Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rfc3

Gene Name Gene ID Reads Annotation
rfc3 ENSDARG00000055969, ENSDARG00000112402 1448 replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3]










Genes with expression patterns similar to rfc3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfc3 ENSDARG00000055969, ENSDARG00000112402 1448 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3]
2. tcf19l ENSDARG00000040036 369 2.278 - - - 0.762 - 0.788 0.728 - - transcription factor 19 (SC1), like [Source:ZFIN;Acc:ZDB-GENE-060324-2]
3. ostf1_1 ENSDARG00000091555, ENSDARG00000114550 75 1.77 - 0.944 - - - 0.826 - - - osteoclast stimulating factor 1 [Source:ZFIN;Acc:ZDB-GENE-040625-157]
4. rac3b ENSDARG00000020795 1523 1.731 - 0.969 - - - - - 0.762 - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
5. pargl ENSDARG00000101719 155 1.729 - 0.943 - - - 0.786 - - - poly (ADP-ribose) glycohydrolase, like [Source:ZFIN;Acc:ZDB-GENE-090313-286]
6. TRIM35_10 TRIM35_10 484 1.72 - 0.942 - - - 0.778 - - -
7. WNT7A WNT7A 320 1.719 - 0.930 - - - 0.789 - - -
8. slc50a1 ENSDARG00000015158 329 1.708 - 0.902 - - - 0.806 - - - solute carrier family 50 (sugar efflux transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-050220-11]
9. tubg1 ENSDARG00000015610 2433 1.708 - 0.927 - - - - 0.781 - - tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836]
10. NAIF1_1 NAIF1_1 1336 1.68 - 0.829 - - - 0.851 - - -
11. qtrtd1 243 1.676 - 0.948 - - - - 0.728 - - queuine tRNA-ribosyltransferase domain containing 1, transcript variant X1
12. gna14 ENSDARG00000035178 618 1.676 - 0.939 - - - 0.737 - - - guanine nucleotide binding protein (G protein), alpha 14 [Source:ZFIN;Acc:ZDB-GENE-040808-7]
13. N4BP2L1 N4BP2L1 573 1.668 - 0.914 - - - 0.754 - - -
14. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.65 - 0.866 - - - - - 0.784 - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
15. specc1lb ENSDARG00000042232 640 1.649 0.798 - - - - 0.851 - - - sperm antigen with calponin homology and coiled-coil domains 1-like b [Source:ZFIN;Acc:ZDB-GENE-090423-1]
16. PROZ PROZ 288 1.642 - 0.886 - - - 0.756 - - -
17. sec22a ENSDARG00000078328 1207 1.638 - 0.922 - - - - 0.716 - - SEC22 homolog A, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-030131-3553]
18. si:dkey-57k17.1 ENSDARG00000104697 442 1.638 - 0.924 - - - - 0.714 - - si:dkey-57k17.1 [Source:ZFIN;Acc:ZDB-GENE-110913-105]
19. CR626907.1 ENSDARG00000077872 247 1.631 - 0.904 - - - 0.727 - - - alpha-2-macroglobulin-like [Source:NCBI gene;Acc:100006895]
20. ccnb1 ENSDARG00000051923 3226 1.629 - 0.870 0.759 - - - - - - cyclin B1 [Source:ZFIN;Acc:ZDB-GENE-000406-10]
21. kazald2 ENSDARG00000078518 3062 1.624 0.771 - - - - 0.853 - - - Kazal-type serine peptidase inhibitor domain 2 [Source:ZFIN;Acc:ZDB-GENE-070928-14]
22. map2k2a ENSDARG00000006609 856 1.616 - 0.915 - - - 0.701 - - - mitogen-activated protein kinase kinase 2a [Source:ZFIN;Acc:ZDB-GENE-041027-1]
23. si:ch211-69g19.2 ENSDARG00000070656, ENSDARG00000110191, ENSDARG00000114528 2860 1.592 - 0.809 - - - 0.783 - - - si:ch211-69g19.2 [Source:ZFIN;Acc:ZDB-GENE-030804-13]
24. ralab ENSDARG00000016253 636 1.587 - 0.864 - - - 0.723 - - - v-ral simian leukemia viral oncogene homolog Ab (ras related) [Source:ZFIN;Acc:ZDB-GENE-041114-195]
