Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rfx1a

Gene Name Gene ID Reads Annotation
rfx1a ENSDARG00000005883 148 regulatory factor X, 1a (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-070424-94]










Genes with expression patterns similar to rfx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfx1a ENSDARG00000005883 148 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 regulatory factor X, 1a (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-070424-94]
2. fgf12a ENSDARG00000027957 143 2.392 0.881 0.746 - - - - 0.765 - - fibroblast growth factor 12a [Source:ZFIN;Acc:ZDB-GENE-050221-6]
3. P2RY1 ENSDARG00000105281 45 1.902 - 0.950 - - - - 0.952 - - purinergic receptor P2Y1 [Source:ZFIN;Acc:ZDB-GENE-121004-2]
4. dpysl4 ENSDARG00000103490 534 1.7 - 0.946 - - - - 0.754 - - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
5. dachd ENSDARG00000069440 271 1.674 - - - - - 0.704 0.970 - - dachshund d [Source:ZFIN;Acc:ZDB-GENE-070427-2]
6. chrna2b ENSDARG00000057025 217 1.658 - - - - - 0.842 0.816 - - cholinergic receptor, nicotinic, alpha 2b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-041001-99]
7. SPTBN4_1 ENSDARG00000092624 473 1.654 - 0.946 - - - 0.708 - - - spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
8. neto1l ENSDARG00000071596 57 1.654 - 0.950 - - - - 0.704 - - neuropilin (NRP) and tolloid (TLL)-like 1, like [Source:ZFIN;Acc:ZDB-GENE-091207-1]
9. im:7162084 im:7162084 665 1.613 - - - - - 0.863 0.750 - -
10. pax6b ENSDARG00000045936 349 1.613 - - - - - 0.746 0.867 - - paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
11. ugt2a5 ENSDARG00000011537, ENSDARG00000116508 56 1.597 0.783 - - - - 0.814 - - - UDP glucuronosyltransferase 2 family, polypeptide A5 [Source:ZFIN;Acc:ZDB-GENE-060929-796]
12. il1rapl1b ENSDARG00000104853 52 1.578 0.850 - - - - 0.728 - - - interleukin 1 receptor accessory protein-like 1b [Source:ZFIN;Acc:ZDB-GENE-090109-2]
13. cdh7 582 1.577 - - - - - 0.831 0.746 - - cadherin 7, type 2, transcript variant X1
14. si:ch211-10a23.2 ENSDARG00000060656 471 1.572 - - - - - 0.774 0.798 - - si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
15. zgc:55764 zgc:55764 645 1.56 0.702 - - - - 0.858 - - -
16. xpr1 xpr1 840 1.55 - 0.834 - - - - 0.716 - -
17. ptprua ENSDARG00000092638 479 1.525 - - - - - - 0.762 0.763 - protein tyrosine phosphatase, receptor type, U, a [Source:ZFIN;Acc:ZDB-GENE-060503-232]
18. spred3 ENSDARG00000040358 134 1.515 0.723 - - - - - 0.792 - - sprouty-related, EVH1 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-061207-31]
19. cacna1da ENSDARG00000102773 114 1.509 - - - - - 0.756 0.753 - - calcium channel, voltage-dependent, L type, alpha 1D subunit, a [Source:ZFIN;Acc:ZDB-GENE-030616-135]
20. lhx1a ENSDARG00000014018 958 1.506 - - 0.716 - - - 0.790 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
21. arhgap39 ENSDARG00000100007 344 1.504 - - - - - 0.755 - 0.749 - Rho GTPase activating protein 39 [Source:ZFIN;Acc:ZDB-GENE-041014-247]
22. si:dkeyp-35e5.11 si:dkeyp-35e5.11 38 1.502 0.733 - - - - - - 0.769 -
23. sema3c ENSDARG00000034300 881 1.482 - - - - - 0.758 0.724 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
24. si:dkey-183n20.2 si:dkey-183n20.2 210 1.48 0.705 0.775 - - - - - - -
25. efhb ENSDARG00000069703 9 1.479 0.733 0.746 - - - - - - - EF-hand domain family, member B [Source:ZFIN;Acc:ZDB-GENE-091001-1]
26. gpr186 ENSDARG00000094860 53 1.477 - - - - - 0.756 0.721 - - G protein-coupled receptor 186 [Source:ZFIN;Acc:ZDB-GENE-060503-489]
27. zc3h12b ENSDARG00000062463, ENSDARG00000113648 402 1.474 - - - - - 0.708 0.766 - - zinc finger CCCH-type containing 12B [Source:ZFIN;Acc:ZDB-GENE-060526-290]
28. sox21b ENSDARG00000008540 1460 1.472 - - - - - - 0.720 0.752 - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
