.000 - - - - guanine nucleotide binding protein (G protein), beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040718-134]
60. si:ch73-289h5.3 si:ch73-289h5.3 9 1 - - - - 1.000 - - - -
61. wdr27 ENSDARG00000053386 2 1 - - - - 1.000 - - - - WD repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-051120-93]
62. BX465848.1 ENSDARG00000114947 1 1 - - - - 1.000 - - - -
63. si:dkey-27p18.6 4 1 - - - - 1.000 - - - - si:dkey-27p18.6, transcript variant X1
64. ubald1a ENSDARG00000002362 181 1 - - - 1.000 - - - - - UBA-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040718-191]
65. si:dkey-96n2.2 si:dkey-96n2.2 0 1 - - - - 1.000 - - - -
66. si:dkey-70p6.1 ENSDARG00000092039, ENSDARG00000114631 19 1 - - - - 1.000 - - - - si:dkey-70p6.1 [Source:ZFIN;Acc:ZDB-GENE-040724-140]
67. BX663613.3 ENSDARG00000117521 1 1 - - - - 1.000 - - - -
68. BRPF1 ENSDARG00000103665 10 1 - - - - 1.000 - - - - bromodomain and PHD finger containing, 1 [Source:ZFIN;Acc:ZDB-GENE-040426-731]
69. U8 U8 11 1 - - - - 1.000 - - - -
70. SMCHD1 ENSDARG00000104374 2 1 - - - - 1.000 - - - - structural maintenance of chromosomes flexible hinge domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050211-6]
71. socs7 ENSDARG00000077018, ENSDARG00000114903, ENSDARG00000115097 7 1 - - - - 1.000 - - - - suppressor of cytokine signaling 7 [Source:ZFIN;Acc:ZDB-GENE-080204-125]
72. nsmfb ENSDARG00000101234 4 1 - - - - 1.000 - - - - NMDA receptor synaptonuclear signaling and neuronal migration factor b [Source:ZFIN;Acc:ZDB-GENE-080603-4]
73. si:dkey-57c22.1 ENSDARG00000093846 12 1 - - - - 1.000 - - - - si:dkey-57c22.1 [Source:ZFIN;Acc:ZDB-GENE-110914-164]
74. lrp1ba ENSDARG00000004789, ENSDARG00000094171 3 1 - - - - 1.000 - - - - low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
75. CST7 CST7 22 1 - - - - 1.000 - - - -
76. trim35-38 trim35-38 3 1 - - - - 1.000 - - - -
77. CT583625.1 ENSDARG00000093788 10 1 - - - - 1.000 - - - -
78. mlxip ENSDARG00000059474 12 1 - - - - 1.000 - - - - MLX interacting protein [Source:ZFIN;Acc:ZDB-GENE-060526-8]
79. zgc:103559 ENSDARG00000038293 1 1 - - - - 1.000 - - - - zgc:103559 [Source:ZFIN;Acc:ZDB-GENE-041212-22]
80. sftpbb ENSDARG00000067566 13 1 - - - - 1.000 - - - - surfactant protein Bb [Source:ZFIN;Acc:ZDB-GENE-060526-155]
81. CDH19 2 1 - - - - 1.000 - - - - cadherin 19, type 2, transcript variant X3
82. ddx41_1 2 1 - - - 1.000 - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
83. si:dkey-30h14.3 si:dkey-30h14.3 1 1 - - - 1.000 - - - - -
84. si:ch211-1f22.4 si:ch211-1f22.4 2 1 - - - - 1.000 - - - -
85. si:ch211-3o3.7 si:ch211-3o3.7 0 1 - - - - 1.000 - - - -
86. MOB2 MOB2 4 1 - - - - 1.000 - - - -
87. si:ch73-60g14.2 si:ch73-60g14.2 1 1 - - - - 1.000 - - - -
88. fbxl8 ENSDARG00000054222 3 1 - - - - 1.000 - - - - F-box and leucine-rich repeat protein 8 [Source:ZFIN;Acc:ZDB-GENE-051120-81]
89. Metazoa_SRP_3 Metazoa_SRP_3 0 1 - - - - 1.000 - - - -
90. si:dkey-26g8.12 si:dkey-26g8.12 3 1 - - - - 1.000 - - - -
91. hesx1 ENSDARG00000060734 2 1 - - - - 1.000 - - - - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
92. CABZ01102230.1 CABZ01102230.1 1 1 - - - - 1.000 - - - -
93. CR848836.1 ENSDARG00000097508 1 1 - - - - 1.000 - - - -
94. tk1 ENSDARG00000102245 1 1 - - - - 1.000 - - - - thymidine kinase 1, soluble [Source:ZFIN;Acc:ZDB-GENE-030131-5801]
95. CABZ01088134.1 ENSDARG00000033587 4 1 - - - - 1.000 - - - - enoyl-[acyl-carrier-protein] reductase, mitochondrial-like [Source:NCBI gene;Acc:101884755]
96. TMEM81 TMEM81 0 1 - - - - 1.000 - - - -
97. si:dkey-13i19.10 si:dkey-13i19.10 2 1 - - - - 1.000 - - - -
98. mirlet7b 0 1 - - - - 1.000 - - - - microRNA let7b
99. ttc39a ENSDARG00000074126 7 1 - - - - 1.000 - - - - tetratricopeptide repeat domain 39A [Source:ZFIN;Acc:ZDB-GENE-091116-42]
100. BX569789.5 BX569789.5 0 1 - - - - 1.000 - - - -

There are 289 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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