25. snrpd3 ENSDARG00000013800, ENSDARG00000112203 3334 1.586 - 0.862 - - - - - 0.724 - small nuclear ribonucleoprotein D3 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040625-55]
26. POLDIP3 ENSDARG00000099375 832 1.581 - 0.839 - - - 0.742 - - - polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]
27. BX539313.4 BX539313.4 1858 1.574 - - - - - - 0.770 0.804 -
28. epc2 ENSDARG00000007485 1200 1.564 - 0.862 - - - - 0.702 - - enhancer of polycomb homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-802]
29. zc2hc1a ENSDARG00000027915, ENSDARG00000112745 974 1.564 - - - - - - 0.715 0.849 - zinc finger, C2HC-type containing 1A [Source:ZFIN;Acc:ZDB-GENE-030131-3132]
30. nuf2 ENSDARG00000034624 2252 1.554 - 0.821 - - - - 0.733 - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
31. uchl1 ENSDARG00000026871 1578 1.541 - 0.841 - - - - 0.700 - - ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:ZFIN;Acc:ZDB-GENE-030131-3844]
32. ncapg ENSDARG00000070109, ENSDARG00000109474, ENSDARG00000113314, ENSDARG00000113623 2338 1.541 - 0.824 0.717 - - - - - - non-SMC condensin I complex, subunit G [Source:ZFIN;Acc:ZDB-GENE-041111-282]
33. ylpm1 ENSDARG00000043680 7676 1.539 - 0.767 - - - - 0.772 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
34. hnf1a ENSDARG00000009470 60 1.534 0.714 - - - - 0.820 - - - HNF1 homeobox a [Source:ZFIN;Acc:ZDB-GENE-021206-12]
35. fen1 ENSDARG00000011404 3358 1.53 - - - - - - 0.828 - 0.702 flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
36. RNF38 ENSDARG00000062055 3901 1.523 0.715 0.808 - - - - - - - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
37. sumo3b ENSDARG00000035993 3414 1.523 - 0.703 - - - - 0.820 - - small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
38. SI:DKEY-209E8.1 SI:DKEY-209E8.1 1143 1.512 - 0.756 - - - - 0.756 - -
39. snapc5 ENSDARG00000062476 1024 1.511 - - - 0.785 - - 0.726 - - small nuclear RNA activating complex, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-041111-50]
40. slc35b4 ENSDARG00000071087 1030 1.51 - 0.769 - - - 0.741 - - - solute carrier family 35, member B4 [Source:ZFIN;Acc:ZDB-GENE-030131-2457]
41. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.499 - 0.799 - - - - - - 0.700 ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
42. supt16h ENSDARG00000079949 4755 1.485 - - - - - - 0.717 0.768 - SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
43. BUD13 BUD13 594 1.48 - - - - - 0.760 0.720 - -
44. h3f3a 66671 1.479 - - - - - - 0.774 0.705 - H3 histone, family 3A, transcript variant X1
45. hoxc11a ENSDARG00000070351 1783 1.479 - 0.767 - - - - 0.712 - - homeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]
46. atad5a ENSDARG00000070568 1840 1.471 - - - - - 0.724 - 0.747 - ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
47. ZNF414 ENSDARG00000079229 846 1.468 - - - - - 0.767 - 0.701 - zinc finger protein 414 [Source:ZFIN;Acc:ZDB-GENE-070912-571]
48. NUP85 ENSDARG00000098679 804 1.463 - - - - - 0.737 0.726 - - nucleoporin 85 [Source:ZFIN;Acc:ZDB-GENE-040801-145]
49. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.441 - - - - - 0.707 0.734 - - ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