29. nbeaa ENSDARG00000070080 862 1.468 - - - - - - 0.704 0.764 - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
30. jph3 ENSDARG00000102204 175 1.461 - - - - - 0.736 0.725 - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
31. dbx1a ENSDARG00000086393 3161 1.46 - - - - - 0.717 0.743 - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
32. CABZ01028287.1 CABZ01028287.1 626 1.452 - - - - - 0.743 0.709 - -
33. CABZ01079251.1 ENSDARG00000100498 38 1.45 0.704 0.746 - - - - - - - myeloid-associated differentiation marker-like [Source:NCBI gene;Acc:100536607]
34. erap2 ENSDARG00000098618 16 1.439 0.733 - - - - - 0.706 - - endoplasmic reticulum aminopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-080402-6]
35. ptprz1b ENSDARG00000020871 435 1.432 0.702 - - - - 0.730 - - - protein tyrosine phosphatase, receptor-type, Z polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-050506-100]
36. si:dkey-88j15.5 si:dkey-88j15.5 48 1 - 1.000 - - - - - - -
37. SNORD14 SNORD14 31 1 - 1.000 - - - - - - -
38. MTBP ENSDARG00000090447 174 0.979 - 0.979 - - - - - - - MDM2 binding protein [Source:ZFIN;Acc:ZDB-GENE-120724-1]
39. GPR35 GPR35 32 0.951 - 0.951 - - - - - - -
40. zgc:110699 ENSDARG00000017474 381 0.951 - 0.951 - - - - - - - zgc:110699 [Source:ZFIN;Acc:ZDB-GENE-050522-487]
41. GRIN3B GRIN3B 16 0.95 - 0.950 - - - - - - -
42. si:dkey-258p11.2 si:dkey-258p11.2 171 0.95 - 0.950 - - - - - - -
43. mfsd12b 8 0.95 - 0.950 - - - - - - - major facilitator superfamily domain containing 12b
44. THEM6 ENSDARG00000103914 49 0.95 - 0.950 - - - - - - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
45. GRID1 GRID1 51 0.95 - 0.950 - - - - - - -
46. ndufaf1 ENSDARG00000025549 42 0.95 - 0.950 - - - - - - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:ZFIN;Acc:ZDB-GENE-050306-9]
47. tcf3a ENSDARG00000005915 12 0.95 - 0.950 - - - - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
48. zgc:171310 ENSDARG00000110627 23 0.95 - 0.950 - - - - - - - zgc:171310 [Source:ZFIN;Acc:ZDB-GENE-070822-11]
49. pls1 ENSDARG00000039272 39 0.95 - 0.950 - - - - - - - plastin 1 (I isoform) [Source:ZFIN;Acc:ZDB-GENE-030131-6205]
50. zmat4b ENSDARG00000061419 7 0.95 - 0.950 - - - - - - - zinc finger, matrin-type 4b [Source:ZFIN;Acc:ZDB-GENE-091118-68]
51. C8H12orf43 C8H12orf43 50 0.946 - 0.946 - - - - - - -
52. ighmbp2 ENSDARG00000069274, ENSDARG00000113605 60 0.946 - 0.946 - - - - - - - immunoglobulin mu DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-258]
53. si:ch211-122l24.4_1 si:ch211-122l24.4_1 53 0.941 - 0.941 - - - - - - -
54. GLIS2 GLIS2 141 0.936 0.936 - - - - - - - -
55. cnot7 ENSDARG00000032116, ENSDARG00000115413 184 0.929 - 0.929 - - - - - - - CCR4-NOT transcription complex, subunit 7 [Source:ZFIN;Acc:ZDB-GENE-061013-29]
56. dcbld1 ENSDARG00000015907 36 0.928 0.928 - - - - - - - - discoidin, CUB and LCCL domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050913-77]
57. CARD11 ENSDARG00000052741 249 0.921 0.921 - - - - - - - - caspase recruitment domain family, member 11 [Source:ZFIN;Acc:ZDB-GENE-100219-1]
58. nbas ENSDARG00000008593 30 0.92 - 0.920 - - - - - - - neuroblastoma amplified sequence [Source:ZFIN;Acc:ZDB-GENE-041014-367]
59. si:dkey-32e6.3 ENSDARG00000092934 133 0.917 - 0.917 - - - - - - - si:dkey-32e6.3 [Source:ZFIN;Acc:ZDB-GENE-081104-408]
60. si:dkey-192g7.3 ENSDARG00000094012 105 0.912 - 0.912 - - - - - - - si:dkey-192g7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-411]
61. KCNA2 KCNA2 66 0.908 - - - - - - 0.908 - -
62. si:dkey-4i23.5 ENSDARG00000092137 152 0.906 - - - - - - 0.906 - - si:dkey-4i23.5 [Source:ZFIN;Acc:ZDB-GENE-070912-543]
63. pou4f2 ENSDARG00000069737 451 0.906 - - - - - - 0.906 - - POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