50. extl3 ENSDARG00000026811 4815 1.436 - - - - - 0.702 0.734 - - exostosin-like glycosyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-041124-2]
51. gata3 ENSDARG00000016526 1857 1.431 - 0.713 - - - 0.718 - - - GATA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-990415-82]
52. prdm10 ENSDARG00000104251 510 0.983 - 0.983 - - - - - - - PR domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-050419-74]
53. faub ENSDARG00000043663, ENSDARG00000111416, ENSDARG00000113054 1451 0.975 - 0.975 - - - - - - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b [Source:ZFIN;Acc:ZDB-GENE-050417-416]
54. b2ml ENSDARG00000015887 1060 0.975 - 0.975 - - - - - - - beta-2-microglobulin, like [Source:ZFIN;Acc:ZDB-GENE-040426-2136]
55. vsig10 ENSDARG00000058605, ENSDARG00000111389 361 0.972 - 0.972 - - - - - - - V-set and immunoglobulin domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030131-7476]
56. ca16b ENSDARG00000060123 389 0.971 - 0.971 - - - - - - - carbonic anhydrase XVI b [Source:ZFIN;Acc:ZDB-GENE-080818-1]
57. sc5d ENSDARG00000044642 549 0.971 - 0.971 - - - - - - - sterol-C5-desaturase [Source:ZFIN;Acc:ZDB-GENE-040912-56]
58. zdhhc6 ENSDARG00000075721 1494 0.97 - 0.970 - - - - - - - zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
59. kif2c ENSDARG00000076228 2281 0.969 - 0.969 - - - - - - - kinesin family member 2C [Source:ZFIN;Acc:ZDB-GENE-070912-298]
60. exoc3 ENSDARG00000014582, ENSDARG00000114378, ENSDARG00000117037 1155 0.968 - 0.968 - - - - - - - exocyst complex component 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5947]
61. tgm1 ENSDARG00000017799 442 0.967 - 0.967 - - - - - - - transglutaminase 1, K polypeptide [Source:ZFIN;Acc:ZDB-GENE-030131-9032]
62. coro7 ENSDARG00000089616 2141 0.965 - 0.965 - - - - - - - coronin 7 [Source:ZFIN;Acc:ZDB-GENE-050706-137]
63. NTAN1 ENSDARG00000105182 844 0.964 - 0.964 - - - - - - - N-terminal asparagine amidase [Source:ZFIN;Acc:ZDB-GENE-040426-1896]
64. scinla_1 ENSDARG00000102415, ENSDARG00000117110 544 0.962 - 0.962 - - - - - - - scinderin like a [Source:ZFIN;Acc:ZDB-GENE-030131-2005]
65. PHF13 ENSDARG00000102023 1102 0.962 - 0.962 - - - - - - - PHD finger protein 13 [Source:ZFIN;Acc:ZDB-GENE-121113-2]
66. mlst8 ENSDARG00000003167, ENSDARG00000116280 541 0.961 - 0.961 - - - - - - - MTOR associated protein, LST8 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6176]
67. CT025914.2 CT025914.2 53 0.96 - 0.960 - - - - - - -
68. usp5 ENSDARG00000014517, ENSDARG00000114598 1969 0.96 - 0.960 - - - - - - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
69. pnpla7a ENSDARG00000062986 1793 0.959 - 0.959 - - - - - - - patatin-like phospholipase domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-070112-1812]
70. epb41l4a ENSDARG00000040087 1013 0.959 - 0.959 - - - - - - - erythrocyte membrane protein band 4.1 like 4A [Source:ZFIN;Acc:ZDB-GENE-990415-20]
71. znrd1 ENSDARG00000036070 684 0.959 - 0.959 - - - - - - - zinc ribbon domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050320-131]
72. TNFRSF14_3 TNFRSF14_3 135 0.959 - 0.959 - - - - - - -
73. pltp ENSDARG00000104495 1037 0.957 - 0.957 - - - - - - - phospholipid transfer protein [Source:ZFIN;Acc:ZDB-GENE-040801-22]