64. si:dkey-263m6.1 si:dkey-263m6.1 140 0.904 - 0.904 - - - - - - -
65. LARS2 ENSDARG00000075337 181 0.903 - 0.903 - - - - - - - leucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070928-3]
66. espn ENSDARG00000076414 343 0.902 - - - - - 0.902 - - - espin [Source:ZFIN;Acc:ZDB-GENE-081105-173]
67. BX511257.1 BX511257.1 66 0.899 - - - - - - 0.899 - -
68. CR925880.1 CR925880.1 196 0.899 - - - - - - 0.899 - -
69. TRMT12 ENSDARG00000060338 58 0.899 - - - - - - 0.899 - - tRNA methyltransferase 12 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060825-182]
70. CABZ01083815.1 ENSDARG00000105488 4 0.899 - - - - - - 0.899 - -
71. bcl3 ENSDARG00000087832 69 0.899 - - - - - - 0.899 - - B cell CLL/lymphoma 3 [Source:ZFIN;Acc:ZDB-GENE-061013-1]
72. npffr2.1 npffr2.1 60 0.899 - - - - - - 0.899 - -
73. si:dkey-283b15.3 si:dkey-283b15.3 81 0.899 - - - - - - 0.899 - -
74. si:ch211-260c23.1 13 0.899 - - - - - - 0.899 - - si:ch211-260c23.1, transcript variant X7
75. EHD2 EHD2 23 0.899 - - - - - - 0.899 - -
76. abcc5 ENSDARG00000061233 60 0.898 0.898 - - - - - - - - ATP-binding cassette, sub-family C (CFTR/MRP), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-17]
77. ENSDARG00000090150 ENSDARG00000090150 966 0.896 0.896 - - - - - - - -
78. si:dkey-54i3.3_2 si:dkey-54i3.3_2 59 0.891 0.891 - - - - - - - -
79. ENTHD1 ENTHD1 235 0.887 - 0.887 - - - - - - -
80. NEK3 ENSDARG00000058869 55 0.883 - - - - - - 0.883 - - NIMA related kinase 3 [Source:HGNC Symbol;Acc:HGNC:7746]
81. BX927318.1 ENSDARG00000097713 199 0.881 0.881 - - - - - - - -
82. PPP1R35 ENSDARG00000068916 94 0.881 - 0.881 - - - - - - - protein phosphatase 1, regulatory subunit 35 [Source:ZFIN;Acc:ZDB-GENE-060825-232]
83. crb2b ENSDARG00000060081 144 0.881 0.881 - - - - - - - - crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
84. wnt2 ENSDARG00000041117, ENSDARG00000115436 242 0.881 0.881 - - - - - - - - wingless-type MMTV integration site family member 2 [Source:ZFIN;Acc:ZDB-GENE-980526-416]
85. ms4a17a.4 ENSDARG00000014024 36 0.881 0.881 - - - - - - - - membrane-spanning 4-domains, subfamily A, member 17A.4 [Source:ZFIN;Acc:ZDB-GENE-070822-16]
86. gucy1a3 89 0.881 0.881 - - - - - - - - guanylate cyclase 1, soluble, alpha 3
87. BX255895.1 BX255895.1 29 0.881 0.881 - - - - - - - -
88. pdzd4 175 0.88 - - - - - - 0.880 - - PDZ domain containing 4, transcript variant X2
89. WBP1 ENSDARG00000098583 64 0.876 - - - - - - 0.876 - - WW domain binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1830]
90. slc34a2b ENSDARG00000036864 652 0.875 - 0.875 - - - - - - - solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
91. rtdr1 rtdr1 158 0.875 - 0.875 - - - - - - -
92. si:dkey-16p19.5 ENSDARG00000092583 284 0.874 - 0.874 - - - - - - - si:dkey-16p19.5 [Source:ZFIN;Acc:ZDB-GENE-120709-69]
93. fsd1 ENSDARG00000062017 207 0.872 - - - - - - 0.872 - - fibronectin type III and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-218]
94. SHROOM2 SHROOM2 934 0.87 - 0.870 - - - - - - -
95. C25H11orf74 C25H11orf74 161 0.87 - 0.870 - - - - - - -
96. chkb ENSDARG00000063167 440 0.869 - - - - - 0.869 - - - choline kinase beta [Source:ZFIN;Acc:ZDB-GENE-030131-2928]
97. rpgra ENSDARG00000056617 77 0.869 - 0.869 - - - - - - - retinitis pigmentosa GTPase regulator a [Source:ZFIN;Acc:ZDB-GENE-070912-423]
98. sgta ENSDARG00000019941 238 0.863 - 0.863 - - - - - - - small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-8811]
99. clock clock 32 0.862 - 0.862 - - - - - - -
100. gdf11 ENSDARG00000044924 534 0.861 - - - - - - 0.861 - - growth differentiation factor 11 [Source:ZFIN;Acc:ZDB-GENE-040427-2]

There are 776 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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