74. ARHGAP32_1 ARHGAP32_1 124 0.957 - 0.957 - - - - - - -
75. fbxo25 ENSDARG00000075172 153 0.957 - 0.957 - - - - - - - F-box protein 25 [Source:ZFIN;Acc:ZDB-GENE-040801-19]
76. si:ch211-11n16.2 ENSDARG00000099779 417 0.957 - 0.957 - - - - - - - si:ch211-11n16.2 [Source:ZFIN;Acc:ZDB-GENE-041008-77]
77. myof ENSDARG00000006112 618 0.957 - 0.957 - - - - - - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
78. ankrd50l ENSDARG00000007077 1115 0.956 - 0.956 - - - - - - - ankyrin repeat domain 50-like [Source:ZFIN;Acc:ZDB-GENE-041008-117]
79. ldb1a ENSDARG00000010137 3035 0.956 - 0.956 - - - - - - - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
80. matk ENSDARG00000074670 225 0.956 - 0.956 - - - - - - - megakaryocyte-associated tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-070705-183]
81. BX569778.1 BX569778.1 36 0.956 - 0.956 - - - - - - -
82. zic5 ENSDARG00000016022 1034 0.956 - 0.956 - - - - - - - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
83. itgb1b.2 ENSDARG00000022689 523 0.955 - 0.955 - - - - - - - integrin, beta 1b.2 [Source:ZFIN;Acc:ZDB-GENE-040426-2598]
84. zbtb4 ENSDARG00000105255 362 0.955 - 0.955 - - - - - - - zinc finger and BTB domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-100318-5]
85. il4r il4r 75 0.955 - 0.955 - - - - - - -
86. si:ch73-138e16.8 175 0.954 - 0.954 - - - - - - - si:ch73-138e16.8
87. ttc38 ENSDARG00000042188, ENSDARG00000113493 307 0.954 - 0.954 - - - - - - - tetratricopeptide repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050522-318]
88. rabif ENSDARG00000002690, ENSDARG00000114340 891 0.954 - 0.954 - - - - - - - RAB interacting factor [Source:ZFIN;Acc:ZDB-GENE-040718-216]
89. C20H6orf58_1 C20H6orf58_1 216 0.954 - 0.954 - - - - - - -
90. aldh16a1 ENSDARG00000037935 617 0.953 - 0.953 - - - - - - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
91. KCTD14 ENSDARG00000110240 122 0.953 - 0.953 - - - - - - - potassium channel tetramerization domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-120215-239]
92. chsy3 ENSDARG00000069472 271 0.953 - 0.953 - - - - - - - chondroitin sulfate synthase 3 [Source:ZFIN;Acc:ZDB-GENE-030616-4]
93. syt8 syt8 82 0.953 - - - - - 0.953 - - -
94. prdm9 ENSDARG00000005382, ENSDARG00000110150 572 0.953 - 0.953 - - - - - - - PR domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1319]
95. si:dkey-27i16.3 si:dkey-27i16.3 494 0.953 - 0.953 - - - - - - -
96. ndst2a ENSDARG00000086269 754 0.953 - 0.953 - - - - - - - N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a [Source:ZFIN;Acc:ZDB-GENE-060810-182]
97. med30 ENSDARG00000101115 133 0.951 - 0.951 - - - - - - - mediator complex subunit 30 [Source:ZFIN;Acc:ZDB-GENE-040426-1676]
98. si:ch211-132g1.3 ENSDARG00000089477 769 0.951 - 0.951 - - - - - - - si:ch211-132g1.3 [Source:ZFIN;Acc:ZDB-GENE-090312-148]
99. CU861453.1 ENSDARG00000097192 271 0.951 - 0.951 - - - - - - -
100. tmem243a ENSDARG00000042214, ENSDARG00000110407 527 0.951 - 0.951 - - - - - - - transmembrane protein 243, mitochondrial a [Source:ZFIN;Acc:ZDB-GENE-050417-264]

There are 1308 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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